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Items: 23

1.

Protein production in Escherichia coli is guided by the trade-off between intracellular substrate availability and energy cost.

Nieß A, Siemann-Herzberg M, Takors R.

Microb Cell Fact. 2019 Jan 17;18(1):8. doi: 10.1186/s12934-019-1057-5.

2.

Cell-Free Protein Synthesis From Fast-Growing Vibrio natriegens.

Failmezger J, Scholz S, Blombach B, Siemann-Herzberg M.

Front Microbiol. 2018 Jun 1;9:1146. doi: 10.3389/fmicb.2018.01146. eCollection 2018.

3.

Cell-free protein synthesis from non-growing, stressed Escherichia coli.

Failmezger J, Rauter M, Nitschel R, Kraml M, Siemann-Herzberg M.

Sci Rep. 2017 Nov 28;7(1):16524. doi: 10.1038/s41598-017-16767-7.

4.

Experimentally Validated Model Enables Debottlenecking of in Vitro Protein Synthesis and Identifies a Control Shift under in Vivo Conditions.

Nieß A, Failmezger J, Kuschel M, Siemann-Herzberg M, Takors R.

ACS Synth Biol. 2017 Oct 20;6(10):1913-1921. doi: 10.1021/acssynbio.7b00117. Epub 2017 Jul 3.

PMID:
28627886
5.

Quantifying ribosome dynamics in Escherichia coli using fluorescence.

Failmezger J, Ludwig J, Nieß A, Siemann-Herzberg M.

FEMS Microbiol Lett. 2017 Mar 1;364(6). doi: 10.1093/femsle/fnx055.

PMID:
28333278
6.

Escherichia coli HGT: Engineered for high glucose throughput even under slowly growing or resting conditions.

Michalowski A, Siemann-Herzberg M, Takors R.

Metab Eng. 2017 Mar;40:93-103. doi: 10.1016/j.ymben.2017.01.005. Epub 2017 Jan 18.

PMID:
28110078
7.

Site-Specific Cleavage of Ribosomal RNA in Escherichia coli-Based Cell-Free Protein Synthesis Systems.

Failmezger J, Nitschel R, Sánchez-Kopper A, Kraml M, Siemann-Herzberg M.

PLoS One. 2016 Dec 19;11(12):e0168764. doi: 10.1371/journal.pone.0168764. eCollection 2016.

8.

Teaching bioprocess engineering to undergraduates: Multidisciplinary hands-on training in a one-week practical course.

Henkel M, Zwick M, Beuker J, Willenbacher J, Baumann S, Oswald F, Neumann A, Siemann-Herzberg M, Syldatk C, Hausmann R.

Biochem Mol Biol Educ. 2015 May-Jun;43(3):189-202. doi: 10.1002/bmb.20860. Epub 2015 Mar 27.

9.

Process development of periplasmatically produced single chain fragment variable against epidermal growth factor receptor in Escherichia coli.

Lindner R, Moosmann A, Dietrich A, Böttinger H, Kontermann R, Siemann-Herzberg M.

J Biotechnol. 2014 Dec 20;192 Pt A:136-45.

PMID:
25450642
10.

The functional structure of central carbon metabolism in Pseudomonas putida KT2440.

Sudarsan S, Dethlefsen S, Blank LM, Siemann-Herzberg M, Schmid A.

Appl Environ Microbiol. 2014 Sep;80(17):5292-303. doi: 10.1128/AEM.01643-14. Epub 2014 Jun 20.

11.

Evolution of pyruvate kinase-deficient Escherichia coli mutants enables glycerol-based cell growth and succinate production.

Soellner S, Rahnert M, Siemann-Herzberg M, Takors R, Altenbuchner J.

J Appl Microbiol. 2013 Dec;115(6):1368-78. doi: 10.1111/jam.12333. Epub 2013 Sep 6.

12.

Self-inducible Bacillus subtilis expression system for reliable and inexpensive protein production by high-cell-density fermentation.

Wenzel M, Müller A, Siemann-Herzberg M, Altenbuchner J.

Appl Environ Microbiol. 2011 Sep;77(18):6419-25. doi: 10.1128/AEM.05219-11. Epub 2011 Jul 29.

13.

Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains.

