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Items: 1 to 50 of 77

1.

Influence of Nanopillar Arrays on Fibroblast Motility, Adhesion, and Migration Mechanisms.

Beckwith KS, Ullmann S, Vinje J, Sikorski P.

Small. 2019 Aug 29:e1902514. doi: 10.1002/smll.201902514. [Epub ahead of print]

PMID:
31464377
2.

Bio-instructive materials for musculoskeletal regeneration.

Gonzalez-Fernandez T, Sikorski P, Leach JK.

Acta Biomater. 2019 Sep 15;96:20-34. doi: 10.1016/j.actbio.2019.07.014. Epub 2019 Jul 11. Review.

PMID:
31302298
3.

Towards a low CO2 emission building material employing bacterial metabolism (1/2): The bacterial system and prototype production.

Røyne A, Phua YJ, Balzer Le S, Eikjeland IG, Josefsen KD, Markussen S, Myhr A, Throne-Holst H, Sikorski P, Wentzel A.

PLoS One. 2019 Apr 16;14(4):e0212990. doi: 10.1371/journal.pone.0212990. eCollection 2019.

4.

Thus far but no further: predatory mites do not migrate effectively into strawberry plantations.

Sikorska D, Garnis J, Dąbrowski ZT, Sikorski P, Gozdowski D, Hopkins RJ.

Exp Appl Acarol. 2019 Mar;77(3):359-373. doi: 10.1007/s10493-019-00357-5. Epub 2019 Mar 27.

PMID:
30919170
5.

Stabilisation of amorphous calcium phosphate in polyethylene glycol hydrogels.

Schweikle M, Bjørnøy SH, van Helvoort ATJ, Haugen HJ, Sikorski P, Tiainen H.

Acta Biomater. 2019 May;90:132-145. doi: 10.1016/j.actbio.2019.03.044. Epub 2019 Mar 21.

PMID:
30905863
6.

Local Structure of Ca2+ Alginate Hydrogels Gelled via Competitive Ligand Exchange and Measured by Small Angle X-Ray Scattering.

Yamamoto K, Yuguchi Y, Stokke BT, Sikorski P, Bassett DC.

Gels. 2019 Jan 9;5(1). pii: E3. doi: 10.3390/gels5010003.

7.

Nicotinamide-Containing Di- and Trinucleotides as Chemical Tools for Studies of NAD-Capped RNAs.

Mlynarska-Cieslak A, Depaix A, Grudzien-Nogalska E, Sikorski PJ, Warminski M, Kiledjian M, Jemielity J, Kowalska J.

Org Lett. 2018 Dec 7;20(23):7650-7655. doi: 10.1021/acs.orglett.8b03386. Epub 2018 Nov 27.

PMID:
30479128
8.

mRNAs biotinylated within the 5' cap and protected against decapping: new tools to capture RNA-protein complexes.

Bednarek S, Madan V, Sikorski PJ, Bartenschlager R, Kowalska J, Jemielity J.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 5;373(1762). pii: 20180167. doi: 10.1098/rstb.2018.0167.

PMID:
30397103
9.

Exploring the potential of phosphotriazole 5' mRNA cap analogues as efficient translation initiators.

Walczak S, Sikorski PJ, Kasprzyk R, Kowalska J, Jemielity J.

Org Biomol Chem. 2018 Sep 19;16(36):6741-6748. doi: 10.1039/c8ob01720d.

PMID:
30187040
10.

ExciTides: NTP-derived probes for monitoring pyrophosphatase activity based on excimer-to-monomer transitions.

Wanat P, Kasprzyk R, Kopcial M, Sikorski PJ, Strzelecka D, Jemielity J, Kowalska J.

Chem Commun (Camb). 2018 Aug 28;54(70):9773-9776. doi: 10.1039/c8cc04968h.

PMID:
30105342
11.

5'-Phosphorothiolate Dinucleotide Cap Analogues: Reagents for Messenger RNA Modification and Potent Small-Molecular Inhibitors of Decapping Enzymes.

Wojtczak BA, Sikorski PJ, Fac-Dabrowska K, Nowicka A, Warminski M, Kubacka D, Nowak E, Nowotny M, Kowalska J, Jemielity J.

J Am Chem Soc. 2018 May 9;140(18):5987-5999. doi: 10.1021/jacs.8b02597. Epub 2018 May 1.

PMID:
29676910
12.

Azido-Functionalized 5' Cap Analogues for the Preparation of Translationally Active mRNAs Suitable for Fluorescent Labeling in Living Cells.

Mamot A, Sikorski PJ, Warminski M, Kowalska J, Jemielity J.

