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A quantitative workflow for modeling diversification in material culture.

Gjesfjeld E, Silvestro D, Chang J, Koch B, Foster JG, Alfaro ME.

PLoS One. 2020 Feb 6;15(2):e0227579. doi: 10.1371/journal.pone.0227579. eCollection 2020.


Brain expansion in early hominins predicts carnivore extinctions in East Africa.

Faurby S, Silvestro D, Werdelin L, Antonelli A.

Ecol Lett. 2020 Mar;23(3):537-544. doi: 10.1111/ele.13451. Epub 2020 Jan 13.


A 450 million years long latitudinal gradient in age-dependent extinction.

Silvestro D, Castiglione S, Mondanaro A, Serio C, Melchionna M, Piras P, Di Febbraro M, Carotenuto F, Rook L, Raia P.

Ecol Lett. 2020 Mar;23(3):439-446. doi: 10.1111/ele.13441. Epub 2019 Dec 18.


Slowly but surely: gradual diversification and phenotypic evolution in the hyper-diverse tree fern family Cyatheaceae.

Loiseau O, Weigand A, Noben S, Rolland J, Silvestro D, Kessler M, Lehnert M, Salamin N.

Ann Bot. 2020 Jan 8;125(1):93-103. doi: 10.1093/aob/mcz145.


Depression, apathy and impaired self-awareness following severe traumatic brain injury: a preliminary investigation.

Bivona U, Costa A, Contrada M, Silvestro D, Azicnuda E, Aloisi M, Catania G, Ciurli P, Guariglia C, Caltagirone C, Formisano R, Prigatano GP.

Brain Inj. 2019;33(9):1245-1256. doi: 10.1080/02699052.2019.1641225. Epub 2019 Jul 14.


Detecting the macroevolutionary signal of species interactions.

Harmon LJ, Andreazzi CS, Débarre F, Drury J, Goldberg EE, Martins AB, Melián CJ, Narwani A, Nuismer SL, Pennell MW, Rudman SM, Seehausen O, Silvestro D, Weber M, Matthews B.

J Evol Biol. 2019 Aug;32(8):769-782. doi: 10.1111/jeb.13477. Epub 2019 Jun 14. Review.


Simultaneous Bayesian inference of phylogeny and molecular coevolution.

Meyer X, Dib L, Silvestro D, Salamin N.

Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5027-5036. doi: 10.1073/pnas.1813836116. Epub 2019 Feb 26.


The P5A ATPase Spf1p is stimulated by phosphatidylinositol 4-phosphate and influences cellular sterol homeostasis.

Sørensen DM, Holen HW, Pedersen JT, Martens HJ, Silvestro D, Stanchev LD, Costa SR, Günther Pomorski T, López-Marqués RL, Palmgren M.

Mol Biol Cell. 2019 Apr 15;30(9):1069-1084. doi: 10.1091/mbc.E18-06-0365. Epub 2019 Feb 20.


Closing the gap between palaeontological and neontological speciation and extinction rate estimates.

Silvestro D, Warnock RCM, Gavryushkina A, Stadler T.

Nat Commun. 2018 Dec 7;9(1):5237. doi: 10.1038/s41467-018-07622-y.


Vitamin D5 in Arabidopsis thaliana.

Silvestro D, Villette C, Delecolle J, Olsen CE, Motawia MS, Geoffroy P, Miesch M, Jensen PE, Heintz D, Schaller H.

Sci Rep. 2018 Nov 5;8(1):16348. doi: 10.1038/s41598-018-34775-z.


Conceptual and empirical advances in Neotropical biodiversity research.

Antonelli A, Ariza M, Albert J, Andermann T, Azevedo J, Bacon C, Faurby S, Guedes T, Hoorn C, Lohmann LG, Matos-Maraví P, Ritter CD, Sanmartín I, Silvestro D, Tejedor M, Ter Steege H, Tuomisto H, Werneck FP, Zizka A, Edwards SV.

PeerJ. 2018 Oct 4;6:e5644. doi: 10.7717/peerj.5644. eCollection 2018.


Diversification dynamics of mammalian clades during the K-Pg mass extinction.