Canelas AB, Harrison N, Fazio A, Zhang J, Pitkänen JP, van den Brink J, Bakker BM, Bogner L, Bouwman J, Castrillo JI, Cankorur A, Chumnanpuen P, Daran-Lapujade P, Dikicioglu D, van Eunen K, Ewald JC, Heijnen JJ, Kirdar B, Mattila I, Mensonides FI, Niebel A, Penttilä M, Pronk JT, Reuss M, Salusjärvi L, Sauer U, Sherman D, Siemann-Herzberg M, Westerhoff H, de Winde J, Petranovic D, Oliver SG, Workman CT, Zamboni N, Nielsen J.

Nat Commun. 2010;1:145. doi: 10.1038/ncomms1150.

PMID:
21266995
14.

Quantifying cytosolic messenger RNA concentrations in Escherichia coli using real-time polymerase chain reaction for a systems biology approach.

Schuhmacher T, Lemuth K, Hardiman T, Vacun G, Reuss M, Siemann-Herzberg M.

Anal Biochem. 2010 Mar 15;398(2):212-7. doi: 10.1016/j.ab.2009.11.025. Epub 2009 Nov 20.

PMID:
19932074
15.

Prediction of kinetic parameters from DNA-binding site sequences for modeling global transcription dynamics in Escherichia coli.

Hardiman T, Meinhold H, Hofmann J, Ewald JC, Siemann-Herzberg M, Reuss M.

Metab Eng. 2010 May;12(3):196-211. doi: 10.1016/j.ymben.2009.10.006. Epub 2009 Nov 4.

PMID:
19895901
16.

Global transcription and metabolic flux analysis of Escherichia coli in glucose-limited fed-batch cultivations.

Lemuth K, Hardiman T, Winter S, Pfeiffer D, Keller MA, Lange S, Reuss M, Schmid RD, Siemann-Herzberg M.

Appl Environ Microbiol. 2008 Nov;74(22):7002-15. doi: 10.1128/AEM.01327-08. Epub 2008 Sep 19.

17.

In vitro synthesis and characterization of guanosine 3',5'-bis(diphosphate).

Hardiman T, Windeisen V, Ewald JC, Zibek S, Schlack P, Rebell J, Reuss M, Siemann-Herzberg M.

Anal Biochem. 2008 Dec 15;383(2):337-9. doi: 10.1016/j.ab.2008.07.042. Epub 2008 Aug 22.

PMID:
18789883
18.

Dynamic response of the expression of hxt1, hxt5 and hxt7 transport proteins in Saccharomyces cerevisiae to perturbations in the extracellular glucose concentration.

Buziol S, Warth L, Magario I, Freund A, Siemann-Herzberg M, Reuss M.

J Biotechnol. 2008 Apr 30;134(3-4):203-10. doi: 10.1016/j.jbiotec.2008.02.002. Epub 2008 Feb 13.

PMID:
18367282
19.

Quantification of rRNA in Escherichia coli using capillary gel electrophoresis with laser-induced fluorescence detection.

Hardiman T, Ewald JC, Lemuth K, Reuss M, Siemann-Herzberg M.

Anal Biochem. 2008 Mar 1;374(1):79-86. Epub 2007 Sep 29.

PMID:
17967436
20.

Topology of the global regulatory network of carbon limitation in Escherichia coli.

Hardiman T, Lemuth K, Keller MA, Reuss M, Siemann-Herzberg M.

J Biotechnol. 2007 Dec 1;132(4):359-74. Epub 2007 Aug 21.

PMID:
17913275
21.

Protein purification using magnetic adsorbent particles.

Franzreb M, Siemann-Herzberg M, Hobley TJ, Thomas OR.

Appl Microbiol Biotechnol. 2006 May;70(5):505-16. Epub 2006 Feb 23. Review.

PMID:
16496138
22.

Model-based inference of gene expression dynamics from sequence information.

Arnold S, Siemann-Herzberg M, Schmid J, Reuss M.

Adv Biochem Eng Biotechnol. 2005;100:89-179. Review.

PMID:
16270657
23.

Hydantoinases and related enzymes as biocatalysts for the synthesis of unnatural chiral amino acids.

Altenbuchner J, Siemann-Herzberg M, Syldatk C.

Curr Opin Biotechnol. 2001 Dec;12(6):559-63. Review.

PMID:
11849938

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