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Items: 8

1.

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures.

Wang Z, He E, Sani K, Jagodnik KM, Silverstein MC, Ma'ayan A.

Bioinformatics. 2019 Apr 1;35(7):1247-1248. doi: 10.1093/bioinformatics/bty763.

PMID:
30169739
2.

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

Clarke DJB, Kuleshov MV, Schilder BM, Torre D, Duffy ME, Keenan AB, Lachmann A, Feldmann AS, Gundersen GW, Silverstein MC, Wang Z, Ma'ayan A.

Nucleic Acids Res. 2018 Jul 2;46(W1):W171-W179. doi: 10.1093/nar/gky458.

3.

Massive mining of publicly available RNA-seq data from human and mouse.

Lachmann A, Torre D, Keenan AB, Jagodnik KM, Lee HJ, Wang L, Silverstein MC, Ma'ayan A.

Nat Commun. 2018 Apr 10;9(1):1366. doi: 10.1038/s41467-018-03751-6.

4.

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Keenan AB, Jenkins SL, Jagodnik KM, Koplev S, He E, Torre D, Wang Z, Dohlman AB, Silverstein MC, Lachmann A, Kuleshov MV, Ma'ayan A, Stathias V, Terryn R, Cooper D, Forlin M, Koleti A, Vidovic D, Chung C, Schürer SC, Vasiliauskas J, Pilarczyk M, Shamsaei B, Fazel M, Ren Y, Niu W, Clark NA, White S, Mahi N, Zhang L, Kouril M, Reichard JF, Sivaganesan S, Medvedovic M, Meller J, Koch RJ, Birtwistle MR, Iyengar R, Sobie EA, Azeloglu EU, Kaye J, Osterloh J, Haston K, Kalra J, Finkbiener S, Li J, Milani P, Adam M, Escalante-Chong R, Sachs K, Lenail A, Ramamoorthy D, Fraenkel E, Daigle G, Hussain U, Coye A, Rothstein J, Sareen D, Ornelas L, Banuelos M, Mandefro B, Ho R, Svendsen CN, Lim RG, Stocksdale J, Casale MS, Thompson TG, Wu J, Thompson LM, Dardov V, Venkatraman V, Matlock A, Van Eyk JE, Jaffe JD, Papanastasiou M, Subramanian A, Golub TR, Erickson SD, Fallahi-Sichani M, Hafner M, Gray NS, Lin JR, Mills CE, Muhlich JL, Niepel M, Shamu CE, Williams EH, Wrobel D, Sorger PK, Heiser LM, Gray JW, Korkola JE, Mills GB, LaBarge M, Feiler HS, Dane MA, Bucher E, Nederlof M, Sudar D, Gross S, Kilburn DF, Smith R, Devlin K, Margolis R, Derr L, Lee A, Pillai A.

Cell Syst. 2018 Jan 24;6(1):13-24. doi: 10.1016/j.cels.2017.11.001. Epub 2017 Nov 29. Review.

5.

Characterization of water in hydrated Bombyx mori silk fibroin fiber and films by 2H NMR relaxation and 13C solid state NMR.

Asakura T, Isobe K, Kametani S, Ukpebor OT, Silverstein MC, Boutis GS.

Acta Biomater. 2017 Mar 1;50:322-333. doi: 10.1016/j.actbio.2016.12.052. Epub 2017 Jan 5.

6.

Mechanical, structural, and dynamical modifications of cholesterol exposed porcine aortic elastin.

Bilici K, Morgan SW, Silverstein MC, Wang Y, Sun HJ, Zhang Y, Boutis GS.

Biophys Chem. 2016 Nov;218:47-57. doi: 10.1016/j.bpc.2016.09.002. Epub 2016 Sep 9.

7.

13C, 2h NMR studies of structural and dynamical modifications of glucose-exposed porcine aortic elastin.

Silverstein MC, Bilici K, Morgan SW, Wang Y, Zhang Y, Boutis GS.

Biophys J. 2015 Apr 7;108(7):1758-1772. doi: 10.1016/j.bpj.2015.02.005.

8.

The role of mode of delivery on elastic fiber architecture and vaginal vault elasticity: a rodent model study.

Downing KT, Billah M, Raparia E, Shah A, Silverstein MC, Ahmad A, Boutis GS.

J Mech Behav Biomed Mater. 2014 Jan;29:190-8. doi: 10.1016/j.jmbbm.2013.08.025. Epub 2013 Sep 8.

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