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Items: 1 to 50 of 66

1.

Hierarchical Assembly of Nucleic Acid/Coiled-Coil Peptide Nanostructures.

Buchberger A, Simmons CR, Fahmi NE, Freeman R, Stephanopoulos N.

J Am Chem Soc. 2020 Jan 22;142(3):1406-1416. doi: 10.1021/jacs.9b11158. Epub 2020 Jan 5.

PMID:
31820959
2.

Tunable Nanoscale Cages from Self-Assembling DNA and Protein Building Blocks.

Xu Y, Jiang S, Simmons CR, Narayanan RP, Zhang F, Aziz AM, Yan H, Stephanopoulos N.

ACS Nano. 2019 Mar 26;13(3):3545-3554. doi: 10.1021/acsnano.8b09798. Epub 2019 Mar 12.

PMID:
30835439
3.

Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry.

Zhang F, Simmons CR, Gates J, Liu Y, Yan H.

Angew Chem Int Ed Engl. 2018 Sep 17;57(38):12504-12507. doi: 10.1002/anie.201807223. Epub 2018 Aug 27.

PMID:
30066355
4.

Redox Engineering of Cytochrome c using DNA Nanostructure-Based Charged Encapsulation and Spatial Control.

Ge Z, Su Z, Simmons CR, Li J, Jiang S, Li W, Yang Y, Liu Y, Chiu W, Fan C, Yan H.

ACS Appl Mater Interfaces. 2019 Apr 17;11(15):13874-13880. doi: 10.1021/acsami.8b07101. Epub 2018 Jun 25.

5.

Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals.

Simmons CR, Zhang F, MacCulloch T, Fahmi N, Stephanopoulos N, Liu Y, Seeman NC, Yan H.

J Am Chem Soc. 2017 Aug 16;139(32):11254-11260. doi: 10.1021/jacs.7b06485. Epub 2017 Aug 2.

PMID:
28731332
6.

Correction to "Construction and Structure Determination of a Three-dimensional DNA Crystal".

Simmons CR, Zhang F, Birktoft JJ, Qi X, Han D, Liu Y, Sha R, Abdallah H, Hernandez C, Ohayon Y, Seeman NC, Yan H.

J Am Chem Soc. 2016 Sep 28;138(38):12690. doi: 10.1021/jacs.6b09106. Epub 2016 Sep 19. No abstract available.

PMID:
27643407
7.

Construction and Structure Determination of a Three-Dimensional DNA Crystal.

Simmons CR, Zhang F, Birktoft JJ, Qi X, Han D, Liu Y, Sha R, Abdallah HO, Hernandez C, Ohayon YP, Seeman NC, Yan H.

J Am Chem Soc. 2016 Aug 10;138(31):10047-54. doi: 10.1021/jacs.6b06508. Epub 2016 Aug 2. Erratum in: J Am Chem Soc. 2016 Sep 28;138(38):12690.

PMID:
27447429
8.

Design of dinuclear manganese cofactors for bacterial reaction centers.

Olson TL, Espiritu E, Edwardraja S, Simmons CR, Williams JC, Ghirlanda G, Allen JP.

Biochim Biophys Acta. 2016 May;1857(5):539-547. doi: 10.1016/j.bbabio.2015.09.003. Epub 2015 Sep 25. Review.

9.

Purification and assembly of thermostable Cy5 labeled γ-PNAs into a 3D DNA nanocage.

Flory JD, Johnson T, Simmons CR, Lin S, Ghirlanda G, Fromme P.

Artif DNA PNA XNA. 2014;5(3):1-8. doi: 10.4161/1949095X.2014.992181.

PMID:
25760314
10.

Low temperature assembly of functional 3D DNA-PNA-protein complexes.

Flory JD, Simmons CR, Lin S, Johnson T, Andreoni A, Zook J, Ghirlanda G, Liu Y, Yan H, Fromme P.

J Am Chem Soc. 2014 Jun 11;136(23):8283-95. doi: 10.1021/ja501228c. Epub 2014 May 28.

PMID:
24871902
11.

Maize ARGOS1 (ZAR1) transgenic alleles increase hybrid maize yield.

Guo M, Rupe MA, Wei J, Winkler C, Goncalves-Butruille M, Weers BP, Cerwick SF, Dieter JA, Duncan KE, Howard RJ, Hou Z, Löffler CM, Cooper M, Simmons CR.

J Exp Bot. 2014 Jan;65(1):249-60. doi: 10.1093/jxb/ert370. Epub 2013 Nov 11.

12.

Charge transport within a three-dimensional DNA nanostructure framework.

Lu N, Pei H, Ge Z, Simmons CR, Yan H, Fan C.

J Am Chem Soc. 2012 Aug 15;134(32):13148-51. doi: 10.1021/ja302447r. Epub 2012 Aug 1.

PMID:
22809010
13.

BACE2 expression increases in human neurodegenerative disease.

Holler CJ, Webb RL, Laux AL, Beckett TL, Niedowicz DM, Ahmed RR, Liu Y, Simmons CR, Dowling AL, Spinelli A, Khurgel M, Estus S, Head E, Hersh LB, Murphy MP.

