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Items: 1 to 50 of 88

1.

Differential impact of top-down and bottom-up forces in structuring freshwater bacterial communities.

Pradeep Ram AS, Keshri J, Sime-Ngando T.

FEMS Microbiol Ecol. 2020 Feb 1;96(2). pii: fiaa005. doi: 10.1093/femsec/fiaa005.

PMID:
31922543
2.

Discovery of High Abundances of Aster-Like Nanoparticles in Pelagic Environments: Characterization and Dynamics.

Colombet J, Billard H, Viguès B, Balor S, Boulé C, Geay L, Benzerara K, Menguy N, Ilango G, Fuster M, Enault F, Bardot C, Gautier V, Pradeep Ram AS, Sime-Ngando T.

Front Microbiol. 2019 Oct 15;10:2376. doi: 10.3389/fmicb.2019.02376. eCollection 2019.

3.

Reducing the ionizing radiation background does not significantly affect the evolution of Escherichia coli populations over 500 generations.

Lampe N, Marin P, Coulon M, Micheau P, Maigne L, Sarramia D, Piquemal F, Incerti S, Biron DG, Ghio C, Sime-Ngando T, Hindre T, Breton V.

Sci Rep. 2019 Oct 17;9(1):14891. doi: 10.1038/s41598-019-51519-9.

4.

Novel haloarchaeal viruses from Lake Retba infecting Haloferax and Halorubrum species.

Mizuno CM, Prajapati B, Lucas-Staat S, Sime-Ngando T, Forterre P, Bamford DH, Prangishvili D, Krupovic M, Oksanen HM.

Environ Microbiol. 2019 Jun;21(6):2129-2147. doi: 10.1111/1462-2920.14604. Epub 2019 Apr 14.

PMID:
30920125
5.

Hygroregulation, a key ability for eusocial insects: Native Western European honeybees as a case study.

Eouzan I, Garnery L, Pinto MA, Delalande D, Neves CJ, Fabre F, Lesobre J, Houte S, Estonba A, Montes I, Sime-Ngando T, Biron DG.

PLoS One. 2019 Feb 8;14(2):e0200048. doi: 10.1371/journal.pone.0200048. eCollection 2019.

6.

High Incidence of Lysogeny in the Oxygen Minimum Zones of the Arabian Sea (Southwest Coast of India).

Parvathi A, Jasna V, Aparna S, Pradeep Ram AS, Aswathy VK, Balachandran KK, Muraleedharan KR, Mathew D, Sime-Ngando T.

Viruses. 2018 Oct 27;10(11). pii: E588. doi: 10.3390/v10110588.

7.

Rediscovering Zygorhizidium affluens Canter: Molecular Taxonomy, Infectious Cycle, and Cryopreservation of a Chytrid Infecting the Bloom-Forming Diatom Asterionella formosa.

Rad-Menéndez C, Gerphagnon M, Garvetto A, Arce P, Badis Y, Sime-Ngando T, Gachon CMM.

Appl Environ Microbiol. 2018 Nov 15;84(23). pii: e01826-18. doi: 10.1128/AEM.01826-18. Print 2018 Dec 1.

8.

Morphology and infraciliature of two new earthworm ciliates, Hoplitophrya polymorphus sp. nov. and Anoplophrya simplex sp. nov. (Ciliophora: Oligohymenophorea: Astomatia).

Nana PA, Fokam Z, ViguÈs B, Bricheux G, Aghaindum GA, Ngassam P, Nola M, Sime-Ngando T.

Zootaxa. 2018 Mar 7;4392(1):169-178. doi: 10.11646/zootaxa.4392.1.9.

PMID:
29690422
9.

Differential impact of lytic viruses on prokaryotic morphopopulations in a tropical estuarine system (Cochin estuary, India).

Jasna V, Pradeep Ram AS, Parvathi A, Sime-Ngando T.

PLoS One. 2018 Mar 13;13(3):e0194020. doi: 10.1371/journal.pone.0194020. eCollection 2018.

10.

Microbial parasites make cyanobacteria blooms less of a trophic dead end than commonly assumed.

Haraldsson M, Gerphagnon M, Bazin P, Colombet J, Tecchio S, Sime-Ngando T, Niquil N.

ISME J. 2018 Apr;12(4):1008-1020. doi: 10.1038/s41396-018-0045-9. Epub 2018 Feb 7.

11.

Taxonomical Resolution and Distribution of Bacterioplankton Along the Vertical Gradient Reveals Pronounced Spatiotemporal Patterns in Contrasted Temperate Freshwater Lakes.

Keshri J, Pradeep Ram AS, Nana PA, Sime-Ngando T.

Microb Ecol. 2018 Aug;76(2):372-386. doi: 10.1007/s00248-018-1143-y. Epub 2018 Jan 16.

