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Items: 49

1.

Measurement data of an air-to-air membrane enthalpy and a heat exchanger.

Siegele D.

Data Brief. 2019 Sep 12;26:104453. doi: 10.1016/j.dib.2019.104453. eCollection 2019 Oct.

2.

Phenotype annotation with the ontology of microbial phenotypes (OMP).

Siegele DA, LaBonte SA, Wu PI, Chibucos MC, Nandendla S, Giglio MG, Hu JC.

J Biomed Semantics. 2019 Jul 15;10(1):13. doi: 10.1186/s13326-019-0205-5.

3.

Bacteria-to-Human Protein Networks Reveal Origins of Endogenous DNA Damage.

Xia J, Chiu LY, Nehring RB, Bravo Núñez MA, Mei Q, Perez M, Zhai Y, Fitzgerald DM, Pribis JP, Wang Y, Hu CW, Powell RT, LaBonte SA, Jalali A, Matadamas Guzmán ML, Lentzsch AM, Szafran AT, Joshi MC, Richters M, Gibson JL, Frisch RL, Hastings PJ, Bates D, Queitsch C, Hilsenbeck SG, Coarfa C, Hu JC, Siegele DA, Scott KL, Liang H, Mancini MA, Herman C, Miller KM, Rosenberg SM.

Cell. 2019 Jan 10;176(1-2):127-143.e24. doi: 10.1016/j.cell.2018.12.008.

4.

ECO, the Evidence & Conclusion Ontology: community standard for evidence information.

Giglio M, Tauber R, Nadendla S, Munro J, Olley D, Ball S, Mitraka E, Schriml LM, Gaudet P, Hobbs ET, Erill I, Siegele DA, Hu JC, Mungall C, Chibucos MC.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1186-D1194. doi: 10.1093/nar/gky1036.

5.

The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations.

Chibucos MC, Siegele DA, Hu JC, Giglio M.

Methods Mol Biol. 2017;1446:245-259.

6.

An ontology for microbial phenotypes.

Chibucos MC, Zweifel AE, Herrera JC, Meza W, Eslamfam S, Uetz P, Siegele DA, Hu JC, Giglio MG.

BMC Microbiol. 2014 Nov 30;14:294. doi: 10.1186/s12866-014-0294-3.

7.

Heat shock transcription factor σ32 co-opts the signal recognition particle to regulate protein homeostasis in E. coli.

Lim B, Miyazaki R, Neher S, Siegele DA, Ito K, Walter P, Akiyama Y, Yura T, Gross CA.

PLoS Biol. 2013 Dec;11(12):e1001735. doi: 10.1371/journal.pbio.1001735. Epub 2013 Dec 17.

8.

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD, Altman T.

Nucleic Acids Res. 2014 Jan;42(Database issue):D677-84. doi: 10.1093/nar/gkt1203. Epub 2013 Nov 26. Erratum in: Nucleic Acids Res. 2014 Oct 29;42(19):12330.

9.

Gene Ontology annotations and resources.

Gene Ontology Consortium, Blake JA, Dolan M, Drabkin H, Hill DP, Li N, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chrisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Bely B, Blatter M-, Bonilla C, Bouguerleret L, Boutet E, Breuza L, Bridge A, Chan WM, Chavali G, Coudert E, Dimmer E, Estreicher A, Famiglietti L, Feuermann M, Gos A, Gruaz-Gumowski N, Hieta R, Hinz C, Hulo C, Huntley R, James J, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Mutowo-Muellenet P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millán P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulgar R, Lomax J, Roncaglia P, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Giglio MG, Chang H-, Hunter S, McAnulla C, Mitchell A, Sangrador A, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall DM, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang S-, Petri V, Lowry T, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hitz BC, Hong EL, Karra K, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Huala E, Mi H, Thomas PD, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D530-5. doi: 10.1093/nar/gks1050. Epub 2012 Nov 17.

10.

GONUTS: the Gene Ontology Normal Usage Tracking System.

Renfro DP, McIntosh BK, Venkatraman A, Siegele DA, Hu JC.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1262-9. doi: 10.1093/nar/gkr907. Epub 2011 Nov 22.

