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Items: 1 to 50 of 80

1.

Dissecting the genetic control of root and leaf tissue-specific anthocyanin pigmentation in carrot (Daucus carota L.).

Bannoud F, Ellison S, Paolinelli M, Horejsi T, Senalik D, Fanzone M, Iorizzo M, Simon PW, Cavagnaro PF.

Theor Appl Genet. 2019 May 29. doi: 10.1007/s00122-019-03366-5. [Epub ahead of print]

PMID:
31144001
2.

Carrot leaves improve color and xanthophyll content of egg yolk in laying hens but are not as effective as commercially available marigold fortificant1.

Titcomb TJ, Kaeppler MS, Cook ME, Simon PW, Tanumihardjo SA.

Poult Sci. 2019 May 8. pii: pez257. doi: 10.3382/ps/pez257. [Epub ahead of print]

PMID:
31065708
3.

Carrot Leaves Maintain Liver Vitamin A Concentrations in Male Mongolian Gerbils Regardless of the Ratio of α- to β-Carotene When β-Carotene Equivalents Are Equalized.

Titcomb TJ, Kaeppler MS, Sandoval Cates SB, Shannon JM, Simon PW, Tanumihardjo SA.

J Nutr. 2019 Jun 1;149(6):951-958. doi: 10.1093/jn/nxz036.

PMID:
31050738
4.

Total Adipose Retinol Concentrations Are Correlated with Total Liver Retinol Concentrations in Male Mongolian Gerbils, but Only Partially Explained by Chylomicron Deposition Assessed with Total α-Retinol.

Sheftel J, Sowa M, Mourao L, Zoué LT, Davis CR, Simon PW, Tanumihardjo SA.

Curr Dev Nutr. 2019 Feb 8;3(2):nzy096. doi: 10.1093/cdn/nzy096. eCollection 2019 Feb.

5.

A Cluster of MYB Transcription Factors Regulates Anthocyanin Biosynthesis in Carrot (Daucus carota L.) Root and Petiole.

Iorizzo M, Cavagnaro PF, Bostan H, Zhao Y, Zhang J, Simon PW.

Front Plant Sci. 2019 Jan 14;9:1927. doi: 10.3389/fpls.2018.01927. eCollection 2018.

6.

An Automated Image Analysis Pipeline Enables Genetic Studies of Shoot and Root Morphology in Carrot (Daucus carota L.).

Turner SD, Ellison SL, Senalik DA, Simon PW, Spalding EP, Miller ND.

Front Plant Sci. 2018 Nov 27;9:1703. doi: 10.3389/fpls.2018.01703. eCollection 2018.

7.

Carotenoid Presence Is Associated with the Or Gene in Domesticated Carrot.

Ellison SL, Luby CH, Corak KE, Coe KM, Senalik D, Iorizzo M, Goldman IL, Simon PW, Dawson JC.

Genetics. 2018 Dec;210(4):1497-1508. doi: 10.1534/genetics.118.301299. Epub 2018 Oct 23.

PMID:
30352832
8.

Dissecting the Genetic Architecture of Shoot Growth in Carrot (Daucus carota L.) Using a Diallel Mating Design.

Turner SD, Maurizio PL, Valdar W, Yandell BS, Simon PW.

G3 (Bethesda). 2018 Feb 2;8(2):411-426. doi: 10.1534/g3.117.300235.

9.

Characterization of a Genomic Region under Selection in Cultivated Carrot (Daucus carota subsp. sativus) Reveals a Candidate Domestication Gene.

Macko-Podgórni A, Machaj G, Stelmach K, Senalik D, Grzebelus E, Iorizzo M, Simon PW, Grzebelus D.

Front Plant Sci. 2017 Jan 18;8:12. doi: 10.3389/fpls.2017.00012. eCollection 2017.

10.

Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae).

Arbizu CI, Ellison SL, Senalik D, Simon PW, Spooner DM.

BMC Evol Biol. 2016 Oct 28;16(1):234.

11.

Patterns of Gene Flow between Crop and Wild Carrot, Daucus carota (Apiaceae) in the United States.

Mandel JR, Ramsey AJ, Iorizzo M, Simon PW.

PLoS One. 2016 Sep 7;11(9):e0161971. doi: 10.1371/journal.pone.0161971. eCollection 2016.

12.

SHORT HYPOCOTYL1 Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation.

