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Items: 24

1.

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.

Bertrand D, Shaw J, Kalathiyappan M, Ng AHQ, Kumar MS, Li C, Dvornicic M, Soldo JP, Koh JY, Tong C, Ng OT, Barkham T, Young B, Marimuthu K, Chng KR, Sikic M, Nagarajan N.

Nat Biotechnol. 2019 Aug;37(8):937-944. doi: 10.1038/s41587-019-0191-2. Epub 2019 Jul 29.

PMID:
31359005
2.

Prevalence of diabetic retinopathy in the Dubrovnik-Neretva County.

Gverović Antunica A, Bućan K, Kaštelan S, Kaštelan H, Ivanković M, Šikić M.

Cent Eur J Public Health. 2019 Jun;27(2):160-164. doi: 10.21101/cejph.a5213.

PMID:
31241293
3.

Evaluation of tools for long read RNA-seq splice-aware alignment.

Križanovic K, Echchiki A, Roux J, Šikic M.

Bioinformatics. 2018 Mar 1;34(5):748-754. doi: 10.1093/bioinformatics/btx668.

4.

Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance.

Šošic M, Šikic M.

Bioinformatics. 2017 May 1;33(9):1394-1395. doi: 10.1093/bioinformatics/btw753.

5.

Fast and accurate de novo genome assembly from long uncorrected reads.

Vaser R, Sović I, Nagarajan N, Šikić M.

Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.

6.

SWORD-a highly efficient protein database search.

Vaser R, Pavlović D, Šikić M.

Bioinformatics. 2016 Sep 1;32(17):i680-i684. doi: 10.1093/bioinformatics/btw445.

PMID:
27587689
7.

Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads.

Sović I, Križanović K, Skala K, Šikić M.

Bioinformatics. 2016 Sep 1;32(17):2582-9. doi: 10.1093/bioinformatics/btw237. Epub 2016 May 9.

PMID:
27162186
8.

Fast and sensitive mapping of nanopore sequencing reads with GraphMap.

Sović I, Šikić M, Wilm A, Fenlon SN, Chen S, Nagarajan N.

Nat Commun. 2016 Apr 15;7:11307. doi: 10.1038/ncomms11307.

9.

SW#db: GPU-Accelerated Exact Sequence Similarity Database Search.

Korpar M, Šošić M, Blažeka D, Šikić M.

PLoS One. 2015 Dec 31;10(12):e0145857. doi: 10.1371/journal.pone.0145857. eCollection 2015.

10.

SIFT missense predictions for genomes.

Vaser R, Adusumalli S, Leng SN, Sikic M, Ng PC.

Nat Protoc. 2016 Jan;11(1):1-9. doi: 10.1038/nprot.2015.123. Epub 2015 Dec 3.

PMID:
26633127
11.

Identification of Patient Zero in Static and Temporal Networks: Robustness and Limitations.

Antulov-Fantulin N, Lančić A, Šmuc T, Štefančić H, Šikić M.

Phys Rev Lett. 2015 Jun 19;114(24):248701. Epub 2015 Jun 16.

PMID:
26197016
12.

ExoLocator--an online view into genetic makeup of vertebrate proteins.

Khoo AA, Ogrizek-Tomas M, Bulovic A, Korpar M, Gürler E, Slijepcevic I, Šikic M, Mihalek I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D879-81. doi: 10.1093/nar/gkt1164. Epub 2013 Nov 23.

13.

SW#-GPU-enabled exact alignments on genome scale.

Korpar M, Šikic M.

Bioinformatics. 2013 Oct 1;29(19):2494-5. doi: 10.1093/bioinformatics/btt410. Epub 2013 Jul 17.

14.

Large-scale functional organization of long-range chromatin interaction networks.

Sandhu KS, Li G, Poh HM, Quek YL, Sia YY, Peh SQ, Mulawadi FH, Lim J, Sikic M, Menghi F, Thalamuthu A, Sung WK, Ruan X, Fullwood MJ, Liu E, Csermely P, Ruan Y.

Cell Rep. 2012 Nov 29;2(5):1207-19. doi: 10.1016/j.celrep.2012.09.022. Epub 2012 Oct 25.

15.

BioMe: biologically relevant metals.

Tus A, Rakipovic A, Peretin G, Tomic S, Sikic M.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W352-7. doi: 10.1093/nar/gks514. Epub 2012 Jun 12.

16.

Prediction of interacting protein residues using sequence and structure data.

Franke V, Sikić M, Vlahoviček K.

Methods Mol Biol. 2012;819:233-51. doi: 10.1007/978-1-61779-465-0_16.

PMID:
22183541
17.

Pick to place trajectories in human arm training environment.

Ziherl J, Podobnik J, Sikic M, Munih M.

Technol Health Care. 2009;17(4):323-35. doi: 10.3233/THC-2009-0543.

PMID:
19822948
18.

Bicycling injuries and mortality in Victoria, 2001-2006.

Sikic M, Mikocka-Walus AA, Gabbe BJ, McDermott FT, Cameron PA.

Med J Aust. 2009 Apr 6;190(7):353-6.

PMID:
19351307
19.

Prediction of protein-protein interaction sites in sequences and 3D structures by random forests.

Sikić M, Tomić S, Vlahovicek K.

PLoS Comput Biol. 2009 Jan;5(1):e1000278. doi: 10.1371/journal.pcbi.1000278. Epub 2009 Jan 30.

20.

PSAIA - protein structure and interaction analyzer.

Mihel J, Sikić M, Tomić S, Jeren B, Vlahovicek K.

BMC Struct Biol. 2008 Apr 9;8:21. doi: 10.1186/1472-6807-8-21.

21.

Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination.

Dokmanić I, Sikić M, Tomić S.

Acta Crystallogr D Biol Crystallogr. 2008 Mar;64(Pt 3):257-63. doi: 10.1107/S090744490706595X. Epub 2008 Feb 20.

PMID:
18323620
22.

Environmental stress factors affecting survival and virulence of Campylobacter jejuni.

Mihaljevic RR, Sikic M, Klancnik A, Brumini G, Mozina SS, Abram M.

Microb Pathog. 2007 Aug-Sep;43(2-3):120-5. Epub 2007 Apr 19.

PMID:
17512161
23.

A hundred and fifty years of the general hospital in Nova Gradiska (1846-1996).

Sikić M.

Acta Med Croatica. 1997;51(2):113-5. No abstract available.

PMID:
9204598
24.

[Chief Physician Jakov Dedoević-Jasa ((1910-1976))].

Sikić M.

Lijec Vjesn. 1977 May;99(5):333. Croatian. No abstract available.

PMID:
329031

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