Am J Pathol. 2012 Jan;180(1):337-50. doi: 10.1016/j.ajpath.2011.09.034. Epub 2011 Nov 7.

14.
15.

Size-selective incorporation of DNA nanocages into nanoporous antimony-doped tin oxide materials.

Simmons CR, Schmitt D, Wei X, Han D, Volosin AM, Ladd DM, Seo DK, Liu Y, Yan H.

ACS Nano. 2011 Jul 26;5(7):6060-8. doi: 10.1021/nn2019286. Epub 2011 Jun 27.

PMID:
21696152
16.

Cell number counts--the fw2.2 and CNR genes and implications for controlling plant fruit and organ size.

Guo M, Simmons CR.

Plant Sci. 2011 Jul;181(1):1-7. doi: 10.1016/j.plantsci.2011.03.010. Epub 2011 Mar 23. Review.

PMID:
21600391
17.

Rheumatoid arthritis-associated polymorphisms are not protective against Alzheimer's disease.

Simmons CR, Zou F, Younkin SG, Estus S.

Mol Neurodegener. 2011 May 19;6:33. doi: 10.1186/1750-1326-6-33.

18.
19.

Maize global transcriptomics reveals pervasive leaf diurnal rhythms but rhythms in developing ears are largely limited to the core oscillator.

Hayes KR, Beatty M, Meng X, Simmons CR, Habben JE, Danilevskaya ON.

PLoS One. 2010 Sep 23;5(9):e12887. doi: 10.1371/journal.pone.0012887.

20.

Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.

Simmons CR, Magee CL, Smith DA, Lauman L, Chaput JC, Allen JP.

Biochemistry. 2010 Oct 12;49(40):8689-99. doi: 10.1021/bi100398p. Epub 2010 Sep 16.

PMID:
20822107
21.

A customized gene expression microarray reveals that the brittle stem phenotype fs2 of barley is attributable to a retroelement in the HvCesA4 cellulose synthase gene.

Burton RA, Ma G, Baumann U, Harvey AJ, Shirley NJ, Taylor J, Pettolino F, Bacic A, Beatty M, Simmons CR, Dhugga KS, Rafalski JA, Tingey SV, Fincher GB.

Plant Physiol. 2010 Aug;153(4):1716-28. doi: 10.1104/pp.110.158329. Epub 2010 Jun 7.

22.

Cell Number Regulator1 affects plant and organ size in maize: implications for crop yield enhancement and heterosis.

Guo M, Rupe MA, Dieter JA, Zou J, Spielbauer D, Duncan KE, Howard RJ, Hou Z, Simmons CR.

Plant Cell. 2010 Apr;22(4):1057-73. doi: 10.1105/tpc.109.073676. Epub 2010 Apr 16.

23.

Thiol dioxygenases: unique families of cupin proteins.

Stipanuk MH, Simmons CR, Karplus PA, Dominy JE Jr.

Amino Acids. 2011 Jun;41(1):91-102. doi: 10.1007/s00726-010-0518-2. Epub 2010 Mar 1. Review.

24.

Expression of SORL1 and a novel SORL1 splice variant in normal and Alzheimers disease brain.

Grear KE, Ling IF, Simpson JF, Furman JL, Simmons CR, Peterson SL, Schmitt FA, Markesbery WR, Liu Q, Crook JE, Younkin SG, Bu G, Estus S.

Mol Neurodegener. 2009 Nov 4;4:46. doi: 10.1186/1750-1326-4-46.

25.

A synthetic protein selected for ligand binding affinity mediates ATP hydrolysis.

Simmons CR, Stomel JM, McConnell MD, Smith DA, Watkins JL, Allen JP, Chaput JC.

ACS Chem Biol. 2009 Aug 21;4(8):649-58. doi: 10.1021/cb900109w.

PMID:
19522480
26.

Cysteine dioxygenase: a robust system for regulation of cellular cysteine levels.

Stipanuk MH, Ueki I, Dominy JE Jr, Simmons CR, Hirschberger LL.

Amino Acids. 2009 May;37(1):55-63. doi: 10.1007/s00726-008-0202-y. Epub 2008 Nov 15. Review.

27.

A putative Fe2+-bound persulfenate intermediate in cysteine dioxygenase.

Simmons CR, Krishnamoorthy K, Granett SL, Schuller DJ, Dominy JE Jr, Begley TP, Stipanuk MH, Karplus PA.

Biochemistry. 2008 Nov 4;47(44):11390-2. doi: 10.1021/bi801546n. Epub 2008 Oct 11.

28.

Modeling chromatographic dispersion: a comparison of popular equations.

Usher KM, Simmons CR, Dorsey JG.

J Chromatogr A. 2008 Jul 25;1200(2):122-8. doi: 10.1016/j.chroma.2008.05.073. Epub 2008 Jun 17.

PMID:
18565532
29.

A genomic and expression compendium of the expanded PEBP gene family from maize.

Danilevskaya ON, Meng X, Hou Z, Ananiev EV, Simmons CR.