Bo K, Wang H, Pan Y, Behera TK, Pandey S, Wen C, Wang Y, Simon PW, Li Y, Chen J, Weng Y.

Plant Physiol. 2016 Oct;172(2):1273-1292. Epub 2016 Aug 24.

13.

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects.

Kole C, Muthamilarasan M, Henry R, Edwards D, Sharma R, Abberton M, Batley J, Bentley A, Blakeney M, Bryant J, Cai H, Cakir M, Cseke LJ, Cockram J, de Oliveira AC, De Pace C, Dempewolf H, Ellison S, Gepts P, Greenland A, Hall A, Hori K, Hughes S, Humphreys MW, Iorizzo M, Ismail AM, Marshall A, Mayes S, Nguyen HT, Ogbonnaya FC, Ortiz R, Paterson AH, Simon PW, Tohme J, Tuberosa R, Valliyodan B, Varshney RK, Wullschleger SD, Yano M, Prasad M.

Front Plant Sci. 2015 Aug 11;6:563. doi: 10.3389/fpls.2015.00563. eCollection 2015. Review.

14.

Identification and Characterization of Terpene Synthases Potentially Involved in the Formation of Volatile Terpenes in Carrot (Daucus carota L.) Roots.

Yahyaa M, Tholl D, Cormier G, Jensen R, Simon PW, Ibdah M.

J Agric Food Chem. 2015 May 20;63(19):4870-8. doi: 10.1021/acs.jafc.5b00546. Epub 2015 May 7.

PMID:
25924989
15.

A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.

Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW.

BMC Genomics. 2014 Dec 16;15:1118. doi: 10.1186/1471-2164-15-1118.

16.

Composition and (in)homogeneity of carotenoid crystals in carrot cells revealed by high resolution Raman imaging.

Roman M, Marzec KM, Grzebelus E, Simon PW, Baranska M, Baranski R.

Spectrochim Acta A Mol Biomol Spectrosc. 2015 Feb 5;136 Pt C:1395-400. doi: 10.1016/j.saa.2014.10.026. Epub 2014 Oct 18.

PMID:
25459698
17.

Morphometrics of Daucus (Apiaceae): a counterpart to a phylogenomic study.

Arbizu C, Reitsma KR, Simon PW, Spooner DM.

Am J Bot. 2014 Nov;101(11):2005-16. doi: 10.3732/ajb.1400252. Epub 2014 Oct 30.

18.

Phylogenomics of the carrot genus (Daucus, Apiaceae).

Arbizu C, Ruess H, Senalik D, Simon PW, Spooner DM.

Am J Bot. 2014 Oct;101(10):1666-85. doi: 10.3732/ajb.1400106. Epub 2014 Jul 30.

19.

Incidence and Severity of Cavity Spot of Carrot as Affected by Pigmentation, Temperature, and Rainfall.

Saude C, Simon PW, McDonald MR.

Plant Dis. 2014 Jul;98(7):929-936. doi: 10.1094/PDIS-10-13-1021-RE.

PMID:
30708851
20.

Mitochondrial atp9 genes from petaloid male-sterile and male-fertile carrots differ in their status of heteroplasmy, recombination involvement, post-transcriptional processing as well as accumulation of RNA and protein product.

Szklarczyk M, Szymański M, Wójcik-Jagła M, Simon PW, Weihe A, Börner T.

Theor Appl Genet. 2014 Aug;127(8):1689-701. doi: 10.1007/s00122-014-2331-x. Epub 2014 Jun 10.

21.

Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker.

Macko-Podgórni A, Iorizzo M, Smółka K, Simon PW, Grzebelus D.

Acta Biochim Pol. 2014;61(1):19-22. Epub 2014 Mar 17.

22.

Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers.

Grzebelus D, Iorizzo M, Senalik D, Ellison S, Cavagnaro P, Macko-Podgorni A, Heller-Uszynska K, Kilian A, Nothnagel T, Allender C, Simon PW, Baranski R.

Mol Breed. 2014;33:625-637. Epub 2013 Oct 26.

23.

Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus).

Schmaelzle S, Gannon B, Crawford S, Arscott SA, Goltz S, Palacios-Rojas N, Pixley KV, Simon PW, Tanumihardjo SA.

J Agric Food Chem. 2014 Jan 8;62(1):136-43. doi: 10.1021/jf403548w. Epub 2013 Dec 23.

