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Items: 41

1.

Carbon source regulates polysaccharide capsule biosynthesis in Streptococcus pneumoniae.

Troxler LJ, Werren JP, Schaffner TO, Mostacci N, Vermathen P, Vermathen M, Wüthrich D, Simillion C, Brugger SD, Bruggmann R, Hathaway LJ, Furrer J, Hilty M.

J Biol Chem. 2019 Nov 15;294(46):17224-17238. doi: 10.1074/jbc.RA119.010764. Epub 2019 Oct 8.

2.

Cervico-vaginal placental α-macroglobulin-1 combined with cervical length for the prediction of preterm birth in women with threatened preterm labor.

Radan AP, Aleksandra Polowy J, Heverhagen A, Simillion C, Baumann M, Raio L, Schleussner E, Mueller M, Surbek D.

Acta Obstet Gynecol Scand. 2019 Oct 6. doi: 10.1111/aogs.13744. [Epub ahead of print]

PMID:
31587255
3.

MiRNAs Are Involved in Tall Cell Morphology in Papillary Thyroid Carcinoma.

Boos LA, Schmitt A, Moch H, Komminoth P, Simillion C, Marinoni I, Nikiforov YE, Nikiforova MN, Perren A, Dettmer MS.

Cancers (Basel). 2019 Jun 25;11(6). pii: E885. doi: 10.3390/cancers11060885.

4.

The IL-33/ST2 pathway shapes the regulatory T cell phenotype to promote intestinal cancer.

Pastille E, Wasmer MH, Adamczyk A, Vu VP, Mager LF, Phuong NNT, Palmieri V, Simillion C, Hansen W, Kasper S, Schuler M, Muggli B, McCoy KD, Buer J, Zlobec I, Westendorf AM, Krebs P.

Mucosal Immunol. 2019 Jul;12(4):990-1003. doi: 10.1038/s41385-019-0176-y. Epub 2019 Jun 5.

5.

Siglec-9 Regulates an Effector Memory CD8+ T-cell Subset That Congregates in the Melanoma Tumor Microenvironment.

Haas Q, Boligan KF, Jandus C, Schneider C, Simillion C, Stanczak MA, Haubitz M, Seyed Jafari SM, Zippelius A, Baerlocher GM, Läubli H, Hunger RE, Romero P, Simon HU, von Gunten S.

Cancer Immunol Res. 2019 May;7(5):707-718. doi: 10.1158/2326-6066.CIR-18-0505. Epub 2019 Apr 15.

PMID:
30988027
6.

CD8+ T cells expand stem and progenitor cells in favorable but not adverse risk acute myeloid leukemia.

Radpour R, Riether C, Simillion C, Höpner S, Bruggmann R, Ochsenbein AF.

Leukemia. 2019 Oct;33(10):2379-2392. doi: 10.1038/s41375-019-0441-9. Epub 2019 Mar 15.

7.

Targeting compensatory MEK/ERK activation increases JAK inhibitor efficacy in myeloproliferative neoplasms.

Stivala S, Codilupi T, Brkic S, Baerenwaldt A, Ghosh N, Hao-Shen H, Dirnhofer S, Dettmer MS, Simillion C, Kaufmann BA, Chiu S, Keller M, Kleppe M, Hilpert M, Buser AS, Passweg JR, Radimerski T, Skoda RC, Levine RL, Meyer SC.

J Clin Invest. 2019 Mar 4;130:1596-1611. doi: 10.1172/JCI98785. eCollection 2019 Mar 4.

8.

Human "TH9" cells are a subpopulation of PPAR-γ+ TH2 cells.

Micossé C, von Meyenn L, Steck O, Kipfer E, Adam C, Simillion C, Seyed Jafari SM, Olah P, Yawlkar N, Simon D, Borradori L, Kuchen S, Yerly D, Homey B, Conrad C, Snijder B, Schmidt M, Schlapbach C.