PMID:
29340714
12.

Distinctive Patterns in the Taxonomical Resolution of Bacterioplankton in the Sediment and Pore Waters of Contrasted Freshwater Lakes.

Keshri J, Pradeep Ram AS, Sime-Ngando T.

Microb Ecol. 2018 Apr;75(3):662-673. doi: 10.1007/s00248-017-1074-z. Epub 2017 Sep 17.

PMID:
28920165
13.

Differential impact of lytic viruses on the taxonomical resolution of freshwater bacterioplankton community structure.

Keshri J, Pradeep Ram AS, Colombet J, Perriere F, Thouvenot A, Sime-Ngando T.

Water Res. 2017 Nov 1;124:129-138. doi: 10.1016/j.watres.2017.07.053. Epub 2017 Jul 24.

PMID:
28753495
14.

Spatial and temporal changes of parasitic chytrids of cyanobacteria.

Gerphagnon M, Colombet J, Latour D, Sime-Ngando T.

Sci Rep. 2017 Jul 20;7(1):6056. doi: 10.1038/s41598-017-06273-1.

15.

Understanding low radiation background biology through controlled evolution experiments.

Lampe N, Breton V, Sarramia D, Sime-Ngando T, Biron DG.

Evol Appl. 2017 Jun 7;10(7):658-666. doi: 10.1111/eva.12491. eCollection 2017 Aug.

16.

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs.

Frenken T, Alacid E, Berger SA, Bourne EC, Gerphagnon M, Grossart HP, Gsell AS, Ibelings BW, Kagami M, Küpper FC, Letcher PM, Loyau A, Miki T, Nejstgaard JC, Rasconi S, Reñé A, Rohrlack T, Rojas-Jimenez K, Schmeller DS, Scholz B, Seto K, Sime-Ngando T, Sukenik A, Van de Waal DB, Van den Wyngaert S, Van Donk E, Wolinska J, Wurzbacher C, Agha R.

Environ Microbiol. 2017 Oct;19(10):3802-3822. doi: 10.1111/1462-2920.13827. Epub 2017 Jul 13. Review.

PMID:
28618196
17.

Viral-Induced Mortality of Prokaryotes in a Tropical Monsoonal Estuary.

Jasna V, Parvathi A, Pradeep Ram AS, Balachandran KK, Madhu NV, Nair M, Jyothibabu R, Jayalakshmy KV, Revichandran C, Sime-Ngando T.

Front Microbiol. 2017 May 23;8:895. doi: 10.3389/fmicb.2017.00895. eCollection 2017.

18.

Genotypic, size and morphological diversity of virioplankton in a deep oligomesotrophic freshwater lake (Lac Pavin, France).

Colombet J, Robin A, Sime-Ngando T.

J Environ Sci (China). 2017 Mar;53:48-59. doi: 10.1016/j.jes.2016.05.016. Epub 2016 Jun 17.

PMID:
28372760
19.

Functional Responses of Bacterioplankton Diversity and Metabolism to Experimental Bottom-Up and Top-Down Forcings.

Pradeep Ram AS, Chaibi-Slouma S, Keshri J, Colombet J, Sime-Ngando T.

Microb Ecol. 2016 Aug;72(2):347-58. doi: 10.1007/s00248-016-0782-0. Epub 2016 May 14.

PMID:
27179523
20.

Viral Regulation of Prokaryotic Carbon Metabolism in a Hypereutrophic Freshwater Reservoir Ecosystem (Villerest, France).

Pradeep Ram AS, Colombet J, Perriere F, Thouvenot A, Sime-Ngando T.

Front Microbiol. 2016 Feb 9;7:81. doi: 10.3389/fmicb.2016.00081. eCollection 2016.

21.

Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat.

Ballaud F, Dufresne A, Francez AJ, Colombet J, Sime-Ngando T, Quaiser A.

Front Microbiol. 2016 Jan 6;6:1494. doi: 10.3389/fmicb.2015.01494. eCollection 2015.

22.

Microbial diversity in support of anaerobic biomass valorization.

Jobard M, Pessiot J, Nouaille R, Fonty G, Sime-Ngando T.

Crit Rev Biotechnol. 2017 Feb;37(1):1-10. Epub 2015 Oct 30. Review.

PMID:
26516020
23.

Analysis of metagenomic data reveals common features of halophilic viral communities across continents.

Roux S, Enault F, Ravet V, Colombet J, Bettarel Y, Auguet JC, Bouvier T, Lucas-Staat S, Vellet A, Prangishvili D, Forterre P, Debroas D, Sime-Ngando T.

Environ Microbiol. 2016 Mar;18(3):889-903. doi: 10.1111/1462-2920.13084. Epub 2015 Dec 10.

PMID:
26472517
24.