Pires MM, Rankin BD, Silvestro D, Quental TB.

Biol Lett. 2018 Sep 26;14(9). pii: 20180458. doi: 10.1098/rsbl.2018.0458.


Changes in Caregivers Lifestyle after Severe Acquired Brain Injury: A Preliminary Investigation.

D'Ippolito M, Aloisi M, Azicnuda E, Silvestro D, Giustini M, Verni F, Formisano R, Bivona U.

Biomed Res Int. 2018 Jul 3;2018:2824081. doi: 10.1155/2018/2824081. eCollection 2018.


A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon Nitraria L.(Nitrariaceae).

Woutersen A, Jardine PE, Bogotá-Angel RG, Zhang HX, Silvestro D, Antonelli A, Gogna E, Erkens RHJ, Gosling WD, Dupont-Nivet G, Hoorn C.

PeerJ. 2018 Jul 19;6:e5055. doi: 10.7717/peerj.5055. eCollection 2018.


Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors.

Silvestro D, Tejedor MF, Serrano-Serrano ML, Loiseau O, Rossier V, Rolland J, Zizka A, Höhna S, Antonelli A, Salamin N.

Syst Biol. 2019 Jan 1;68(1):78-92. doi: 10.1093/sysbio/syy046.


phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R.

Bennett DJ, Hettling H, Silvestro D, Zizka A, Bacon CD, Faurby S, Vos RA, Antonelli A.

Life (Basel). 2018 Jun 5;8(2). pii: E20. doi: 10.3390/life8020020.


Amazonia is the primary source of Neotropical biodiversity.

Antonelli A, Zizka A, Carvalho FA, Scharn R, Bacon CD, Silvestro D, Condamine FL.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6034-6039. doi: 10.1073/pnas.1713819115. Epub 2018 May 14.


Clownfishes evolution below and above the species level.

Rolland J, Silvestro D, Litsios G, Faye L, Salamin N.

Proc Biol Sci. 2018 Feb 28;285(1873). pii: 20171796. doi: 10.1098/rspb.2017.1796.


Publisher Correction: The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity.

Rolland J, Silvestro D, Schluter D, Guisan A, Broenniman O, Salamin N.

Nat Ecol Evol. 2018 Mar;2(3):578. doi: 10.1038/s41559-018-0492-8.


The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity.

Rolland J, Silvestro D, Schluter D, Guisan A, Broennimann O, Salamin N.

Nat Ecol Evol. 2018 Mar;2(3):459-464. doi: 10.1038/s41559-017-0451-9. Epub 2018 Jan 29. Erratum in: Nat Ecol Evol. 2018 Feb 13;:.


Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies.

Hagen O, Andermann T, Quental TB, Antonelli A, Silvestro D.

Syst Biol. 2018 May 1;67(3):458-474. doi: 10.1093/sysbio/syx082.


The Pliocene marine megafauna extinction and its impact on functional diversity.

Pimiento C, Griffin JN, Clements CF, Silvestro D, Varela S, Uhen MD, Jaramillo C.

Nat Ecol Evol. 2017 Aug;1(8):1100-1106. doi: 10.1038/s41559-017-0223-6. Epub 2017 Jun 26.


Environmentally driven extinction and opportunistic origination explain fern diversification patterns.

Lehtonen S, Silvestro D, Karger DN, Scotese C, Tuomisto H, Kessler M, Peña C, Wahlberg N, Antonelli A.

Sci Rep. 2017 Jul 6;7(1):4831. doi: 10.1038/s41598-017-05263-7.


Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot.

Pérez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarín D, Matzke NJ, Silvestro D, Antonelli A.

New Phytol. 2017 Jul;215(2):891-905. doi: 10.1111/nph.14629.


Comment (1) on "Formation of the Isthmus of Panama" by O'Dea et al.

Jaramillo C, Montes C, Cardona A, Silvestro D, Antonelli A, Bacon CD.

Sci Adv. 2017 Jun 14;3(6):e1602321. doi: 10.1126/sciadv.1602321. eCollection 2017 Jun.


Interactions within and between clades shaped the diversification of terrestrial carnivores.

