Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 75

1.

Control of DNA replication timing in the 3D genome.

Marchal C, Sima J, Gilbert DM.

Nat Rev Mol Cell Biol. 2019 Sep 2. doi: 10.1038/s41580-019-0162-y. [Epub ahead of print] Review.

PMID:
31477886
2.

Efficacy and tolerability of stereotactic body radiotherapy for lung metastases in three patients with pediatric malignancies.

Deck J, Eastwick G, Sima J, Raymond A, Bogart J, Aridgides P.

Onco Targets Ther. 2019 May 15;12:3723-3727. doi: 10.2147/OTT.S194812. eCollection 2019.

3.

Subrecursive neural networks.

Šíma J.

Neural Netw. 2019 Aug;116:208-223. doi: 10.1016/j.neunet.2019.04.019. Epub 2019 May 20.

PMID:
31121419
4.

Reversible dielectric switching behavior of a 1D coordination polymer induced by photo and thermal irradiation.

Sima JY, Li HX, Young DJ, Braunstein P, Lang JP.

Chem Commun (Camb). 2019 Mar 19;55(24):3532-3535. doi: 10.1039/c9cc00864k.

PMID:
30840002
5.

The fate of selected heavy metals and arsenic in a constructed wetland.

Šíma J, Svoboda L, Šeda M, Krejsa J, Jahodová J.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2019;54(1):56-64. doi: 10.1080/10934529.2018.1515519. Epub 2019 Jan 21.

PMID:
30663931
6.

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.

Sima J, Chakraborty A, Dileep V, Michalski M, Klein KN, Holcomb NP, Turner JL, Paulsen MT, Rivera-Mulia JC, Trevilla-Garcia C, Bartlett DA, Zhao PA, Washburn BK, Nora EP, Kraft K, Mundlos S, Bruneau BG, Ljungman M, Fraser P, Ay F, Gilbert DM.

Cell. 2019 Feb 7;176(4):816-830.e18. doi: 10.1016/j.cell.2018.11.036. Epub 2018 Dec 27.

PMID:
30595451
7.

The Accumulation of Risk and Essential Elements in Edible Mushrooms Chlorophyllum rhacodes, Suillus grevillei, Imleria badia, and Xerocomellus chrysenteron Growing in the Czech Republic.

Šíma J, Vondruška J, Svoboda L, Šeda M, Rokos L.

Chem Biodivers. 2019 Feb;16(2):e1800478. doi: 10.1002/cbdv.201800478. Epub 2019 Feb 4.

PMID:
30517766
8.

Eda-activated RelB recruits an SWI/SNF (BAF) chromatin-remodeling complex and initiates gene transcription in skin appendage formation.

Sima J, Yan Z, Chen Y, Lehrmann E, Zhang Y, Nagaraja R, Wang W, Wang Z, Schlessinger D.

Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):8173-8178. doi: 10.1073/pnas.1800930115. Epub 2018 Jul 23.

9.

Extraction of value-added components from food industry based and agro-forest biowastes by deep eutectic solvents.

Jablonský M, Škulcová A, Malvis A, Šima J.

J Biotechnol. 2018 Sep 20;282:46-66. doi: 10.1016/j.jbiotec.2018.06.349. Epub 2018 Jun 30. Review.

PMID:
29969642
10.

Cellular senescence induces replication stress with almost no affect on DNA replication timing.

Rivera-Mulia JC, Schwerer H, Besnard E, Desprat R, Trevilla-Garcia C, Sima J, Bensadoun P, Zouaoui A, Gilbert DM, Lemaitre JM.

Cell Cycle. 2018;17(13):1667-1681. doi: 10.1080/15384101.2018.1491235. Epub 2018 Aug 21.

11.

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.

Marchal C, Sasaki T, Vera D, Wilson K, Sima J, Rivera-Mulia JC, Trevilla-García C, Nogues C, Nafie E, Gilbert DM.

Nat Protoc. 2018 May;13(5):819-839. doi: 10.1038/nprot.2017.148. Epub 2018 Mar 29.

12.

Bacterial artificial chromosomes establish replication timing and sub-nuclear compartment de novo as extra-chromosomal vectors.

Sima J, Bartlett DA, Gordon MR, Gilbert DM.