24.

Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot.

Ali A, Matthews WC, Cavagnaro PF, Iorizzo M, Roberts PA, Simon PW.

J Hered. 2014 Mar-Apr;105(2):288-91. doi: 10.1093/jhered/est090. Epub 2013 Dec 11.

PMID:
24336925
25.

Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene.

Yahyaa M, Bar E, Dubey NK, Meir A, Davidovich-Rikanati R, Hirschberg J, Aly R, Tholl D, Simon PW, Tadmor Y, Lewinsohn E, Ibdah M.

J Agric Food Chem. 2013 Dec 18;61(50):12244-52. doi: 10.1021/jf404085k. Epub 2013 Dec 5.

PMID:
24289159
26.

Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis.

Yang L, Koo DH, Li D, Zhang T, Jiang J, Luan F, Renner SS, Hénaff E, Sanseverino W, Garcia-Mas J, Casacuberta J, Senalik DA, Simon PW, Chen J, Weng Y.

Plant J. 2014 Jan;77(1):16-30. doi: 10.1111/tpj.12355. Epub 2013 Dec 3.

27.

DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic.

Macko-Podgorni A, Nowicka A, Grzebelus E, Simon PW, Grzebelus D.

Genetica. 2013 Jun;141(4-6):255-67. doi: 10.1007/s10709-013-9725-6. Epub 2013 Jun 18.

28.

Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae).

Iorizzo M, Senalik DA, Ellison SL, Grzebelus D, Cavagnaro PF, Allender C, Brunet J, Spooner DM, Van Deynze A, Simon PW.

Am J Bot. 2013 May;100(5):930-8. doi: 10.3732/ajb.1300055. Epub 2013 Apr 17.

29.

Expression and mapping of anthocyanin biosynthesis genes in carrot.

Yildiz M, Willis DK, Cavagnaro PF, Iorizzo M, Abak K, Simon PW.

Theor Appl Genet. 2013 Jul;126(7):1689-702. doi: 10.1007/s00122-013-2084-y. Epub 2013 Mar 24.

PMID:
23525633
30.

Molecular mapping of vernalization requirement and fertility restoration genes in carrot.

Alessandro MS, Galmarini CR, Iorizzo M, Simon PW.

Theor Appl Genet. 2013 Feb;126(2):415-23. doi: 10.1007/s00122-012-1989-1. Epub 2012 Sep 27.

PMID:
23015218
31.

Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.).

Zhu H, Senalik D, McCown BH, Zeldin EL, Speers J, Hyman J, Bassil N, Hummer K, Simon PW, Zalapa JE.

Theor Appl Genet. 2012 Jan;124(1):87-96. doi: 10.1007/s00122-011-1689-2. Epub 2011 Sep 9.

PMID:
21904845
32.

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity.

Iorizzo M, Senalik DA, Grzebelus D, Bowman M, Cavagnaro PF, Matvienko M, Ashrafi H, Van Deynze A, Simon PW.

BMC Genomics. 2011 Aug 2;12:389. doi: 10.1186/1471-2164-12-389.

33.

Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.

Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW.

BMC Genomics. 2011 Aug 1;12:386. doi: 10.1186/1471-2164-12-386.

34.

Comparative FISH mapping of Daucus species (Apiaceae family).

Iovene M, Cavagnaro PF, Senalik D, Buell CR, Jiang J, Simon PW.

Chromosome Res. 2011 May;19(4):493-506. doi: 10.1007/s10577-011-9202-y. Epub 2011 May 6.

PMID:
21547583
35.

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.).

Cavagnaro PF, Senalik DA, Yang L, Simon PW, Harkins TT, Kodira CD, Huang S, Weng Y.

BMC Genomics. 2010 Oct 15;11:569. doi: 10.1186/1471-2164-11-569.

36.

RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae.

Bhasi A, Senalik D, Simon PW, Kumar B, Manikandan V, Philip P, Senapathy P.

BMC Plant Biol. 2010 Aug 6;10:161. doi: 10.1186/1471-2229-10-161.

37.

Anthocyanins in purple-orange carrots (Daucus carota L.) do not influence the bioavailability of beta-carotene in young women.

Arscott SA, Simon PW, Tanumihardjo SA.