Angew Chem Int Ed Engl. 2017 Dec 4;56(49):15628-15632. doi: 10.1002/anie.201709052. Epub 2017 Nov 7.

PMID:
29048718
13.

mRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation.

Rydzik AM, Warminski M, Sikorski PJ, Baranowski MR, Walczak S, Kowalska J, Zuberek J, Lukaszewicz M, Nowak E, W Claridge TD, Darzynkiewicz E, Nowotny M, Jemielity J.

Nucleic Acids Res. 2017 Sep 6;45(15):8661-8675. doi: 10.1093/nar/gkx569.

14.

Amino-Functionalized 5' Cap Analogs as Tools for Site-Specific Sequence-Independent Labeling of mRNA.

Warminski M, Sikorski PJ, Warminska Z, Lukaszewicz M, Kropiwnicka A, Zuberek J, Darzynkiewicz E, Kowalska J, Jemielity J.

Bioconjug Chem. 2017 Jul 19;28(7):1978-1992. doi: 10.1021/acs.bioconjchem.7b00291. Epub 2017 Jun 27.

PMID:
28613834
15.

Comparison of preribosomal RNA processing pathways in yeast, plant and human cells - focus on coordinated action of endo- and exoribonucleases.

Tomecki R, Sikorski PJ, Zakrzewska-Placzek M.

FEBS Lett. 2017 Jul;591(13):1801-1850. doi: 10.1002/1873-3468.12682. Epub 2017 Jun 4. Review.

16.

Characterization of Early-Phase Neutrophil Extracellular Traps in Urinary Tract Infections.

Yu Y, Kwon K, Tsitrin T, Bekele S, Sikorski P, Nelson KE, Pieper R.

PLoS Pathog. 2017 Jan 27;13(1):e1006151. doi: 10.1371/journal.ppat.1006151. eCollection 2017 Jan.

17.

Applications of Phosphate Modification and Labeling to Study (m)RNA Caps.

Warminski M, Sikorski PJ, Kowalska J, Jemielity J.

Top Curr Chem (Cham). 2017 Feb;375(1):16. doi: 10.1007/s41061-017-0106-y. Epub 2017 Jan 23. Review.

18.

Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract.

Yu Y, Sikorski P, Smith M, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R.

Theranostics. 2017 Jan 1;7(2):238-252. doi: 10.7150/thno.16086. eCollection 2017.

19.

Letter to the Editor re "Characterization of alginate-brushite in-situ hydrogel composites".

Bjørnøy SH, Bassett DC, Ucar S, Andreassen JP, Sikorski P.

Mater Sci Eng C Mater Biol Appl. 2017 Jan 1;70(Pt 1):930-931. doi: 10.1016/j.msec.2016.08.074. Epub 2016 Aug 31. No abstract available.

PMID:
27770970
20.

Unusual presentation of squamous cell carcinoma of the maxilla in an 8-year-old child.

Magalhaes MA, Somers GR, Sikorski P, Forte V, Abouzgia M, Barrett E, Bradley G.

Oral Surg Oral Med Oral Pathol Oral Radiol. 2016 Nov;122(5):e179-e185. doi: 10.1016/j.oooo.2016.06.017. Epub 2016 Jul 14.

PMID:
27765341
21.

A correlative spatiotemporal microscale study of calcium phosphate formation and transformation within an alginate hydrogel matrix.

Bjørnøy SH, Bassett DC, Ucar S, Strand BL, Andreassen JP, Sikorski P.

Acta Biomater. 2016 Oct 15;44:254-66. doi: 10.1016/j.actbio.2016.08.041. Epub 2016 Aug 24.

PMID:
27567962
22.

Versatile, cell and chip friendly method to gel alginate in microfluidic devices.

Håti AG, Bassett DC, Ribe JM, Sikorski P, Weitz DA, Stokke BT.

Lab Chip. 2016 Oct 7;16(19):3718-27. doi: 10.1039/c6lc00769d. Epub 2016 Aug 22.

PMID:
27546333
23.

Gelling kinetics and in situ mineralization of alginate hydrogels: A correlative spatiotemporal characterization toolbox.

Bjørnøy SH, Mandaric S, Bassett DC, Slund AK, Ucar S, Andreassen JP, Strand BL, Sikorski P.

Acta Biomater. 2016 Oct 15;44:243-53. doi: 10.1016/j.actbio.2016.07.046. Epub 2016 Aug 3.

PMID:
27497844
24.

Controlled mineralisation and recrystallisation of brushite within alginate hydrogels.

Bjørnøy SH, Bassett DC, Ucar S, Andreassen JP, Sikorski P.