Pires MM, Silvestro D, Quental TB.

Evolution. 2017 Jul;71(7):1855-1864. doi: 10.1111/evo.13269. Epub 2017 Jun 8.


Educational action in the rehabilitation of severe acquired brain injuries: the role of self-awareness.

Silvestro D, Mazzetti M, Melia C, Stagno MT, Carlesimo GA, Bivona U, Formisano R.

Ann Ist Super Sanita. 2017 Jan-Mar;53(1):82-85. doi: 10.4415/ANN_17_01_15. Review.


Mammal body size evolution in North America and Europe over 20 Myr: similar trends generated by different processes.

Huang S, Eronen JT, Janis CM, Saarinen JJ, Silvestro D, Fritz SA.

Proc Biol Sci. 2017 Feb 22;284(1849). pii: 20162361. doi: 10.1098/rspb.2016.2361.


Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr. (Bromeliaceae).

Cruz GAS, Zizka G, Silvestro D, Leme EMC, Schulte K, Benko-Iseppon AM.

Mol Phylogenet Evol. 2017 Feb;107:152-165. doi: 10.1016/j.ympev.2016.10.019. Epub 2016 Oct 27.


Characterization of a dynamic metabolon producing the defense compound dhurrin in sorghum.

Laursen T, Borch J, Knudsen C, Bavishi K, Torta F, Martens HJ, Silvestro D, Hatzakis NS, Wenk MR, Dafforn TR, Olsen CE, Motawia MS, Hamberger B, Møller BL, Bassard JE.

Science. 2016 Nov 18;354(6314):890-893.


Quality of life in persons after traumatic brain injury as self-perceived and as perceived by the caregivers.

Formisano R, Longo E, Azicnuda E, Silvestro D, D'Ippolito M, Truelle JL, von Steinbüchel N, von Wild K, Wilson L, Rigon J, Barba C, Forcina A, Giustini M.

Neurol Sci. 2017 Feb;38(2):279-286. doi: 10.1007/s10072-016-2755-y. Epub 2016 Nov 8.


Quality of life after brain injury (QOLIBRI): Italian validation of the proxy version.

Formisano R, Silvestro D, Azicnuda E, Longo E, Barba C, Rigon J, D'Ippolito M, Giustini M, Bivona U.

Intern Emerg Med. 2017 Mar;12(2):187-198. doi: 10.1007/s11739-016-1536-1. Epub 2016 Sep 29.


Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa.

Antonelli A, Hettling H, Condamine FL, Vos K, Nilsson RH, Sanderson MJ, Sauquet H, Scharn R, Silvestro D, Töpel M, Bacon CD, Oxelman B, Vos RA.

Syst Biol. 2017 Mar 1;66(2):152-166. doi: 10.1093/sysbio/syw066.


Progress to extinction: increased specialisation causes the demise of animal clades.

Raia P, Carotenuto F, Mondanaro A, Castiglione S, Passaro F, Saggese F, Melchionna M, Serio C, Alessio L, Silvestro D, Fortelius M.

Sci Rep. 2016 Aug 10;6:30965. doi: 10.1038/srep30965.


SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and Evolution.

Töpel M, Zizka A, Calió MF, Scharn R, Silvestro D, Antonelli A.

Syst Biol. 2017 Mar 1;66(2):145-151. doi: 10.1093/sysbio/syw064.


Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data.

Silvestro D, Zizka A, Bacon CD, Cascales-Miñana B, Salamin N, Antonelli A.

Philos Trans R Soc Lond B Biol Sci. 2016 Apr 5;371(1691):20150225. doi: 10.1098/rstb.2015.0225.


Bridging Inter- and Intraspecific Trait Evolution with a Hierarchical Bayesian Approach.

Kostikova A, Silvestro D, Pearman PB, Salamin N.

Syst Biol. 2016 May;65(3):417-31. doi: 10.1093/sysbio/syw010. Epub 2016 Feb 23.


Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae.

Serrano-Serrano ML, Perret M, Guignard M, Chautems A, Silvestro D, Salamin N.

