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Items: 1 to 50 of 136


Efficient phenotypic sex classification of zebrafish using machine learning methods.

Hosseini S, Simianer H, Tetens J, Brenig B, Herzog S, Sharifi AR.

Ecol Evol. 2019 Nov 11;9(23):13332-13343. doi: 10.1002/ece3.5788. eCollection 2019 Dec.


Improving Imputation Quality in BEAGLE for Crop and Livestock Data.

Pook T, Mayer M, Geibel J, Weigend S, Cavero D, Schoen CC, Simianer H.

G3 (Bethesda). 2020 Jan 7;10(1):177-188. doi: 10.1534/g3.119.400798.


Phasing quality assessment in a brown layer population through family- and population-based software.

Frioni N, Cavero D, Simianer H, Erbe M.

BMC Genet. 2019 Jul 17;20(1):57. doi: 10.1186/s12863-019-0759-3.


HaploBlocker: Creation of Subgroup-Specific Haplotype Blocks and Libraries.

Pook T, Schlather M, de Los Campos G, Mayer M, Schoen CC, Simianer H.

Genetics. 2019 Aug;212(4):1045-1061. doi: 10.1534/genetics.119.302283. Epub 2019 May 31.


The SYNBREED chicken diversity panel: a global resource to assess chicken diversity at high genomic resolution.

Malomane DK, Simianer H, Weigend A, Reimer C, Schmitt AO, Weigend S.

BMC Genomics. 2019 May 7;20(1):345. doi: 10.1186/s12864-019-5727-9.


Genetic mechanism underlying sexual plasticity and its association with colour patterning in zebrafish (Danio rerio).

Hosseini S, Ha NT, Simianer H, Falker-Gieske C, Brenig B, Franke A, Hörstgen-Schwark G, Tetens J, Herzog S, Sharifi AR.

BMC Genomics. 2019 May 6;20(1):341. doi: 10.1186/s12864-019-5722-1.


Genetics of adaptation in modern chicken.

Qanbari S, Rubin CJ, Maqbool K, Weigend S, Weigend A, Geibel J, Kerje S, Wurmser C, Peterson AT, Brisbin IL Jr, Preisinger R, Fries R, Simianer H, Andersson L.

PLoS Genet. 2019 Apr 29;15(4):e1007989. doi: 10.1371/journal.pgen.1007989. eCollection 2019 Apr.


Integrating Gene Expression Data Into Genomic Prediction.

Li Z, Gao N, Martini JWR, Simianer H.

Front Genet. 2019 Feb 25;10:126. doi: 10.3389/fgene.2019.00126. eCollection 2019.


Analysis of porcine body size variation using re-sequencing data of miniature and large pigs.

Reimer C, Rubin CJ, Sharifi AR, Ha NT, Weigend S, Waldmann KH, Distl O, Pant SD, Fredholm M, Schlather M, Simianer H.

BMC Genomics. 2018 Sep 19;19(1):687. doi: 10.1186/s12864-018-5009-y.


Genome-wide scan reveals population stratification and footprints of recent selection in Nelore cattle.

Cardoso DF, de Albuquerque LG, Reimer C, Qanbari S, Erbe M, do Nascimento AV, Venturini GC, Scalez DCB, Baldi F, de Camargo GMF, Mercadante MEZ, do Santos Gonçalves Cyrillo JN, Simianer H, Tonhati H.

Genet Sel Evol. 2018 May 2;50(1):22. doi: 10.1186/s12711-018-0381-2.


The effect of the H-1 scaling factors τ and ω on the structure of H in the single-step procedure.

Martini JWR, Schrauf MF, Garcia-Baccino CA, Pimentel ECG, Munilla S, Rogberg-Muñoz A, Cantet RJC, Reimer C, Gao N, Wimmer V, Simianer H.

Genet Sel Evol. 2018 Apr 13;50(1):16. doi: 10.1186/s12711-018-0386-x.