11.

EcoliWiki: a wiki-based community resource for Escherichia coli.

McIntosh BK, Renfro DP, Knapp GS, Lairikyengbam CR, Liles NM, Niu L, Supak AM, Venkatraman A, Zweifel AE, Siegele DA, Hu JC.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1270-7. doi: 10.1093/nar/gkr880. Epub 2011 Nov 7.

12.

Mutations in the flhD gene of Escherichia coli K-12 do not cause the reported effect on cell division.

Siegele DA, Bain S, Mao W.

FEMS Microbiol Lett. 2010 Aug 1;309(1):94-9. doi: 10.1111/j.1574-6968.2010.02021.x. Epub 2010 May 20.

13.

A previously uncharacterized gene, yjfO (bsmA), influences Escherichia coli biofilm formation and stress response.

Weber MM, French CL, Barnes MB, Siegele DA, McLean RJ.

Microbiology. 2010 Jan;156(Pt 1):139-47. doi: 10.1099/mic.0.031468-0. Epub 2009 Oct 15.

14.

What we can learn about Escherichia coli through application of Gene Ontology.

Hu JC, Karp PD, Keseler IM, Krummenacker M, Siegele DA.

Trends Microbiol. 2009 Jul;17(7):269-78. doi: 10.1016/j.tim.2009.04.004. Epub 2009 Jul 1. Review.

15.

High-throughput, quantitative analyses of genetic interactions in E. coli.

Typas A, Nichols RJ, Siegele DA, Shales M, Collins SR, Lim B, Braberg H, Yamamoto N, Takeuchi R, Wanner BL, Mori H, Weissman JS, Krogan NJ, Gross CA.

Nat Methods. 2008 Sep;5(9):781-7.

16.

The emerging world of wikis.

Hu JC, Aramayo R, Bolser D, Conway T, Elsik CG, Gribskov M, Kelder T, Kihara D, Knight TF Jr, Pico AR, Siegele DA, Wanner BL, Welch RD.

Science. 2008 Jun 6;320(5881):1289-90. doi: 10.1126/science.320.5881.1289b. No abstract available.

PMID:
18535227
17.
18.

Universal stress proteins in Escherichia coli.

Siegele DA.

J Bacteriol. 2005 Sep;187(18):6253-4. No abstract available.

19.

MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays.

Ganesh R, Siegele DA, Ioerger TR.

Pac Symp Biocomput. 2003:41-52.

20.

Proteome analysis of Escherichia coli K-12 by two-dimensional native-state chromatography and MALDI-MS.

Champion MM, Campbell CS, Siegele DA, Russell DH, Hu JC.

Mol Microbiol. 2003 Jan;47(2):383-96.

21.

Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response.

Arnold CN, McElhanon J, Lee A, Leonhart R, Siegele DA.

J Bacteriol. 2001 Apr;183(7):2178-86.

22.

Green fluorescent protein as a reporter of transcriptional activity in a prokaryotic system.

Siegele DA, Campbell L, Hu JC.

Methods Enzymol. 2000;305:499-513. No abstract available.

PMID:
10812622
23.
24.
25.

Escherichia coli proteins synthesized during recovery from starvation.

Siegele DA, Guynn LJ.

J Bacteriol. 1996 Nov;178(21):6352-6.

26.
27.
28.

Microbial competition: Escherichia coli mutants that take over stationary phase cultures.

Zambrano MM, Siegele DA, Almirón M, Tormo A, Kolter R.

Science. 1993 Mar 19;259(5102):1757-60.

PMID:
7681219
29.

The stationary phase of the bacterial life cycle.

Kolter R, Siegele DA, Tormo A.

Annu Rev Microbiol. 1993;47:855-74. Review.

PMID:
8257118
30.
31.

Polypeptides containing highly conserved regions of transcription initiation factor sigma 70 exhibit specificity of binding to promoter DNA.

Dombroski AJ, Walter WA, Record MT Jr, Siegele DA, Gross CA.

Cell. 1992 Aug 7;70(3):501-12.