BMC Evol Biol. 2015 Nov 10;15:247. doi: 10.1186/s12862-015-0527-6.


Continental faunal exchange and the asymmetrical radiation of carnivores.

Pires MM, Silvestro D, Quental TB.

Proc Biol Sci. 2015 Oct 22;282(1817):20151952. doi: 10.1098/rspb.2015.1952.


Reply to Lessios and Marko et al.: Early and progressive migration across the Isthmus of Panama is robust to missing data and biases.

Bacon CD, Silvestro D, Jaramillo C, Smith BT, Chakrabarty P, Antonelli A.

Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5767-8. doi: 10.1073/pnas.1515451112. Epub 2015 Oct 21. No abstract available.


A recycling pathway for cyanogenic glycosides evidenced by the comparative metabolic profiling in three cyanogenic plant species.

Pičmanová M, Neilson EH, Motawia MS, Olsen CE, Agerbirk N, Gray CJ, Flitsch S, Meier S, Silvestro D, Jørgensen K, Sánchez-Pérez R, Møller BL, Bjarnholt N.

Biochem J. 2015 Aug 1;469(3):375-89. doi: 10.1042/BJ20150390. Epub 2015 Jun 11.


The role of clade competition in the diversification of North American canids.

Silvestro D, Antonelli A, Salamin N, Quental TB.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8684-9. doi: 10.1073/pnas.1502803112. Epub 2015 Jun 29.


Biological evidence supports an early and complex emergence of the Isthmus of Panama.

Bacon CD, Silvestro D, Jaramillo C, Smith BT, Chakrabarty P, Antonelli A.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):6110-5. doi: 10.1073/pnas.1423853112. Epub 2015 Apr 27. Erratum in: Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):E3153. Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):E3631.


An engine for global plant diversity: highest evolutionary turnover and emigration in the American tropics.

Antonelli A, Zizka A, Silvestro D, Scharn R, Cascales-Miñana B, Bacon CD.

Front Genet. 2015 Apr 8;6:130. doi: 10.3389/fgene.2015.00130. eCollection 2015.


Theory of mind impairment after severe traumatic brain injury and its relationship with caregivers' quality of life.

Bivona U, Formisano R, De Laurentiis S, Accetta N, Di Cosimo MR, Massicci R, Ciurli P, Azicnuda E, Silvestro D, Sabatini U, Falletta Caravasso C, Carlesimo GA, Caltagirone C, Costa A.

Restor Neurol Neurosci. 2015;33(3):335-45. doi: 10.3233/RNN-140484.


Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil record.

Silvestro D, Cascales-Miñana B, Bacon CD, Antonelli A.

New Phytol. 2015 Jul;207(2):425-436. doi: 10.1111/nph.13247. Epub 2015 Jan 26.


Health-related quality of life after traumatic brain injury: Italian validation of the QOLIBRI.

Giustini M, Longo E, Azicnuda E, Silvestro D, D'Ippolito M, Rigon J, Cedri C, Bivona U, Barba C, Formisano R.

Funct Neurol. 2014 Jul-Sep;29(3):167-76.


Serum albumin promotes ATP-binding cassette transporter-dependent sterol uptake in yeast.

Marek M, Silvestro D, Fredslund MD, Andersen TG, Pomorski TG.

FEMS Yeast Res. 2014 Dec;14(8):1223-33. doi: 10.1111/1567-1364.12219. Epub 2014 Nov 17.


Molecular phylogeny of the Brazilian endemic genus Orthophytum (Bromelioideae, Bromeliaceae) and its implications on morphological character evolution.

Louzada RB, Schulte K, Wanderley Md, Silvestro D, Zizka G, Barfuss MH, Palma-Silva C.

Mol Phylogenet Evol. 2014 Aug;77:54-64. doi: 10.1016/j.ympev.2014.03.007. Epub 2014 Mar 21.


Bayesian estimation of speciation and extinction from incomplete fossil occurrence data.

Silvestro D, Schnitzler J, Liow LH, Antonelli A, Salamin N.

Syst Biol. 2014 May;63(3):349-67. doi: 10.1093/sysbio/syu006. Epub 2014 Feb 8.

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