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Items: 12

1.

Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.

Nicholls TJ, Spåhr H, Jiang S, Siira SJ, Koolmeister C, Sharma S, Kauppila JHK, Jiang M, Kaever V, Rackham O, Chabes A, Falkenberg M, Filipovska A, Larsson NG, Gustafsson CM.

Mol Cell. 2019 Sep 27. pii: S1097-2765(19)30695-1. doi: 10.1016/j.molcel.2019.09.010. [Epub ahead of print]

2.

CirGO: an alternative circular way of visualising gene ontology terms.

Kuznetsova I, Lugmayr A, Siira SJ, Rackham O, Filipovska A.

BMC Bioinformatics. 2019 Feb 18;20(1):84. doi: 10.1186/s12859-019-2671-2.

3.

Concerted regulation of mitochondrial and nuclear non-coding RNAs by a dual-targeted RNase Z.

Siira SJ, Rossetti G, Richman TR, Perks K, Ermer JA, Kuznetsova I, Hughes L, Shearwood AJ, Viola HM, Hool LC, Rackham O, Filipovska A.

EMBO Rep. 2018 Oct;19(10). pii: e46198. doi: 10.15252/embr.201846198. Epub 2018 Aug 20.

4.

Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins.

Spåhr H, Chia T, Lingford JP, Siira SJ, Cohen SB, Filipovska A, Rackham O.

Nat Commun. 2018 Jun 7;9(1):2212. doi: 10.1038/s41467-018-04388-1.

5.

PTCD1 Is Required for 16S rRNA Maturation Complex Stability and Mitochondrial Ribosome Assembly.

Perks KL, Rossetti G, Kuznetsova I, Hughes LA, Ermer JA, Ferreira N, Busch JD, Rudler DL, Spahr H, Schöndorf T, Shearwood AJ, Viola HM, Siira SJ, Hool LC, Milenkovic D, Larsson NG, Rackham O, Filipovska A.

Cell Rep. 2018 Apr 3;23(1):127-142. doi: 10.1016/j.celrep.2018.03.033.

6.

LRPPRC-mediated folding of the mitochondrial transcriptome.

Siira SJ, Spåhr H, Shearwood AJ, Ruzzenente B, Larsson NG, Rackham O, Filipovska A.

Nat Commun. 2017 Nov 16;8(1):1532. doi: 10.1038/s41467-017-01221-z.

7.

Simultaneous processing and degradation of mitochondrial RNAs revealed by circularized RNA sequencing.

Kuznetsova I, Siira SJ, Shearwood AJ, Ermer JA, Filipovska A, Rackham O.

Nucleic Acids Res. 2017 May 19;45(9):5487-5500. doi: 10.1093/nar/gkx104.

8.

Defects in RNA metabolism in mitochondrial disease.

Siira SJ, Shearwood AJ, Bracken CP, Rackham O, Filipovska A.

Int J Biochem Cell Biol. 2017 Apr;85:106-113. doi: 10.1016/j.biocel.2017.02.003. Epub 2017 Feb 9.

9.

POLRMT regulates the switch between replication primer formation and gene expression of mammalian mtDNA.

Kühl I, Miranda M, Posse V, Milenkovic D, Mourier A, Siira SJ, Bonekamp NA, Neumann U, Filipovska A, Polosa PL, Gustafsson CM, Larsson NG.

Sci Adv. 2016 Aug 5;2(8):e1600963. doi: 10.1126/sciadv.1600963. eCollection 2016 Aug.

10.

Transcriptome-wide effects of a POLR3A gene mutation in patients with an unusual phenotype of striatal involvement.

Azmanov DN, Siira SJ, Chamova T, Kaprelyan A, Guergueltcheva V, Shearwood AJ, Liu G, Morar B, Rackham O, Bynevelt M, Grudkova M, Kamenov Z, Svechtarov V, Tournev I, Kalaydjieva L, Filipovska A.

Hum Mol Genet. 2016 Oct 1;25(19):4302-4314. doi: 10.1093/hmg/ddw263. Epub 2016 Aug 9.

PMID:
27506977
11.

Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly.

Rackham O, Busch JD, Matic S, Siira SJ, Kuznetsova I, Atanassov I, Ermer JA, Shearwood AM, Richman TR, Stewart JB, Mourier A, Milenkovic D, Larsson NG, Filipovska A.

Cell Rep. 2016 Aug 16;16(7):1874-90. doi: 10.1016/j.celrep.2016.07.031. Epub 2016 Aug 4.

12.

Mapping of mitochondrial RNA-protein interactions by digital RNase footprinting.

Liu G, Mercer TR, Shearwood AM, Siira SJ, Hibbs ME, Mattick JS, Rackham O, Filipovska A.

Cell Rep. 2013 Nov 14;5(3):839-48. doi: 10.1016/j.celrep.2013.09.036. Epub 2013 Oct 31.

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