Nucleic Acids Res. 2018 Feb 28;46(4):1810-1820. doi: 10.1093/nar/gkx1265.

13.
14.

DNA replication timing alterations identify common markers between distinct progeroid diseases.

Rivera-Mulia JC, Desprat R, Trevilla-Garcia C, Cornacchia D, Schwerer H, Sasaki T, Sima J, Fells T, Studer L, Lemaitre JM, Gilbert DM.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E10972-E10980. doi: 10.1073/pnas.1711613114. Epub 2017 Dec 1.

15.

Outcomes of adults and children with primary mediastinal B-cell lymphoma treated with dose-adjusted EPOCH-R.

Giulino-Roth L, O'Donohue T, Chen Z, Bartlett NL, LaCasce A, Martin-Doyle W, Barth MJ, Davies K, Blum KA, Christian B, Casulo C, Smith SM, Godfrey J, Termuhlen A, Oberley MJ, Alexander S, Weitzman S, Appel B, Mizukawa B, Svoboda J, Afify Z, Pauly M, Dave H, Gardner R, Stephens DM, Zeitler WA, Forlenza C, Levine J, Williams ME, Sima JL, Bollard CM, Leonard JP.

Br J Haematol. 2017 Dec;179(5):739-747. doi: 10.1111/bjh.14951. Epub 2017 Oct 29.

16.

Valorisation of softwood bark through extraction of utilizable chemicals. A review.

Jablonsky M, Nosalova J, Sladkova A, Haz A, Kreps F, Valka J, Miertus S, Frecer V, Ondrejovic M, Sima J, Surina I.

Biotechnol Adv. 2017 Nov 1;35(6):726-750. doi: 10.1016/j.biotechadv.2017.07.007. Epub 2017 Jul 21. Review.

PMID:
28739505
17.

Indispensable role of biochar-inherent mineral constituents in its environmental applications: A review.

Xu X, Zhao Y, Sima J, Zhao L, Mašek O, Cao X.

Bioresour Technol. 2017 Oct;241:887-899. doi: 10.1016/j.biortech.2017.06.023. Epub 2017 Jun 8. Review.

PMID:
28629105
18.

Development of phosphate rock integrated with iron amendment for simultaneous immobilization of Zn and Cr(VI) in an electroplating contaminated soil.

Zhao L, Ding Z, Sima J, Xu X, Cao X.

Chemosphere. 2017 Sep;182:15-21. doi: 10.1016/j.chemosphere.2017.05.004. Epub 2017 May 3.

PMID:
28482257
19.

Immobilization of Irpex lacteus to liquid-core alginate beads and their application to degradation of pollutants.

Šíma J, Milne R, Novotný Č, Hasal P.

Folia Microbiol (Praha). 2017 Jul;62(4):335-342. doi: 10.1007/s12223-017-0504-0. Epub 2017 Feb 17.

PMID:
28213748
20.

Transformation and bioaccessibility of lead induced by steamed bread feed in the gastrointestinal tract.

Kan J, Sima J, Cao X.

Ecotoxicol Environ Saf. 2017 Mar;137:158-164. doi: 10.1016/j.ecoenv.2016.11.025. Epub 2016 Dec 19.

PMID:
27930968
21.

Molecular dynamics of Dkk4 modulates Wnt action and regulates meibomian gland development.

Sima J, Piao Y, Chen Y, Schlessinger D.

Development. 2016 Dec 15;143(24):4723-4735. Epub 2016 Nov 18.

22.

Removal of Selected Metals from Wastewater Using a Constructed Wetland.

Šíma J, Svoboda L, Pomijová Z.

Chem Biodivers. 2016 May;13(5):582-90. doi: 10.1002/cbdv.201500189.

PMID:
27119624
23.

Overexpression of BTG2 suppresses growth, migration, and invasion of human renal carcinoma cells in vitro.

Sima J, Zhang B, Sima XY, Mao YX.

Neoplasma. 2016;63(3):385-93. doi: 10.4149/307_150822N455.

PMID:
26925784
24.

Influence of the gas composition on the efficiency of ammonia stripping of biogas digestate.

Bousek J, Scroccaro D, Sima J, Weissenbacher N, Fuchs W.