A Simple Test Identifies Selection on Complex Traits.

Beissinger T, Kruppa J, Cavero D, Ha NT, Erbe M, Simianer H.

Genetics. 2018 May;209(1):321-333. doi: 10.1534/genetics.118.300857. Epub 2018 Mar 15.


Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies.

Malomane DK, Reimer C, Weigend S, Weigend A, Sharifi AR, Simianer H.

BMC Genomics. 2018 Jan 5;19(1):22. doi: 10.1186/s12864-017-4416-9.


Phenotypic and genetic relationships between age at first calving, its component traits, and survival of heifers up to second calving.

Heise J, Stock KF, Reinhardt F, Ha NT, Simianer H.

J Dairy Sci. 2018 Jan;101(1):425-432. doi: 10.3168/jds.2017-12957. Epub 2017 Nov 8.


Assessing the degree of stratification between closely related Holstein-Friesian populations.

Szyda J, Suchocki T, Qanbari S, Liu Z, Simianer H.

J Appl Genet. 2017 Nov;58(4):521-526. doi: 10.1007/s13353-017-0409-2. Epub 2017 Oct 6.


Liver transcriptome analysis reveals important factors involved in the metabolic adaptation of the transition cow.

Ha NT, Drögemüller C, Reimer C, Schmitz-Hsu F, Bruckmaier RM, Simianer H, Gross JJ.

J Dairy Sci. 2017 Nov;100(11):9311-9323. doi: 10.3168/jds.2016-12454. Epub 2017 Aug 31.


Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes.

Gao N, Martini JWR, Zhang Z, Yuan X, Zhang H, Simianer H, Li J.

Genetics. 2017 Oct;207(2):489-501. doi: 10.1534/genetics.117.300198. Epub 2017 Aug 24.


Special Issue: Quantitative and statistical genetics-papers in honour of Daniel Gianola.

Simianer H, Rosa GJM, Mäki-Tanila A.

J Anim Breed Genet. 2017 Jun;134(3):173-174. doi: 10.1111/jbg.12279. No abstract available.


Empirical comparison between different methods for genomic prediction of number of piglets born alive in moderate sized breeding populations.

Fangmann A, Sharifi RA, Heinkel J, Danowski K, Schrade H, Erbe M, Simianer H.

J Anim Sci. 2017 Apr;95(4):1434-1443. doi: 10.2527/jas.2016.0991.


Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure.

Fleming DS, Weigend S, Simianer H, Weigend A, Rothschild M, Schmidt C, Ashwell C, Persia M, Reecy J, Lamont SJ.

G3 (Bethesda). 2017 May 5;7(5):1525-1537. doi: 10.1534/g3.117.041228.


A reaction norm sire model to study the effect of metabolic challenge in early lactation on the functional longevity of dairy cows.

Ha NT, Sharifi AR, Heise J, Schlather M, Schnyder U, Gross JJ, Schmitz-Hsu F, Bruckmaier RM, Simianer H.

J Dairy Sci. 2017 May;100(5):3742-3753. doi: 10.3168/jds.2016-12031. Epub 2017 Mar 9.


Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture.

Ni G, Cavero D, Fangmann A, Erbe M, Simianer H.

Genet Sel Evol. 2017 Jan 16;49(1):8. doi: 10.1186/s12711-016-0277-y.


Genomic prediction with epistasis models: on the marker-coding-dependent performance of the extended GBLUP and properties of the categorical epistasis model (CE).

Martini JW, Gao N, Cardoso DF, Wimmer V, Erbe M, Cantet RJ, Simianer H.

BMC Bioinformatics. 2017 Jan 3;18(1):3. doi: 10.1186/s12859-016-1439-1.


ICQG 5 on Madison's Isthmus links genomics and statistics of complex traits.

Simianer H, Sørensen P.

J Anim Breed Genet. 2016 Aug;133(4):249-50. doi: 10.1111/jbg.12231. No abstract available.


