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Items: 44

1.

Single Cell Genomics-Based Analysis of Gene Content and Expression of Prophages in a Diffuse-Flow Deep-Sea Hydrothermal System.

Labonté JM, Pachiadaki M, Fergusson E, McNichol J, Grosche A, Gulmann LK, Vetriani C, Sievert SM, Stepanauskas R.

Front Microbiol. 2019 Jun 12;10:1262. doi: 10.3389/fmicb.2019.01262. eCollection 2019.

2.

Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities.

Thomas F, Morris JT, Wigand C, Sievert SM.

PLoS One. 2019 Apr 29;14(4):e0215767. doi: 10.1371/journal.pone.0215767. eCollection 2019.

3.

Editorial: The Responses of Marine Microorganisms, Communities and Ecofunctions to Environmental Gradients.

Dang H, Klotz MG, Lovell CR, Sievert SM.

Front Microbiol. 2019 Feb 8;10:115. doi: 10.3389/fmicb.2019.00115. eCollection 2019. No abstract available.

4.

Transcriptomic and proteomic insight into the mechanism of cyclooctasulfur- versus thiosulfate-oxidation by the chemolithoautotroph Sulfurimonas denitrificans.

Götz F, Pjevac P, Markert S, McNichol J, Becher D, Schweder T, Mussmann M, Sievert SM.

Environ Microbiol. 2019 Jan;21(1):244-258. doi: 10.1111/1462-2920.14452. Epub 2018 Nov 26.

PMID:
30362214
5.

Primary productivity below the seafloor at deep-sea hot springs.

McNichol J, Stryhanyuk H, Sylva SP, Thomas F, Musat N, Seewald JS, Sievert SM.

Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6756-6761. doi: 10.1073/pnas.1804351115. Epub 2018 Jun 11.

6.

Erratum: Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

Waite DW, Vanwonterghem I, Rinke C, Parks DH, Zhang Y, Takai K, Sievert SM, Simon J, Campbell BJ, Hanson TE, Woyke T, Klotz MG, Hugenholtz P.

Front Microbiol. 2018 Apr 18;9:772. doi: 10.3389/fmicb.2018.00772. eCollection 2018.

7.

Targeted metabolomics reveals proline as a major osmolyte in the chemolithoautotroph Sulfurimonas denitrificans.

Götz F, Longnecker K, Kido Soule MC, Becker KW, McNichol J, Kujawinski EB, Sievert SM.

Microbiologyopen. 2018 Aug;7(4):e00586. doi: 10.1002/mbo3.586. Epub 2018 Feb 9.

8.

Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont.

Ponnudurai R, Sayavedra L, Kleiner M, Heiden SE, Thürmer A, Felbeck H, Schlüter R, Sievert SM, Daniel R, Schweder T, Markert S.

Stand Genomic Sci. 2017 Sep 2;12:50. doi: 10.1186/s40793-017-0266-y. eCollection 2017.

9.

Relative Importance of Chemoautotrophy for Primary Production in a Light Exposed Marine Shallow Hydrothermal System.

Gomez-Saez GV, Pop Ristova P, Sievert SM, Elvert M, Hinrichs KU, Bühring SI.

Front Microbiol. 2017 Apr 21;8:702. doi: 10.3389/fmicb.2017.00702. eCollection 2017.

10.

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

Waite DW, Vanwonterghem I, Rinke C, Parks DH, Zhang Y, Takai K, Sievert SM, Simon J, Campbell BJ, Hanson TE, Woyke T, Klotz MG, Hugenholtz P.

Front Microbiol. 2017 Apr 24;8:682. doi: 10.3389/fmicb.2017.00682. eCollection 2017. Erratum in: Front Microbiol. 2018 Apr 18;9:772.

11.

Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans.

Giovannelli D, Sievert SM, Hügler M, Markert S, Becher D, Schweder T, Vetriani C.

Elife. 2017 Apr 24;6. pii: e18990. doi: 10.7554/eLife.18990.