Bioresour Technol. 2016 Mar;203:259-66. doi: 10.1016/j.biortech.2015.12.046. Epub 2015 Dec 19.

25.

Identification of potassium and chloride channels in eccrine sweat glands.

Cui CY, Sima J, Yin M, Michel M, Kunisada M, Schlessinger D.

J Dermatol Sci. 2016 Feb;81(2):129-31. doi: 10.1016/j.jdermsci.2015.11.001. Epub 2015 Nov 10. No abstract available.

26.

Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.

Dileep V, Rivera-Mulia JC, Sima J, Gilbert DM.

Cold Spring Harb Symp Quant Biol. 2015;80:53-63. doi: 10.1101/sqb.2015.80.027284. Epub 2015 Nov 20. Review.

PMID:
26590169
27.

Toxicity characteristic leaching procedure over- or under-estimates leachability of lead in phosphate-amended contaminated soils.

Sima J, Cao X, Zhao L, Luo Q.

Chemosphere. 2015 Nov;138:744-50. doi: 10.1016/j.chemosphere.2015.07.028. Epub 2015 Aug 10.

PMID:
26275597
28.

Many paths lead chromatin to the nuclear periphery.

Gordon MR, Pope BD, Sima J, Gilbert DM.

Bioessays. 2015 Aug;37(8):862-6. doi: 10.1002/bies.201500034. Epub 2015 Jun 8. Review.

29.

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program.

Dileep V, Ay F, Sima J, Vera DL, Noble WS, Gilbert DM.

Genome Res. 2015 Aug;25(8):1104-13. doi: 10.1101/gr.183699.114. Epub 2015 May 20.

30.

Overexpression of Numb suppresses growth, migration, and invasion of human clear cell renal cell carcinoma cells.

Sima J, Zhang B, Yu Y, Sima X, Mao Y.

Tumour Biol. 2015 Apr;36(4):2885-92. doi: 10.1007/s13277-014-2918-5. Epub 2014 Dec 6.

PMID:
25480416
31.

Involvement of Wnt, Eda and Shh at defined stages of sweat gland development.

Cui CY, Yin M, Sima J, Childress V, Michel M, Piao Y, Schlessinger D.

Development. 2014 Oct;141(19):3752-60. doi: 10.1242/dev.109231.

32.

Complex correlations: replication timing and mutational landscapes during cancer and genome evolution.

Sima J, Gilbert DM.

Curr Opin Genet Dev. 2014 Apr;25:93-100. doi: 10.1016/j.gde.2013.11.022. Epub 2014 Mar 2. Review.

33.

Energy complexity of recurrent neural networks.

Síma J.

Neural Comput. 2014 May;26(5):953-73. doi: 10.1162/NECO_a_00579. Epub 2014 Feb 20.

PMID:
24555455
34.

Primary care physician perceptions of adult survivors of childhood cancer.

Sima JL, Perkins SM, Haggstrom DA.

J Pediatr Hematol Oncol. 2014 Mar;36(2):118-24. doi: 10.1097/MPH.0000000000000061.

35.

Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation.

Xu D, Shen W, Guo R, Xue Y, Peng W, Sima J, Yang J, Sharov A, Srikantan S, Yang J, Fox D 3rd, Qian Y, Martindale JL, Piao Y, Machamer J, Joshi SR, Mohanty S, Shaw AC, Lloyd TE, Brown GW, Ko MS, Gorospe M, Zou S, Wang W.

Nat Neurosci. 2013 Sep;16(9):1238-47. doi: 10.1038/nn.3479. Epub 2013 Aug 4.

36.

Differences between Spatial and Visual Mental Representations.

Sima JF, Schultheis H, Barkowsky T.

Front Psychol. 2013 May 8;4:240. doi: 10.3389/fpsyg.2013.00240. eCollection 2013.

37.

Degradation of surface-active compounds in a constructed wetland determined using high performance liquid chromatography and extraction spectrophotometry.

Šíma J, Pazderník M, Tříska J, Svoboda L.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2013;48(5):559-67. doi: 10.1080/10934529.2013.730453.

PMID:
23383641
38.

[Expression analysis of NOTCH1/HES1/PTEN signaling pathway in invasive bladder transitional cell carcinoma].