Biomed Mater. 2016 Feb 2;11(1):015013. doi: 10.1088/1748-6041/11/1/015013.

PMID:
26836293
25.

Seeing a Mycobacterium-Infected Cell in Nanoscale 3D: Correlative Imaging by Light Microscopy and FIB/SEM Tomography.

Beckwith MS, Beckwith KS, Sikorski P, Skogaker NT, Flo TH, Halaas Ø.

PLoS One. 2015 Sep 25;10(9):e0134644. doi: 10.1371/journal.pone.0134644. eCollection 2015.

26.

Distinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana.

Sikorski PJ, Zuber H, Philippe L, Sement FM, Canaday J, Kufel J, Gagliardi D, Lange H.

Plant J. 2015 Sep;83(6):991-1004. doi: 10.1111/tpj.12943.

27.

Tunable high aspect ratio polymer nanostructures for cell interfaces.

Beckwith KS, Cooil SP, Wells JW, Sikorski P.

Nanoscale. 2015 May 14;7(18):8438-50. doi: 10.1039/c5nr00674k.

PMID:
25891641
28.

Diagnosing inflammation and infection in the urinary system via proteomics.

Yu Y, Sikorski P, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R.

J Transl Med. 2015 Apr 8;13:111. doi: 10.1186/s12967-015-0475-3.

29.

Osteogenic differentiation of human mesenchymal stem cells in mineralized alginate matrices.

Westhrin M, Xie M, Olderøy MØ, Sikorski P, Strand BL, Standal T.

PLoS One. 2015 Mar 13;10(3):e0120374. doi: 10.1371/journal.pone.0120374. eCollection 2015.

30.

Dissolution of copper mineral phases in biological fluids and the controlled release of copper ions from mineralized alginate hydrogels.

Bassett DC, Madzovska I, Beckwith KS, Melø TB, Obradovic B, Sikorski P.

Biomed Mater. 2014 Dec 29;10(1):015006. doi: 10.1088/1748-6041/10/1/015006.

PMID:
25546880
31.

Differential effect of bortezomib on HLA class I and class II antibody.

Philogene MC, Sikorski P, Montgomery RA, Leffell MS, Zachary AA.

Transplantation. 2014 Sep 27;98(6):660-5. doi: 10.1097/TP.0000000000000132.

PMID:
24798311
32.

Urine sample preparation in 96-well filter plates for quantitative clinical proteomics.

Yu Y, Suh MJ, Sikorski P, Kwon K, Nelson KE, Pieper R.

Anal Chem. 2014 Jun 3;86(11):5470-7. doi: 10.1021/ac5008317. Epub 2014 May 14.

33.

A second-generation protein-protein interaction network of Helicobacter pylori.

Häuser R, Ceol A, Rajagopala SV, Mosca R, Siszler G, Wermke N, Sikorski P, Schwarz F, Schick M, Wuchty S, Aloy P, Uetz P.

Mol Cell Proteomics. 2014 May;13(5):1318-29. doi: 10.1074/mcp.O113.033571. Epub 2014 Mar 13.

34.

Biochemical and structural characterization of neocartilage formed by mesenchymal stem cells in alginate hydrogels.

Olderøy MØ, Lilledahl MB, Beckwith MS, Melvik JE, Reinholt F, Sikorski P, Brinchmann JE.

PLoS One. 2014 Mar 13;9(3):e91662. doi: 10.1371/journal.pone.0091662. eCollection 2014. Erratum in: PLoS One. 2014;9(6):e101096.

35.

The binary protein-protein interaction landscape of Escherichia coli.

Rajagopala SV, Sikorski P, Kumar A, Mosca R, Vlasblom J, Arnold R, Franca-Koh J, Pakala SB, Phanse S, Ceol A, Häuser R, Siszler G, Wuchty S, Emili A, Babu M, Aloy P, Pieper R, Uetz P.

Nat Biotechnol. 2014 Mar;32(3):285-290. doi: 10.1038/nbt.2831. Epub 2014 Feb 23.

36.

The Rbf1, Hfl1 and Dbp4 of Candida albicans regulate common as well as transcription factor-specific mitochondrial and other cell activities.

Khamooshi K, Sikorski P, Sun N, Calderone R, Li D.

BMC Genomics. 2014 Jan 22;15:56. doi: 10.1186/1471-2164-15-56.

37.

Patterned cell arrays and patterned co-cultures on polydopamine-modified poly(vinyl alcohol) hydrogels.

Beckwith KM, Sikorski P.

Biofabrication. 2013 Dec;5(4):045009. doi: 10.1088/1758-5082/5/4/045009. Epub 2013 Nov 26.