Sci Immunol. 2019 Jan 18;4(31). pii: eaat5943. doi: 10.1126/sciimmunol.aat5943.

PMID:
30658968
9.

Determination of host proteins composing the microenvironment of coronavirus replicase complexes by proximity-labeling.

V'kovski P, Gerber M, Kelly J, Pfaender S, Ebert N, Braga Lagache S, Simillion C, Portmann J, Stalder H, Gaschen V, Bruggmann R, Stoffel MH, Heller M, Dijkman R, Thiel V.

Elife. 2019 Jan 11;8. pii: e42037. doi: 10.7554/eLife.42037.

10.

Stem cell secretome attenuates acute rejection in rat lung allotransplant.

Pieróg J, Fytianos K, Tamò L, Simillion C, Taddeo A, Kocher G, Gugger M, Grodzki T, Heller M, Blank F, Geiser T, Schmid RA, Gazdhar A.

Interact Cardiovasc Thorac Surg. 2019 May 1;28(5):812-818. doi: 10.1093/icvts/ivy306.

PMID:
30508108
11.

Gene expression in chronic granulomatous disease and interferon-γ receptor-deficient cells treated in vitro with interferon-γ.

Frazão JB, Colombo M, Simillion C, Bilican A, Keller I, Wüthrich D, Zhu Z, Okoniewski MJ, Bruggmann R, Condino-Neto A, Newburger PE.

J Cell Biochem. 2019 Mar;120(3):4321-4332. doi: 10.1002/jcb.27718. Epub 2018 Sep 27.

PMID:
30260027
12.

Anti-tumoral effects of exercise on hepatocellular carcinoma growth.

Saran U, Guarino M, Rodríguez S, Simillion C, Montani M, Foti M, Humar B, St-Pierre MV, Dufour JF.

Hepatol Commun. 2018 Mar 22;2(5):607-620. doi: 10.1002/hep4.1159. eCollection 2018 May.

13.

A Cartography of Siglecs and Sialyltransferases in Gynecologic Malignancies: Is There a Road Towards a Sweet Future?

Haas Q, Simillion C, von Gunten S.

Front Oncol. 2018 Mar 13;8:68. doi: 10.3389/fonc.2018.00068. eCollection 2018.

14.

Ribonuclease inhibitor 1 regulates erythropoiesis by controlling GATA1 translation.

Chennupati V, Veiga DF, Maslowski KM, Andina N, Tardivel A, Yu EC, Stilinovic M, Simillion C, Duchosal MA, Quadroni M, Roberts I, Sankaran VG, MacDonald HR, Fasel N, Angelillo-Scherrer A, Schneider P, Hoang T, Allam R.

J Clin Invest. 2018 Apr 2;128(4):1597-1614. doi: 10.1172/JCI94956. Epub 2018 Mar 19.

15.

Gene Network Analysis of Interstitial Macrophages After Treatment with Induced Pluripotent Stem Cells Secretome (iPSC-cm) in the Bleomycin Injured Rat Lung.

Tamò L, Simillion C, Hibaoui Y, Feki A, Gugger M, Prasse A, Jäger B, Goldmann T, Geiser T, Gazdhar A.

Stem Cell Rev Rep. 2018 Jun;14(3):412-424. doi: 10.1007/s12015-017-9790-9.

16.

Safety and effectiveness of labour induction after caesarean section using balloon catheter or oxytocin.

Radan AP, Amylidi-Mohr S, Mosimann B, Simillion C, Raio L, Mueller M, Surbek D.

Swiss Med Wkly. 2017 Nov 8;147:w14532. doi: 10.4414/smw.2017.14532. eCollection 2017.

17.

TREM-1 promotes intestinal tumorigenesis.

Saurer L, Zysset D, Rihs S, Mager L, Gusberti M, Simillion C, Lugli A, Zlobec I, Krebs P, Mueller C.