12.

Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents.

Mino S, Nakagawa S, Makita H, Toki T, Miyazaki J, Sievert SM, Polz MF, Inagaki F, Godfroy A, Kato S, Watanabe H, Nunoura T, Nakamura K, Imachi H, Watsuji TO, Kojima S, Takai K, Sawabe T.

ISME J. 2017 Apr;11(4):909-919. doi: 10.1038/ismej.2016.178. Epub 2017 Jan 3.

13.

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments.

He Y, Li M, Perumal V, Feng X, Fang J, Xie J, Sievert SM, Wang F.

Nat Microbiol. 2016 Apr 4;1(6):16035. doi: 10.1038/nmicrobiol.2016.35.

PMID:
27572832
14.

Bacterial diversity and successional patterns during biofilm formation on freshly exposed basalt surfaces at diffuse-flow deep-sea vents.

Gulmann LK, Beaulieu SE, Shank TM, Ding K, Seyfried WE, Sievert SM.

Front Microbiol. 2015 Sep 10;6:901. doi: 10.3389/fmicb.2015.00901. eCollection 2015.

15.

Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula.

Signori CN, Thomas F, Enrich-Prast A, Pollery RC, Sievert SM.

Front Microbiol. 2014 Dec 16;5:647. doi: 10.3389/fmicb.2014.00647. eCollection 2014.

16.

Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments.

Thomas F, Giblin AE, Cardon ZG, Sievert SM.

Front Microbiol. 2014 Jun 24;5:309. doi: 10.3389/fmicb.2014.00309. eCollection 2014.

17.

Pan-genome analyses identify lineage- and niche-specific markers of evolution and adaptation in Epsilonproteobacteria.

Zhang Y, Sievert SM.

Front Microbiol. 2014 Mar 19;5:110. doi: 10.3389/fmicb.2014.00110. eCollection 2014.

18.

Insights into the phylogeny and coding potential of microbial dark matter.

Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T.

Nature. 2013 Jul 25;499(7459):431-7. doi: 10.1038/nature12352. Epub 2013 Jul 14.

PMID:
23851394
19.

Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics.

Gardebrecht A, Markert S, Sievert SM, Felbeck H, Thürmer A, Albrecht D, Wollherr A, Kabisch J, Le Bris N, Lehmann R, Daniel R, Liesegang H, Hecker M, Schweder T.

ISME J. 2012 Apr;6(4):766-76. doi: 10.1038/ismej.2011.137. Epub 2011 Oct 20.

20.

Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont.

Markert S, Gardebrecht A, Felbeck H, Sievert SM, Klose J, Becher D, Albrecht D, Thürmer A, Daniel R, Kleiner M, Hecker M, Schweder T.

Proteomics. 2011 Aug;11(15):3106-17. doi: 10.1002/pmic.201100059. Epub 2011 Jun 28.

PMID:
21710568
21.

Beyond the Calvin cycle: autotrophic carbon fixation in the ocean.

Hügler M, Sievert SM.

Ann Rev Mar Sci. 2011;3:261-89. Review.

PMID:
21329206
22.

Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.

Hügler M, Petersen JM, Dubilier N, Imhoff JF, Sievert SM.

PLoS One. 2011 Jan 7;6(1):e16018. doi: 10.1371/journal.pone.0016018.

23.

Insights into chemotaxonomic composition and carbon cycling of phototrophic communities in an artesian sulfur-rich spring (Zodletone, Oklahoma, USA), a possible analog for ancient microbial mat systems.

Bühring SI, Sievert SM, Jonkers HM, Ertefai T, Elshahed MS, Krumholz LR, Hinrichs KU.

Geobiology. 2011 Mar;9(2):166-79. doi: 10.1111/j.1472-4669.2010.00268.x. Epub 2011 Jan 19.

PMID:
21244620
24.

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries.

Xie W, Wang F, Guo L, Chen Z, Sievert SM, Meng J, Huang G, Li Y, Yan Q, Wu S, Wang X, Chen S, He G, Xiao X, Xu A.