PMID:
24280598
38.

Phosphorylation of the N- and C-terminal UPF1 domains plays a critical role in plant nonsense-mediated mRNA decay.

Kerényi F, Wawer I, Sikorski PJ, Kufel J, Silhavy D.

Plant J. 2013 Dec;76(5):836-48. doi: 10.1111/tpj.12346. Epub 2013 Nov 5.

39.

Arabidopsis thaliana LSM proteins function in mRNA splicing and degradation.

Golisz A, Sikorski PJ, Kruszka K, Kufel J.

Nucleic Acids Res. 2013 Jul;41(12):6232-49. doi: 10.1093/nar/gkt296. Epub 2013 Apr 24.

40.

The structure of cross-β tapes and tubes formed by an octapeptide, αSβ1.

Morris KL, Zibaee S, Chen L, Goedert M, Sikorski P, Serpell LC.

Angew Chem Int Ed Engl. 2013 Feb 18;52(8):2279-83. doi: 10.1002/anie.201207699. Epub 2013 Jan 10. No abstract available.

41.

Effects of visitor pressure on understory vegetation in Warsaw forested parks (Poland).

Sikorski P, Szumacher I, Sikorska D, Kozak M, Wierzba M.

Environ Monit Assess. 2013 Jul;185(7):5823-36. doi: 10.1007/s10661-012-2987-0. Epub 2012 Nov 11.

42.

A transparent nanowire-based cell impalement device suitable for detailed cell-nanowire interaction studies.

Mumm F, Beckwith KM, Bonde S, Martinez KL, Sikorski P.

Small. 2013 Jan 28;9(2):263-72. doi: 10.1002/smll.201201314. Epub 2012 Oct 4.

PMID:
23034997
43.

Studying protein complexes by the yeast two-hybrid system.

Rajagopala SV, Sikorski P, Caufield JH, Tovchigrechko A, Uetz P.

Methods. 2012 Dec;58(4):392-9. doi: 10.1016/j.ymeth.2012.07.015. Epub 2012 Jul 24.

44.

Viscoelastic properties of mineralized alginate hydrogel beads.

Olderøy MO, Xie M, Andreassen JP, Strand BL, Zhang Z, Sikorski P.

J Mater Sci Mater Med. 2012 Jul;23(7):1619-27. doi: 10.1007/s10856-012-4655-x. Epub 2012 May 3.

PMID:
22552827
45.

Enzymatic dysfunction of mitochondrial complex I of the Candida albicans goa1 mutant is associated with increased reactive oxidants and cell death.

Li D, Chen H, Florentino A, Alex D, Sikorski P, Fonzi WA, Calderone R.

Eukaryot Cell. 2011 May;10(5):672-82. doi: 10.1128/EC.00303-10. Epub 2011 Mar 11.

46.

Oxidative fabrication of patterned, large, non-flaking CuO nanowire arrays.

Mumm F, Sikorski P.

Nanotechnology. 2011 Mar 11;22(10):105605. doi: 10.1088/0957-4484/22/10/105605. Epub 2011 Feb 2.

PMID:
21289394
47.

Characterization of an antibody specific for HLA-A36 and not reactive with HLA-A1.

Sikorski P, Kopchaliiska D, Lucas DP, Leffell MS, Zachary AA.

Hum Immunol. 2011 Jan;72(1):87-90. doi: 10.1016/j.humimm.2010.10.008. Epub 2010 Oct 21.

PMID:
20971147
48.

A bio-originated porous template for the fabrication of very long, inorganic nanotubes and nanowires.

Mumm F, Kemell M, Leskelä M, Sikorski P.

Bioinspir Biomim. 2010 Jun;5(2):026005. doi: 10.1088/1748-3182/5/2/026005. Epub 2010 May 24.

PMID:
20498518
49.

Alginate-controlled formation of nanoscale calcium carbonate and hydroxyapatite mineral phase within hydrogel networks.

Xie M, Olderøy MØ, Andreassen JP, Selbach SM, Strand BL, Sikorski P.

Acta Biomater. 2010 Sep;6(9):3665-75. doi: 10.1016/j.actbio.2010.03.034. Epub 2010 Mar 30.

PMID:
20359556
50.

The common architecture of cross-beta amyloid.

Jahn TR, Makin OS, Morris KL, Marshall KE, Tian P, Sikorski P, Serpell LC.

J Mol Biol. 2010 Jan 29;395(4):717-27. doi: 10.1016/j.jmb.2009.09.039. Epub 2009 Sep 23.

PMID:
19781557

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