Sci Rep. 2017 Nov 1;7(1):14870. doi: 10.1038/s41598-017-14516-4.

18.

Robust Regression Analysis of GCMS Data Reveals Differential Rewiring of Metabolic Networks in Hepatitis B and C Patients.

Simillion C, Semmo N, Idle JR, Beyoğlu D.

Metabolites. 2017 Oct 8;7(4). pii: E51. doi: 10.3390/metabo7040051.

19.

The ESRP1-GPR137 axis contributes to intestinal pathogenesis.

Mager LF, Koelzer VH, Stuber R, Thoo L, Keller I, Koeck I, Langenegger M, Simillion C, Pfister SP, Faderl M, Genitsch V, Tcymbarevich I, Juillerat P, Li X, Xia Y, Karamitopoulou E, Lyck R, Zlobec I, Hapfelmeier S, Bruggmann R, McCoy KD, Macpherson AJ, Müller C, Beutler B, Krebs P.

Elife. 2017 Oct 4;6. pii: e28366. doi: 10.7554/eLife.28366.

20.

2-Deoxy-D-glucose Restore Glucocorticoid Sensitivity in Acute Lymphoblastic Leukemia via Modification of N-Linked Glycosylation in an Oxygen Tension-Independent Manner.

Leni Z, Ćwiek P, Dimitrova V, Dulcey AS, Zamboni N, Simillion C, Rossi G, Leibundgut K, Arcaro A.

Oxid Med Cell Longev. 2017;2017:2487297. doi: 10.1155/2017/2487297. Epub 2017 Jul 26.

21.

Metabolomic Analysis of Mice Exposed to Gamma Radiation Reveals a Systemic Understanding of Total-Body Exposure.

Golla S, Golla JP, Krausz KW, Manna SK, Simillion C, Beyoğlu D, Idle JR, Gonzalez FJ.

Radiat Res. 2017 May;187(5):612-629. doi: 10.1667/RR14592.1. Epub 2017 Mar 9.

22.

Mesenchymal stromal cells from umbilical cord Wharton's jelly trigger oligodendroglial differentiation in neural progenitor cells through cell-to-cell contact.

Oppliger B, Joerger-Messerli MS, Simillion C, Mueller M, Surbek DV, Schoeberlein A.

Cytotherapy. 2017 Jul;19(7):829-838. doi: 10.1016/j.jcyt.2017.03.075. Epub 2017 Apr 27.

PMID:
28457739
23.

Avoiding the pitfalls of gene set enrichment analysis with SetRank.

Simillion C, Liechti R, Lischer HE, Ioannidis V, Bruggmann R.

BMC Bioinformatics. 2017 Mar 4;18(1):151. doi: 10.1186/s12859-017-1571-6.

24.

Impaired liver regeneration in aged mice can be rescued by silencing Hippo core kinases MST1 and MST2.

Loforese G, Malinka T, Keogh A, Baier F, Simillion C, Montani M, Halazonetis TD, Candinas D, Stroka D.

EMBO Mol Med. 2017 Jan;9(1):46-60. doi: 10.15252/emmm.201506089.

25.

TREM-1 links dyslipidemia to inflammation and lipid deposition in atherosclerosis.

Zysset D, Weber B, Rihs S, Brasseit J, Freigang S, Riether C, Banz Y, Cerwenka A, Simillion C, Marques-Vidal P, Ochsenbein AF, Saurer L, Mueller C.

Nat Commun. 2016 Oct 20;7:13151. doi: 10.1038/ncomms13151.

26.

PreImplantation factor (PIF) therapy provides comprehensive protection against radiation induced pathologies.

Shainer R, Almogi-Hazan O, Berger A, Hinden L, Mueller M, Brodie C, Simillion C, Paidas M, Barnea ER, Or R.

Oncotarget. 2016 Sep 13;7(37):58975-58994. doi: 10.18632/oncotarget.10635.

27.