Editorial: Roles and mechanisms of parasitism in aquatic microbial communities.

Sime-Ngando T, Lafferty KD, Biron DG.

Front Microbiol. 2015 May 12;6:446. doi: 10.3389/fmicb.2015.00446. eCollection 2015. No abstract available.

25.

Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands.

Quaiser A, Dufresne A, Ballaud F, Roux S, Zivanovic Y, Colombet J, Sime-Ngando T, Francez AJ.

Front Microbiol. 2015 Apr 28;6:375. doi: 10.3389/fmicb.2015.00375. eCollection 2015.

26.

Seasonal variations of marine protist community structure based on taxon-specific traits using the eastern English Channel as a model coastal system.

Genitsaris S, Monchy S, Viscogliosi E, Sime-Ngando T, Ferreira S, Christaki U.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv034. doi: 10.1093/femsec/fiv034. Epub 2015 Mar 30.

PMID:
25873460
27.

Microbial players involved in the decline of filamentous and colonial cyanobacterial blooms with a focus on fungal parasitism.

Gerphagnon M, Macarthur DJ, Latour D, Gachon CM, Van Ogtrop F, Gleason FH, Sime-Ngando T.

Environ Microbiol. 2015 Aug;17(8):2573-87. doi: 10.1111/1462-2920.12860. Epub 2015 Jun 11. Review.

PMID:
25818470
28.

Viral and grazer regulation of prokaryotic growth efficiency in temperate freshwater pelagic environments.

Pradeep Ram AS, Colombet J, Perriere F, Thouvenot A, Sime-Ngando T.

FEMS Microbiol Ecol. 2015 Feb;91(2):1-12. doi: 10.1093/femsec/fiv002. Epub 2015 Jan 11.

PMID:
25764557
29.

Erratum to: Linking Host Prokaryotic Physiology to Viral Lifestyle Dynamics in a Temperate Freshwater Lake (Lake Pavin, France).

Palesse S, Colombet J, Pradeep Ram AS, Sime-Ngando T.

Microb Ecol. 2015 Jul;70(1):299-300. doi: 10.1007/s00248-014-0555-6. No abstract available.

PMID:
25534983
30.

Microbial diversity supporting dark fermentation of waste.

Jobard M, Pessiot J, Nouaille R, Sime-Ngando T.

Trends Biotechnol. 2014 Nov;32(11):549-550. doi: 10.1016/j.tibtech.2014.09.005. Epub 2014 Oct 1.

PMID:
25282034
31.

Environmental bacteriophages: viruses of microbes in aquatic ecosystems.

Sime-Ngando T.

Front Microbiol. 2014 Jul 24;5:355. doi: 10.3389/fmicb.2014.00355. eCollection 2014. Review.

32.

Linking host prokaryotic physiology to viral lifestyle dynamics in a temperate freshwater lake (Lake Pavin, France).

Palesse S, Colombet J, Pradeep Ram AS, Sime-Ngando T.

Microb Ecol. 2014 Nov;68(4):740-50. doi: 10.1007/s00248-014-0441-2. Epub 2014 Jun 10. Erratum in: Microb Ecol. 2015 Jul;70(1):299-300.

PMID:
24910014
33.

Ecological functions of zoosporic hyperparasites.

Gleason FH, Lilje O, Marano AV, Sime-Ngando T, Sullivan BK, Kirchmair M, Neuhauser S.

Front Microbiol. 2014 May 28;5:244. doi: 10.3389/fmicb.2014.00244. eCollection 2014. Review.

34.

Parasitic chytrids sustain zooplankton growth during inedible algal bloom.

Rasconi S, Grami B, Niquil N, Jobard M, Sime-Ngando T.

Front Microbiol. 2014 May 23;5:229. doi: 10.3389/fmicb.2014.00229. eCollection 2014.

35.

Bacterial carbon dependence on freshly produced phytoplankton exudates under different nutrient availability and grazing pressure conditions in coastal marine waters.

Fouilland E, Tolosa I, Bonnet D, Bouvier C, Bouvier T, Bouvy M, Got P, Le Floc'h E, Mostajir B, Roques C, Sempéré R, Sime-Ngando T, Vidussi F.

FEMS Microbiol Ecol. 2014 Mar;87(3):757-69.

36.

Mixture of Sodium Hypochlorite and Hydrogen Peroxide on Adhered Aeromonas hydrophila to Solid Substrate in Water: Impact of Concentration and Assessment of the Synergistic Effect.

Lontsi Djimeli C, Tamsa Arfao A, Noah Ewoti OV, Nougang ME, Moungang ML, Bricheux G, Nola M, Sime-Ngando T.

Int J Bacteriol. 2014;2014:121367. doi: 10.1155/2014/121367. Epub 2014 Mar 3.

37.