Sima J, Zhu MY, Ai Q, Zhang C, Yao ZY, Huang QB, Zhang X.

Zhonghua Yi Xue Za Zhi. 2012 Apr 10;92(14):964-7. Chinese.

PMID:
22781569
39.

NS398 induces apoptosis in non-small cell lung cancer cells.

Qiu R, Chen J, Sima J, Shen X, Liu D, Shen J.

J Cancer Res Clin Oncol. 2012 Jan;138(1):119-24. doi: 10.1007/s00432-011-1080-3. Epub 2011 Nov 3.

PMID:
22048655
40.

Removal of nonionic surfactants from wastewater using a constructed wetland.

Síma J, Holcová V.

Chem Biodivers. 2011 Oct;8(10):1819-32. doi: 10.1002/cbdv.201100063.

PMID:
22006711
41.

Effect of fluorine position on the coordinating ability of fluorosalicylic acids--an experimental study complemented with computations.

Szabó-Plánka T, Gyurcsik B, Pálinkó I, Nagy NV, Rockenbauer A, Sípoš R, Sima J, Melník M.

J Inorg Biochem. 2011 Jan;105(1):75-83. doi: 10.1016/j.jinorgbio.2010.09.009.

PMID:
21134605
42.

Environmental regulation of carbon isotope composition and crassulacean acid metabolism in three plant communities along a water availability gradient.

Ricalde MF, Andrade JL, Durán R, Dupuy JM, Simá JL, Us-Santamaría R, Santiago LS.

Oecologia. 2010 Dec;164(4):871-80. doi: 10.1007/s00442-010-1724-z. Epub 2010 Jul 21.

43.

Clinical research of intraoperative image-guidance in endoscopic nasocular operation.

Dou XY, Guo J, Lu YT, Sima J.

Int J Ophthalmol. 2010;3(3):255-6. doi: 10.3980/j.issn.2222-3959.2010.03.17. Epub 2010 Sep 18.

44.

Removal of anionic surfactants from wastewater using a constructed wetland.

Síma J, Havelka M, Holcová V.

Chem Biodivers. 2009 Sep;6(9):1350-63. doi: 10.1002/cbdv.200900108.

PMID:
19774598
45.

Sequential triangle strip generator based on Hopfield networks.

Síma J, Lnĕnicka R.

Neural Comput. 2009 Feb;21(2):583-617. doi: 10.1162/neco.2008.10-07-623.

PMID:
19431270
46.

Redox properties of a constructed wetland: theoretical and practical aspects.

Síma J, Diáková K, Pavelcová L, Havelka M.

Chem Biodivers. 2009 Mar;6(3):341-55. doi: 10.1002/cbdv.200800096.

PMID:
19319861
47.

Equilibria of 3-pyridylmethanol with copper(II). A comparative electron spin resonance study by the decomposition of spectra in liquid and frozen solutions.

Sípos R, Szabó-Plánka T, Rockenbauer A, Nagy NV, Sima J, Melník M, Nagypál I.

J Phys Chem A. 2008 Oct 16;112(41):10280-6. doi: 10.1021/jp805210v. Epub 2008 Sep 10.

PMID:
18781728
48.

Redox processes of sulfur and manganese in a constructed wetland.

Síma J, Diáková K, Holcová V.

Chem Biodivers. 2007 Dec;4(12):2900-12.

PMID:
18081100
49.

Semaphorin-3A guides radial migration of cortical neurons during development.

Chen G, Sima J, Jin M, Wang KY, Xue XJ, Zheng W, Ding YQ, Yuan XB.

Nat Neurosci. 2008 Jan;11(1):36-44. Epub 2007 Dec 2.

PMID:
18059265
50.

Complexation of 5-fluorosalicylic acid with copper(II): a pH-potentiometric, UV-vis spectroscopic, and electron spin resonance study by the two-dimensional simulation of spectra.

Szabó-Plánka T, Gyurcsik B, Nagy NV, Rockenbauer A, Sípos R, Sima J, Melník M.

J Inorg Biochem. 2008 Jan;102(1):101-9. Epub 2007 Jul 24.

PMID:
17720250

Supplemental Content

Support Center