Doxorubicin Affects Expression of Proteins of Neuronal Pathways in MCF-7 Breast Cancer Cells.

Petrovic M, Simillion C, Kruzliak P, Sabo J, Heller M.

Cancer Genomics Proteomics. 2015 Nov-Dec;12(6):347-58.

PMID:
26543081
28.

Regular exercise decreases liver tumors development in hepatocyte-specific PTEN-deficient mice independently of steatosis.

Piguet AC, Saran U, Simillion C, Keller I, Terracciano L, Reeves HL, Dufour JF.

J Hepatol. 2015 Jun;62(6):1296-303. doi: 10.1016/j.jhep.2015.01.017. Epub 2015 Jan 23.

29.

Identification of novel androgen-regulated pathways and mRNA isoforms through genome-wide exon-specific profiling of the LNCaP transcriptome.

Rajan P, Dalgliesh C, Carling PJ, Buist T, Zhang C, Grellscheid SN, Armstrong K, Stockley J, Simillion C, Gaughan L, Kalna G, Zhang MQ, Robson CN, Leung HY, Elliott DJ.

PLoS One. 2011;6(12):e29088. doi: 10.1371/journal.pone.0029088. Epub 2011 Dec 14.

30.

Feedback between p21 and reactive oxygen production is necessary for cell senescence.

Passos JF, Nelson G, Wang C, Richter T, Simillion C, Proctor CJ, Miwa S, Olijslagers S, Hallinan J, Wipat A, Saretzki G, Rudolph KL, Kirkwood TB, von Zglinicki T.

Mol Syst Biol. 2010;6:347. doi: 10.1038/msb.2010.5. Epub 2010 Feb 16.

31.

Cellular senescence: unravelling complexity.

Passos JF, Simillion C, Hallinan J, Wipat A, von Zglinicki T.

Age (Dordr). 2009 Dec;31(4):353-63. doi: 10.1007/s11357-009-9108-1. Review.

32.

i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.

Simillion C, Janssens K, Sterck L, Van de Peer Y.

Bioinformatics. 2008 Jan 1;24(1):127-8. Epub 2007 Oct 17.

PMID:
17947255
33.

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.

Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM Jr, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ.

Science. 2007 Jan 12;315(5809):207-12.

34.

The gain and loss of genes during 600 million years of vertebrate evolution.

Blomme T, Vandepoele K, De Bodt S, Simillion C, Maere S, Van de Peer Y.

Genome Biol. 2006;7(5):R43. Epub 2006 May 24.

35.

Recent developments in computational approaches for uncovering genomic homology.

Simillion C, Vandepoele K, Van de Peer Y.

Bioessays. 2004 Nov;26(11):1225-35. Review.

PMID:
15499578
36.

Building genomic profiles for uncovering segmental homology in the twilight zone.

Simillion C, Vandepoele K, Saeys Y, Van de Peer Y.

Genome Res. 2004 Jun;14(6):1095-106.

37.

Evidence that rice and other cereals are ancient aneuploids.

Vandepoele K, Simillion C, Van de Peer Y.

Plant Cell. 2003 Sep;15(9):2192-202.

38.

Investigating ancient duplication events in the Arabidopsis genome.

Raes J, Vandepoele K, Simillion C, Saeys Y, Van de Peer Y.

J Struct Funct Genomics. 2003;3(1-4):117-29.

PMID:
12836691
39.

Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice.

Vandepoele K, Simillion C, Van de Peer Y.

Trends Genet. 2002 Dec;18(12):606-8.

PMID:
12446138
40.

The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.

Vandepoele K, Saeys Y, Simillion C, Raes J, Van De Peer Y.

Genome Res. 2002 Nov;12(11):1792-801.

41.

The hidden duplication past of Arabidopsis thaliana.

Simillion C, Vandepoele K, Van Montagu MC, Zabeau M, Van de Peer Y.

Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13627-32. Epub 2002 Oct 8.

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