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Items: 20

1.

DMD genomic deletions characterize a subset of progressive/higher-grade meningiomas with poor outcome.

Juratli TA, McCabe D, Nayyar N, Williams EA, Silverman IM, Tummala SS, Fink AL, Baig A, Martinez-Lage M, Selig MK, Bihun IV, Shankar GM, Penson T, Lastrapes M, Daubner D, Meinhardt M, Hennig S, Kaplan AB, Fujio S, Kuter BM, Bertalan MS, Miller JJ, Batten JM, Ely HA, Christiansen J, Baretton GB, Stemmer-Rachamimov AO, Santagata S, Rivera MN, Barker FG 2nd, Schackert G, Wakimoto H, Iafrate AJ, Carter SL, Cahill DP, Brastianos PK.

Acta Neuropathol. 2018 Aug 19. doi: 10.1007/s00401-018-1899-7. [Epub ahead of print]

PMID:
30123936
2.

Poly(C)-Binding Protein Pcbp2 Enables Differentiation of Definitive Erythropoiesis by Directing Functional Splicing of the Runx1 Transcript.

Ghanem LR, Kromer A, Silverman IM, Ji X, Gazzara M, Nguyen N, Aguilar G, Martinelli M, Barash Y, Liebhaber SA.

Mol Cell Biol. 2018 Jul 30;38(16). pii: e00175-18. doi: 10.1128/MCB.00175-18. Print 2018 Aug 15.

PMID:
29866654
3.

Intratumoral heterogeneity and TERT promoter mutations in progressive/higher-grade meningiomas.

Juratli TA, Thiede C, Koerner MVA, Tummala SS, Daubner D, Shankar GM, Williams EA, Martinez-Lage M, Soucek S, Robel K, Penson T, Krause M, Appold S, Meinhardt M, Pinzer T, Miller JJ, Krex D, Ely HA, Silverman IM, Christiansen J, Schackert G, Wakimoto H, Kirsch M, Brastianos PK, Cahill DP.

Oncotarget. 2017 Nov 24;8(65):109228-109237. doi: 10.18632/oncotarget.22650. eCollection 2017 Dec 12.

4.

Loss of NAD Homeostasis Leads to Progressive and Reversible Degeneration of Skeletal Muscle.

Frederick DW, Loro E, Liu L, Davila A Jr, Chellappa K, Silverman IM, Quinn WJ 3rd, Gosai SJ, Tichy ED, Davis JG, Mourkioti F, Gregory BD, Dellinger RW, Redpath P, Migaud ME, Nakamaru-Ogiso E, Rabinowitz JD, Khurana TS, Baur JA.

Cell Metab. 2016 Aug 9;24(2):269-82. doi: 10.1016/j.cmet.2016.07.005.

5.

Terpene metabolic engineering via nuclear or chloroplast genomes profoundly and globally impacts off-target pathways through metabolite signalling.

Pasoreck EK, Su J, Silverman IM, Gosai SJ, Gregory BD, Yuan JS, Daniell H.

Plant Biotechnol J. 2016 Sep;14(9):1862-75. doi: 10.1111/pbi.12548. Epub 2016 Mar 8.

6.

Genome-Wide Approaches for RNA Structure Probing.

Silverman IM, Berkowitz ND, Gosai SJ, Gregory BD.

Adv Exp Med Biol. 2016;907:29-59. doi: 10.1007/978-3-319-29073-7_2.

PMID:
27256381
7.

A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer).

Berkowitz ND, Silverman IM, Childress DM, Kazan H, Wang LS, Gregory BD.

BMC Bioinformatics. 2016 May 17;17(1):215. doi: 10.1186/s12859-016-1071-0.

8.

Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis.

Vandivier LE, Campos R, Kuksa PP, Silverman IM, Wang LS, Gregory BD.

Plant Cell. 2015 Nov;27(11):3024-37. doi: 10.1105/tpc.15.00591. Epub 2015 Nov 11.

9.

Cytoplasmic poly(A) binding protein-1 binds to genomically encoded sequences within mammalian mRNAs.

Kini HK, Silverman IM, Ji X, Gregory BD, Liebhaber SA.

RNA. 2016 Jan;22(1):61-74. doi: 10.1261/rna.053447.115. Epub 2015 Nov 9.

10.

The Poly(C) Binding Protein Pcbp2 and Its Retrotransposed Derivative Pcbp1 Are Independently Essential to Mouse Development.

Ghanem LR, Kromer A, Silverman IM, Chatterji P, Traxler E, Penzo-Mendez A, Weiss MJ, Stanger BZ, Liebhaber SA.

Mol Cell Biol. 2015 Nov 2;36(2):304-19. doi: 10.1128/MCB.00936-15. Print 2016 Jan 15.

11.

Global analysis of the RNA-protein interaction and RNA secondary structure landscapes of the Arabidopsis nucleus.

Gosai SJ, Foley SW, Wang D, Silverman IM, Selamoglu N, Nelson AD, Beilstein MA, Daldal F, Deal RB, Gregory BD.

Mol Cell. 2015 Jan 22;57(2):376-88. doi: 10.1016/j.molcel.2014.12.004. Epub 2014 Dec 31.

12.

Transcriptome-wide ribonuclease-mediated protein footprinting to identify RNA-protein interaction sites.

Silverman IM, Gregory BD.

Methods. 2015 Jan 15;72:76-85. doi: 10.1016/j.ymeth.2014.10.021. Epub 2014 Oct 28.

PMID:
25448484
13.

Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases.

Liu Y, Ferguson JF, Xue C, Ballantyne RL, Silverman IM, Gosai SJ, Serfecz J, Morley MP, Gregory BD, Li M, Reilly MP.

Arterioscler Thromb Vasc Biol. 2014 Apr;34(4):902-12. doi: 10.1161/ATVBAHA.113.303123. Epub 2014 Feb 6.

14.

RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome.

Silverman IM, Li F, Alexander A, Goff L, Trapnell C, Rinn JL, Gregory BD.

Genome Biol. 2014 Jan 7;15(1):R3. doi: 10.1186/gb-2014-15-1-r3.

15.

HAMR: high-throughput annotation of modified ribonucleotides.

Ryvkin P, Leung YY, Silverman IM, Childress M, Valladares O, Dragomir I, Gregory BD, Wang LS.

RNA. 2013 Dec;19(12):1684-92. doi: 10.1261/rna.036806.112. Epub 2013 Oct 22.

16.

Evaluating the impact of sequencing depth on transcriptome profiling in human adipose.

Liu Y, Ferguson JF, Xue C, Silverman IM, Gregory B, Reilly MP, Li M.

PLoS One. 2013 Jun 24;8(6):e66883. doi: 10.1371/journal.pone.0066883. Print 2013.

17.

Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants.

Silverman IM, Li F, Gregory BD.

Plant Sci. 2013 May;205-206:55-62. doi: 10.1016/j.plantsci.2013.01.009. Epub 2013 Feb 1. Review.

18.

Myocardial infarction with angiographically normal coronary arteries.

Sharifi M, Frohlich TG, Silverman IM.

Chest. 1995 Jan;107(1):36-40.

PMID:
7813306
19.

Heparin-associated thrombocytopenia: alternative managements.

Vender JS, Matthew EB, Silverman IM, Konowitz H, Dau PC.

Anesth Analg. 1986 May;65(5):520-2. No abstract available.

PMID:
3485938
20.

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