PMID:
1643661
32.

Life after log.

Siegele DA, Kolter R.

J Bacteriol. 1992 Jan;174(2):345-8. Review. No abstract available.

33.

Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase.

Siegele DA, Hu JC, Walter WA, Gross CA.

J Mol Biol. 1989 Apr 20;206(4):591-603.

PMID:
2661828
34.

Numerical investigations of the influence of implant shape on stress distribution in the jaw bone.

Siegele D, Soltesz U.

Int J Oral Maxillofac Implants. 1989 Winter;4(4):333-40.

PMID:
2639862
35.

Mutations in rpoD, the gene encoding the sigma 70 subunit of Escherichia coli RNA polymerase, that increase expression of the lac operon in the absence of CAP-cAMP.

Siegele DA, Hu JC, Gross CA.

J Mol Biol. 1988 Sep 5;203(1):29-37. Erratum in: J Mol Biol 1989 Jan 20;205(2):469.

PMID:
2846853
36.

[Numerical study of the set-back and oscillation behavior of teeth as illustrated by a maxillary incisor].

Siegele D, Soltész U, Topkaya A.

Dtsch Zahnarztl Z. 1986 Jun;41(6):628-34. German. No abstract available.

PMID:
3461986
37.

The terminase of bacteriophage lambda. Functional domains for cosB binding and multimer assembly.

Frackman S, Siegele DA, Feiss M.

J Mol Biol. 1985 May 25;183(2):225-38.

PMID:
2989542
38.

The regulation of transcription initiation in bacteria.

Reznikoff WS, Siegele DA, Cowing DW, Gross CA.

Annu Rev Genet. 1985;19:355-87. Review. No abstract available.

PMID:
3936407
39.

A functional domain of bacteriophage lambda terminase for prohead binding.

Frackman S, Siegele DA, Feiss M.

J Mol Biol. 1984 Dec 5;180(2):283-300.

PMID:
6096564
40.

Longitudinal evaluation of a model post-master's program in oncology nursing education.

Siegele D.

Oncol Nurs Forum. 1984 May-Jun;11(3):61-2. No abstract available.

PMID:
6562641
41.

The head genes of bacteriophage 21.

Siegele DA, Frackman S, Sippy J, Momany T, Howard TM, Tilly K, Georgopoulos C, Feiss M.

Virology. 1983 Sep;129(2):484-9.

PMID:
6226144
42.

Cosmid DNA packaging in vivo.

Feiss M, Siegele DA, Rudolph CF, Frackman S.

Gene. 1982 Feb;17(2):123-30.

PMID:
6211394
43.

[Stress distributions around a staged implant in a model trial and its comparison to simple basic forms].

Soltész U, Siegele D, Riedmüller J.

Dtsch Zahnarztl Z. 1981 Sep;36(9):571-8. German. No abstract available.

PMID:
6945986
44.

Bacteriophage lambda and 21 packaging specificities.

Feiss M, Fisher R, Siegele DA, Widner W.

Prog Clin Biol Res. 1981;64:213-22. No abstract available.

PMID:
6460254
45.

Packaging of the bacteriophage lambda chromosome: a role for base sequences outside cos.

Feiss M, Fisher RA, Siegele DA, Nichols BP, Donelson JE.

Virology. 1979 Jan 15;92(1):56-67. No abstract available.

PMID:
419695
46.

Packaging of the bacteriophage lambda chromosome: dependence of cos cleavage on chromosome length.

Feiss M, Siegele DA.

Virology. 1979 Jan 15;92(1):190-200. No abstract available.

PMID:
419690
47.

A study of baccalaureate students in a rehabilitation setting.

Siegele DS.

ARN J. 1978 Jan-Feb;3(1):15-9. No abstract available.

PMID:
245987
48.

Pain and suffering. The gate control theory.

Siegele DS.

Am J Nurs. 1974 Mar;74(3):498-502. No abstract available.

PMID:
4361027
49.

Clinical practitioners--you and I or we?

Siegele DS.

ANA Clin Conf. 1969:42-6. No abstract available.

PMID:
5201654

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