Epistasis and covariance: how gene interaction translates into genomic relationship.

Martini JW, Wimmer V, Erbe M, Simianer H.

Theor Appl Genet. 2016 May;129(5):963-76. doi: 10.1007/s00122-016-2675-5. Epub 2016 Feb 16.


Can multi-subpopulation reference sets improve the genomic predictive ability for pigs?

Fangmann A, Bergfelder-Drüing S, Tholen E, Simianer H, Erbe M.

J Anim Sci. 2015 Dec;93(12):5618-30. doi: 10.2527/jas.2015-9508.


The genetic structure of longevity in dairy cows.

Heise J, Liu Z, Stock KF, Rensing S, Reinhardt F, Simianer H.

J Dairy Sci. 2016 Feb;99(2):1253-1265. doi: 10.3168/jds.2015-10163. Epub 2015 Nov 28.


Parallel Selection Revealed by Population Sequencing in Chicken.

Qanbari S, Seidel M, Strom TM, Mayer KF, Preisinger R, Simianer H.

Genome Biol Evol. 2015 Nov 13;7(12):3299-306. doi: 10.1093/gbe/evv222.


A Scale-Corrected Comparison of Linkage Disequilibrium Levels between Genic and Non-Genic Regions.

Berger S, Schlather M, de los Campos G, Weigend S, Preisinger R, Erbe M, Simianer H.

PLoS One. 2015 Oct 30;10(10):e0141216. doi: 10.1371/journal.pone.0141216. eCollection 2015.


Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken.

Ni G, Strom TM, Pausch H, Reimer C, Preisinger R, Simianer H, Erbe M.

BMC Genomics. 2015 Oct 21;16:824. doi: 10.1186/s12864-015-2059-2.


Alternative strategies for genetic analyses of milk flow in dairy cattle.

Santos L, Brügemann K, Simianer H, König S.

J Dairy Sci. 2015 Nov;98(11):8209-22. doi: 10.3168/jds.2015-9821. Epub 2015 Sep 9.


Using the variability of linkage disequilibrium between subpopulations to infer sweeps and epistatic selection in a diverse panel of chickens.

Beissinger TM, Gholami M, Erbe M, Weigend S, Weigend A, de Leon N, Gianola D, Simianer H.

Heredity (Edinb). 2016 Feb;116(2):158-66. doi: 10.1038/hdy.2015.81. Epub 2015 Sep 9.


Correction: Accounting for Genetic Architecture Improves Sequence Based Genomic Prediction for a Drosophila Fitness Trait.

Ober U, Huang W, Magwire M, Schlather M, Simianer H, Mackay TF.

PLoS One. 2015 Jul 13;10(7):e0132980. doi: 10.1371/journal.pone.0132980. eCollection 2015.


Genome Scan for Selection in Structured Layer Chicken Populations Exploiting Linkage Disequilibrium Information.

Gholami M, Reimer C, Erbe M, Preisinger R, Weigend A, Weigend S, Servin B, Simianer H.

PLoS One. 2015 Jul 7;10(7):e0130497. doi: 10.1371/journal.pone.0130497. eCollection 2015.


Maternal genealogical patterns of chicken breeds sampled in Europe.

Lyimo CM, Weigend A, Msoffe PL, Hocking PM, Simianer H, Weigend S.

Anim Genet. 2015 Aug;46(4):447-51. doi: 10.1111/age.12304. Epub 2015 Jun 9.


Simulation, prediction, and genetic analyses of daily methane emissions in dairy cattle.

Yin T, Pinent T, Brügemann K, Simianer H, König S.

J Dairy Sci. 2015 Aug;98(8):5748-62. doi: 10.3168/jds.2014-8618. Epub 2015 May 28.


Properties of different selection signature statistics and a new strategy for combining them.

Ma Y, Ding X, Qanbari S, Weigend S, Zhang Q, Simianer H.