ISME J. 2011 Mar;5(3):414-26. doi: 10.1038/ismej.2010.144. Epub 2010 Oct 7.

25.

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea.

Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hügler M, Karr EA, Könneke M, Shin M, Lawton TJ, Lowe T, Martens-Habbena W, Sayavedra-Soto LA, Lang D, Sievert SM, Rosenzweig AC, Manning G, Stahl DA.

Proc Natl Acad Sci U S A. 2010 May 11;107(19):8818-23. doi: 10.1073/pnas.0913533107. Epub 2010 Apr 26.

26.

An improved method for nanogold in situ hybridization visualized with environmental scanning electron microscopy.

Ehrhardt CJ, Haymon RM, Sievert SM, Holden PA.

J Microsc. 2009 Oct;236(1):5-10. doi: 10.1111/j.1365-2818.2009.03207.x. No abstract available.

27.

Culture dependent and independent analyses of 16S rRNA and ATP citrate lyase genes: a comparison of microbial communities from different black smoker chimneys on the Mid-Atlantic Ridge.

Voordeckers JW, Do MH, Hügler M, Ko V, Sievert SM, Vetriani C.

Extremophiles. 2008 Sep;12(5):627-40. doi: 10.1007/s00792-008-0167-5. Epub 2008 Jun 5.

PMID:
18523725
28.

Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans.

Sievert SM, Scott KM, Klotz MG, Chain PS, Hauser LJ, Hemp J, Hügler M, Land M, Lapidus A, Larimer FW, Lucas S, Malfatti SA, Meyer F, Paulsen IT, Ren Q, Simon J; USF Genomics Class.

Appl Environ Microbiol. 2008 Feb;74(4):1145-56. Epub 2007 Dec 7.

29.

Anaerobic oxidation of short-chain hydrocarbons by marine sulphate-reducing bacteria.

Kniemeyer O, Musat F, Sievert SM, Knittel K, Wilkes H, Blumenberg M, Michaelis W, Classen A, Bolm C, Joye SB, Widdel F.

Nature. 2007 Oct 18;449(7164):898-901. Epub 2007 Sep 19.

PMID:
17882164
30.

Growth and mechanism of filamentous-sulfur formation by Candidatus Arcobacter sulfidicus in opposing oxygen-sulfide gradients.

Sievert SM, Wieringa EB, Wirsen CO, Taylor CD.

Environ Microbiol. 2007 Jan;9(1):271-6.

PMID:
17227432
31.
32.

Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila.

Markert S, Arndt C, Felbeck H, Becher D, Sievert SM, Hügler M, Albrecht D, Robidart J, Bench S, Feldman RA, Hecker M, Schweder T.

Science. 2007 Jan 12;315(5809):247-50.

33.

The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2.

Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA, Davis CR, Detter C, Do KF, Dobrinski KP, Faza BI, Fitzpatrick KA, Freyermuth SK, Harmer TL, Hauser LJ, Hügler M, Kerfeld CA, Klotz MG, Kong WW, Land M, Lapidus A, Larimer FW, Longo DL, Lucas S, Malfatti SA, Massey SE, Martin DD, McCuddin Z, Meyer F, Moore JL, Ocampo LH Jr, Paul JH, Paulsen IT, Reep DK, Ren Q, Ross RL, Sato PY, Thomas P, Tinkham LE, Zeruth GT.

PLoS Biol. 2006 Nov;4(12):e383.

35.
36.

Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified coastal salt pond.

Simmons SL, Sievert SM, Frankel RB, Bazylinski DA, Edwards KJ.

Appl Environ Microbiol. 2004 Oct;70(10):6230-9.

37.

Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur.

Wirsen CO, Sievert SM, Cavanaugh CM, Molyneaux SJ, Ahmad A, Taylor LT, DeLong EF, Taylor CD.

Appl Environ Microbiol. 2002 Jan;68(1):316-25.

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