Plant Physiol. 2008 Jan;146(1):250-64. Epub 2007 Nov 9.

30.

Discovery and characterization of a second mammalian thiol dioxygenase, cysteamine dioxygenase.

Dominy JE Jr, Simmons CR, Hirschberger LL, Hwang J, Coloso RM, Stipanuk MH.

J Biol Chem. 2007 Aug 31;282(35):25189-98. Epub 2007 Jun 20.

31.

Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection.

Deufel C, Forth S, Simmons CR, Dejgosha S, Wang MD.

Nat Methods. 2007 Mar;4(3):223-5. Epub 2007 Feb 25.

PMID:
17322891
32.

Identification and characterization of bacterial cysteine dioxygenases: a new route of cysteine degradation for eubacteria.

Dominy JE Jr, Simmons CR, Karplus PA, Gehring AM, Stipanuk MH.

J Bacteriol. 2006 Aug;188(15):5561-9.

33.

Crystal structure of mammalian cysteine dioxygenase. A novel mononuclear iron center for cysteine thiol oxidation.

Simmons CR, Liu Q, Huang Q, Hao Q, Begley TP, Karplus PA, Stipanuk MH.

J Biol Chem. 2006 Jul 7;281(27):18723-33. Epub 2006 Apr 11.

34.

Preparation, crystallization and X-ray diffraction analysis to 1.5 A resolution of rat cysteine dioxygenase, a mononuclear iron enzyme responsible for cysteine thiol oxidation.

Simmons CR, Hao Q, Stipanuk MH.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Nov 1;61(Pt 11):1013-6. Epub 2005 Oct 25.

35.
36.

A maize defense-inducible gene is a major facilitator superfamily member related to bacterial multidrug resistance efflux antiporters.

Simmons CR, Fridlender M, Navarro PA, Yalpani N.

Plant Mol Biol. 2003 May;52(2):433-46.

PMID:
12856948
37.

A 2-oxoglutarate-dependent dioxygenase is integrated in DIMBOA-biosynthesis.

Frey M, Huber K, Park WJ, Sicker D, Lindberg P, Meeley RB, Simmons CR, Yalpani N, Gierl A.

Phytochemistry. 2003 Feb;62(3):371-6.

PMID:
12620350
38.

Inhibition of tobacco etch virus protease activity by detergents.

Mohanty AK, Simmons CR, Wiener MC.

Protein Expr Purif. 2003 Jan;27(1):109-14.

PMID:
12509992
39.

The measurement and meaning of void volumes in reversed-phase liquid chromatography.

Rimmer CA, Simmons CR, Dorsey JG.

J Chromatogr A. 2002 Aug 2;965(1-2):219-32. Review.

PMID:
12236527
40.

Characterization of the aldehyde dehydrogenase gene families of Zea mays and Arabidopsis.

Skibbe DS, Liu F, Wen TJ, Yandeau MD, Cui X, Cao J, Simmons CR, Schnable PS.

Plant Mol Biol. 2002 Mar-Apr;48(5-6):751-64.

PMID:
11999848
41.

Maize rhm1 resistance to Bipolaris maydis is associated with few differences in pathogenesis-related proteins and global mRNA profiles.

Simmons CR, Grant S, Altier DJ, Dowd PF, Crasta O, Folkerts O, Yalpani N.

Mol Plant Microbe Interact. 2001 Aug;14(8):947-54.

42.
43.

Endo-1,3;1,4-beta-glucanase from coleoptiles of rice and maize: role in the regulation of plant growth.

Thomas BR, Inouhe M, Simmons CR, Nevins DJ.

Int J Biol Macromol. 2000 Apr 12;27(2):145-9.

PMID:
10771064
44.
45.

Protein and fat metabolism in cows given somavubove before parturition.

Simmons CR, Bergen WG, Vandehaar MJ, Sprecher DJ, Sniffen CJ, Stanisiewski EP, Tucker HA.

J Dairy Sci. 1994 Jul;77(7):1835-47.

46.

Re: Selecting the right technique to reform a reverse curve catheter (Simmons style): critical review.

Smith DC, Simmons CR.

Cardiovasc Intervent Radiol. 1993 Mar-Apr;16(2):130. No abstract available.

PMID:
8485744
47.

Structure of a rice beta-glucanase gene regulated by ethylene, cytokinin, wounding, salicylic acid and fungal elicitors.

Simmons CR, Litts JC, Huang N, Rodriguez RL.

Plant Mol Biol. 1992 Jan;18(1):33-45.

PMID:
1731976
48.

Synthesis and secretion of alpha-amylase by rice callus: evidence for differential gene expression.

Simmons CR, Huang N, Cao Y, Rodriguez RL.

Biotechnol Bioeng. 1991 Aug 20;38(5):545-51.

PMID:
18604813
49.

The isolation and characterization of a barley 1,3-1,4-beta-glucanase gene.

Litts JC, Simmons CR, Karrer EE, Huang N, Rodriguez RL.

Eur J Biochem. 1990 Dec 27;194(3):831-8.

50.

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