Heredity (Edinb). 2015 Nov;115(5):426-36. doi: 10.1038/hdy.2015.42. Epub 2015 May 20.


Accounting for genetic architecture improves sequence based genomic prediction for a Drosophila fitness trait.

Ober U, Huang W, Magwire M, Schlather M, Simianer H, Mackay TF.

PLoS One. 2015 May 7;10(5):e0126880. doi: 10.1371/journal.pone.0126880. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0132980.


Gene-based mapping and pathway analysis of metabolic traits in dairy cows.

Ha NT, Gross JJ, van Dorland A, Tetens J, Thaller G, Schlather M, Bruckmaier R, Simianer H.

PLoS One. 2015 Mar 19;10(3):e0122325. doi: 10.1371/journal.pone.0122325. eCollection 2015.


A genome-wide association study in large white and landrace pig populations for number piglets born alive.

Bergfelder-Drüing S, Grosse-Brinkhaus C, Lind B, Erbe M, Schellander K, Simianer H, Tholen E.

PLoS One. 2015 Mar 17;10(3):e0117468. doi: 10.1371/journal.pone.0117468. eCollection 2015.


Accuracy of whole-genome prediction using a genetic architecture-enhanced variance-covariance matrix.

Zhang Z, Erbe M, He J, Ober U, Gao N, Zhang H, Simianer H, Li J.

G3 (Bethesda). 2015 Feb 9;5(4):615-27. doi: 10.1534/g3.114.016261.


Resemblance between two relatives – animal and plant breeding.

Schön CC, Simianer H.

J Anim Breed Genet. 2015 Feb;132(1):1-2. doi: 10.1111/jbg.12137. No abstract available.


Effectiveness of shrinkage and variable selection methods for the prediction of complex human traits using data from distantly related individuals.

Berger S, Pérez-Rodríguez P, Veturi Y, Simianer H, de los Campos G.

Ann Hum Genet. 2015 Mar;79(2):122-35. doi: 10.1111/ahg.12099. Epub 2015 Jan 20. Erratum in: Ann Hum Genet. 2018 Mar;82(2):127.


Global diversity and genetic contributions of chicken populations from African, Asian and European regions.

Lyimo CM, Weigend A, Msoffe PL, Eding H, Simianer H, Weigend S.

Anim Genet. 2014 Dec;45(6):836-48. doi: 10.1111/age.12230. Epub 2014 Oct 14.


Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize.

Technow F, Schrag TA, Schipprack W, Bauer E, Simianer H, Melchinger AE.

Genetics. 2014 Aug;197(4):1343-55. doi: 10.1534/genetics.114.165860. Epub 2014 May 21.


Population genomic analyses based on 1 million SNPs in commercial egg layers.

Gholami M, Erbe M, Gärke C, Preisinger R, Weigend A, Weigend S, Simianer H.

PLoS One. 2014 Apr 16;9(4):e94509. doi: 10.1371/journal.pone.0094509. eCollection 2014.


Assessing the impact of natural service bulls and genotype by environment interactions on genetic gain and inbreeding in organic dairy cattle genomic breeding programs.

Yin T, Wensch-Dorendorf M, Simianer H, Swalve HH, König S.

Animal. 2014 Jun;8(6):877-86. doi: 10.1017/S1751731114000718. Epub 2014 Apr 4.


Footprints of recent selection and variability in breed composition in the Göttingen Minipig genome.

Gärke C, Ytournel F, Sharifi AR, Pimentel EC, Ludwig A, Simianer H.

Anim Genet. 2014 Jun;45(3):381-91. doi: 10.1111/age.12150. Epub 2014 Mar 29.


Improving the accuracy of whole genome prediction for complex traits using the results of genome wide association studies.

Zhang Z, Ober U, Erbe M, Zhang H, Gao N, He J, Li J, Simianer H.

PLoS One. 2014 Mar 24;9(3):e93017. doi: 10.1371/journal.pone.0093017. eCollection 2014.

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