J Agric Food Chem. 2010 Mar 10;58(5):2877-81. doi: 10.1021/jf9041326.

PMID:
20131807
38.

Extensive variation in fried chip color and tuber composition in cold-stored tubers of wild potato (solanum) germplasm.

McCann LC, Bethke PC, Simon PW.

J Agric Food Chem. 2010 Feb 24;58(4):2368-76. doi: 10.1021/jf903446v.

PMID:
20099883
39.

SplinkBES: a splinkerette-based method for generating long end sequences from large insert DNA libraries.

Cavagnaro PF, Senalik D, Simon PW.

Biotechniques. 2009 Aug;47(2):681-2, 684, 686, passim. doi: 10.2144/000113122.

40.

Major QTL for carrot color are positionally associated with carotenoid biosynthetic genes and interact epistatically in a domesticated x wild carrot cross.

Just BJ, Santos CA, Yandell BS, Simon PW.

Theor Appl Genet. 2009 Nov;119(7):1155-69. doi: 10.1007/s00122-009-1117-z. Epub 2009 Aug 6.

PMID:
19657616
41.

Serum alpha- and beta-carotene concentrations qualitatively respond to sustained carrot feeding.

Tanumihardjo SA, Horvitz MA, Dosti MP, Simon PW.

Exp Biol Med (Maywood). 2009 Nov;234(11):1280-6. doi: 10.3181/0903-RM-106. Epub 2009 Aug 5.

PMID:
19657072
42.

A consensus linkage map identifies genomic regions controlling fruit maturity and beta-carotene-associated flesh color in melon (Cucumis melo L.).

Cuevas HE, Staub JE, Simon PW, Zalapa JE.

Theor Appl Genet. 2009 Aug;119(4):741-56. doi: 10.1007/s00122-009-1085-3. Epub 2009 Jun 24.

PMID:
19551368
43.

Antioxidant phytochemicals and antioxidant capacity of biofortified carrots (Daucus carota L.) of various colors.

Sun T, Simon PW, Tanumihardjo SA.

J Agric Food Chem. 2009 May 27;57(10):4142-7. doi: 10.1021/jf9001044. Epub 2009 Apr 9.

PMID:
19358535
44.

Bioavailability of anthocyanins from purple carrot juice: effects of acylation and plant matrix.

Charron CS, Kurilich AC, Clevidence BA, Simon PW, Harrison DJ, Britz SJ, Baer DJ, Novotny JA.

J Agric Food Chem. 2009 Feb 25;57(4):1226-30. doi: 10.1021/jf802988s.

PMID:
19166298
45.

Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences.

Cavagnaro PF, Chung SM, Szklarczyk M, Grzebelus D, Senalik D, Atkins AE, Simon PW.

Mol Genet Genomics. 2009 Mar;281(3):273-88. doi: 10.1007/s00438-008-0411-9. Epub 2008 Dec 23.

PMID:
19104839
46.

Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato.

Iovene M, Wielgus SM, Simon PW, Buell CR, Jiang J.

Genetics. 2008 Nov;180(3):1307-17. doi: 10.1534/genetics.108.093179. Epub 2008 Sep 14.

47.

Mapping of genetic loci that regulate quantity of beta-carotene in fruit of US Western Shipping melon (Cucumis melo L.).

Cuevas HE, Staub JE, Simon PW, Zalapa JE, McCreight JD.

Theor Appl Genet. 2008 Nov;117(8):1345-59. doi: 10.1007/s00122-008-0868-2. Epub 2008 Sep 5.

PMID:
18773190
48.

Biofortified carrot intake enhances liver antioxidant capacity and vitamin a status in mongolian gerbils.

Mills JP, Simon PW, Tanumihardjo SA.

J Nutr. 2008 Sep;138(9):1692-8.

PMID:
18716171
49.

Major cytogenetic landmarks and karyotype analysis inDaucus carota and other Apiaceae.

Iovene M, Grzebelus E, Carputo D, Jiang J, Simon PW.

Am J Bot. 2008 Jul;95(7):793-804. doi: 10.3732/ajb.0700007.

50.

Diversity of DcMaster-like elements of the PIF/Harbinger superfamily in the carrot genome.

Grzebelus D, Simon PW.

Genetica. 2009 Apr;135(3):347-53. doi: 10.1007/s10709-008-9282-6. Epub 2008 Jun 6.

PMID:
18535910

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