Winter-summer succession of unicellular eukaryotes in a meso-eutrophic coastal system.

Christaki U, Kormas KA, Genitsaris S, Georges C, Sime-Ngando T, Viscogliosi E, Monchy S.

Microb Ecol. 2014 Jan;67(1):13-23. doi: 10.1007/s00248-013-0290-4. Epub 2013 Oct 1.

PMID:
24081282
38.

Variable viral and grazer control of prokaryotic growth efficiency in temperate freshwater lakes (French Massif Central).

Ram AS, Palesse S, Colombet J, Sabart M, Perriere F, Sime-Ngando T.

Microb Ecol. 2013 Nov;66(4):906-16. doi: 10.1007/s00248-013-0289-x. Epub 2013 Sep 24.

PMID:
24061344
39.

A double staining method using SYTOX green and calcofluor white for studying fungal parasites of phytoplankton.

Gerphagnon M, Latour D, Colombet J, Sime-Ngando T.

Appl Environ Microbiol. 2013 Jul;79(13):3943-51. doi: 10.1128/AEM.00696-13. Epub 2013 Apr 19.

40.

Fungal parasitism: life cycle, dynamics and impact on cyanobacterial blooms.

Gerphagnon M, Latour D, Colombet J, Sime-Ngando T.

PLoS One. 2013 Apr 12;8(4):e60894. doi: 10.1371/journal.pone.0060894. Print 2013.

41.

Phytoplankton chytridiomycosis: fungal parasites of phytoplankton and their imprints on the food web dynamics.

Sime-Ngando T.

Front Microbiol. 2012 Oct 12;3:361. doi: 10.3389/fmicb.2012.00361. eCollection 2012.

42.

Microplanktonic community structure in a coastal system relative to a Phaeocystis bloom inferred from morphological and tag pyrosequencing methods.

Monchy S, Grattepanche JD, Breton E, Meloni D, Sanciu G, Chabé M, Delhaes L, Viscogliosi E, Sime-Ngando T, Christaki U.

PLoS One. 2012;7(6):e39924. doi: 10.1371/journal.pone.0039924. Epub 2012 Jun 29.

43.

Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat.

Borrel G, Colombet J, Robin A, Lehours AC, Prangishvili D, Sime-Ngando T.

ISME J. 2012 Nov;6(11):2119-27. doi: 10.1038/ismej.2012.49. Epub 2012 May 31.

44.

Molecular and morphological diversity of fungi and the associated functions in three European nearby lakes.

Jobard M, Rasconi S, Solinhac L, Cauchie HM, Sime-Ngando T.

Environ Microbiol. 2012 Sep;14(9):2480-94. doi: 10.1111/j.1462-2920.2012.02771.x. Epub 2012 May 9.

PMID:
22568577
45.

The airway microbiota in cystic fibrosis: a complex fungal and bacterial community--implications for therapeutic management.

Delhaes L, Monchy S, Fréalle E, Hubans C, Salleron J, Leroy S, Prevotat A, Wallet F, Wallaert B, Dei-Cas E, Sime-Ngando T, Chabé M, Viscogliosi E.

PLoS One. 2012;7(4):e36313. doi: 10.1371/journal.pone.0036313. Epub 2012 Apr 27.

46.

Assessing the diversity and specificity of two freshwater viral communities through metagenomics.

Roux S, Enault F, Robin A, Ravet V, Personnic S, Theil S, Colombet J, Sime-Ngando T, Debroas D.

PLoS One. 2012;7(3):e33641. doi: 10.1371/journal.pone.0033641. Epub 2012 Mar 14.

47.

Seasonal depth-related gradients in virioplankton: lytic activity and comparison with protistan grazing potential in Lake Pavin (France).

Colombet J, Sime-Ngando T.

Microb Ecol. 2012 Jul;64(1):67-78. doi: 10.1007/s00248-012-0032-z. Epub 2012 Mar 6.

PMID:
22391799
48.

Quantitative methods for the analysis of zoosporic fungi.

Marano AV, Gleason FH, Bärlocher F, Pires-Zottarelli CL, Lilje O, Schmidt SK, Rasconi S, Kagami M, Barrera MD, Sime-Ngando T, Boussiba S, de Souza JI, Edwards JE.

J Microbiol Methods. 2012 Apr;89(1):22-32. doi: 10.1016/j.mimet.2012.02.003. Epub 2012 Feb 16. Review.

PMID:
22360942
50.

Phytoplankton chytridiomycosis: community structure and infectivity of fungal parasites in aquatic ecosystems.

Rasconi S, Niquil N, Sime-Ngando T.

Environ Microbiol. 2012 Aug;14(8):2151-70. doi: 10.1111/j.1462-2920.2011.02690.x. Epub 2012 Feb 7.

PMID:
22309120

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