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Items: 17

1.

Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software.

Kaiser M, Jug F, Julou T, Deshpande S, Pfohl T, Silander OK, Myers G, van Nimwegen E.

Nat Commun. 2018 Jan 15;9(1):212. doi: 10.1038/s41467-017-02505-0.

2.

Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih.

Butela KA, Gurney SMR, Hendrickson HL, LeBlanc-Straceski JM, Zimmerman AM, Conant SB, Freed NE, Silander OK, Thomson JJ, Berkes CA, Bertolez C, Davies CG, Elinsky A, Hanlon AJ, Nersesyan J, Patel P, Sherwood J, Tieu Ngo T, Wisniewski KA, Yacoo K, Arendse PM, Bowlen NW, Cunmulaj J, Downs JL, Ferrenberg CA, Gassman AE, Gilligan CER, Gorkiewicz E, Harness C, Huffman A, Jones C, Julien A, Kupic AE, Latu SF, Manning TJ, Maxwell D; Merrimack College SEA-PHAGES Annotators 2016, Meyer CE, Reardon M, Slaughter M, Swasey R, Tennent RI, Torres V, Waller T, Worcester RM, Yost BL, Cresawn SG, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF, Kagey JD.

Genome Announc. 2017 Oct 26;5(43). pii: e01182-17. doi: 10.1128/genomeA.01182-17.

3.
4.

Expression noise facilitates the evolution of gene regulation.

Wolf L, Silander OK, van Nimwegen E.

Elife. 2015 Jun 17;4. doi: 10.7554/eLife.05856.

5.

Automated reconstruction of whole-genome phylogenies from short-sequence reads.

Bertels F, Silander OK, Pachkov M, Rainey PB, van Nimwegen E.

Mol Biol Evol. 2014 May;31(5):1077-88. doi: 10.1093/molbev/msu088. Epub 2014 Mar 5.

6.

The predictability of molecular evolution during functional innovation.

Blank D, Wolf L, Ackermann M, Silander OK.

Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3044-9. doi: 10.1073/pnas.1318797111. Epub 2014 Feb 10.

7.

Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli.

Hofsteenge N, van Nimwegen E, Silander OK.

BMC Microbiol. 2013 Feb 4;13:25. doi: 10.1186/1471-2180-13-25.

8.

Opposite effects of KCTD subunit domains on GABA(B) receptor-mediated desensitization.

Seddik R, Jungblut SP, Silander OK, Rajalu M, Fritzius T, Besseyrias V, Jacquier V, Fakler B, Gassmann M, Bettler B.

J Biol Chem. 2012 Nov 16;287(47):39869-77. doi: 10.1074/jbc.M112.412767. Epub 2012 Oct 3.

9.

Patterns of evolutionary conservation of essential genes correlate with their compensability.

Bergmiller T, Ackermann M, Silander OK.

PLoS Genet. 2012 Jun;8(6):e1002803. doi: 10.1371/journal.pgen.1002803. Epub 2012 Jun 28.

10.

A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli.

Silander OK, Nikolic N, Zaslaver A, Bren A, Kikoin I, Alon U, Ackermann M.

PLoS Genet. 2012 Jan;8(1):e1002443. doi: 10.1371/journal.pgen.1002443. Epub 2012 Jan 19.

11.

Geographic differences in sexual reassortment in RNA phage.

O'Keefe KJ, Silander OK, McCreery H, Weinreich DM, Wright KM, Chao L, Edwards SV, Remold SK, Turner PE.

Evolution. 2010 Oct;64(10):3010-23. doi: 10.1111/j.1558-5646.2010.01040.x. Epub 2010 Aug 19.

PMID:
20500219
12.

The constancy of gene conservation across divergent bacterial orders.

Silander OK, Ackermann M.

BMC Res Notes. 2009 Jan 7;2:2. doi: 10.1186/1756-0500-2-2.

13.

A simple screen to identify promoters conferring high levels of phenotypic noise.

Freed NE, Silander OK, Stecher B, Böhm A, Hardt WD, Ackermann M.

PLoS Genet. 2008 Dec;4(12):e1000307. doi: 10.1371/journal.pgen.1000307. Epub 2008 Dec 19.

14.
15.

Epistasis between deleterious mutations and the evolution of recombination.

Kouyos RD, Silander OK, Bonhoeffer S.

Trends Ecol Evol. 2007 Jun;22(6):308-15. Epub 2007 Mar 6. Review.

PMID:
17337087
16.

Quantifying organismal complexity using a population genetic approach.

Tenaillon O, Silander OK, Uzan JP, Chao L.

PLoS One. 2007 Feb 14;2(2):e217.

17.

Widespread genetic exchange among terrestrial bacteriophages.

Silander OK, Weinreich DM, Wright KM, O'Keefe KJ, Rang CU, Turner PE, Chao L.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19009-14. Epub 2005 Dec 19.

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