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The Carbon Switch at the Level of Pyruvate and Phosphoenolpyruvate in Sulfolobus solfataricus P2.

Haferkamp P, Tjaden B, Shen L, Bräsen C, Kouril T, Siebers B.

Front Microbiol. 2019 Apr 12;10:757. doi: 10.3389/fmicb.2019.00757. eCollection 2019.


A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius.

Wang K, Sybers D, Maklad HR, Lemmens L, Lewyllie C, Zhou X, Schult F, Bräsen C, Siebers B, Valegård K, Lindås AC, Peeters E.

Nat Commun. 2019 Apr 4;10(1):1542. doi: 10.1038/s41467-019-09479-1.


Thermoacidophilic Sulfolobus species as source for extremozymes and as novel archaeal platform organisms.

Schocke L, Bräsen C, Siebers B.

Curr Opin Biotechnol. 2019 Mar 12;59:71-77. doi: 10.1016/j.copbio.2019.02.012. [Epub ahead of print] Review.


Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.

Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum SP, Jakobi T, Schouten S, Neumann-Schaal M, Wright PC, Kalinowski J, Siebers B, Albers SV.

Front Microbiol. 2019 Jan 10;9:3201. doi: 10.3389/fmicb.2018.03201. eCollection 2018.


Discovering novel hydrolases from hot environments.

Wohlgemuth R, Littlechild J, Monti D, Schnorr K, van Rossum T, Siebers B, Menzel P, Kublanov IV, Rike AG, Skretas G, Szabo Z, Peng X, Young MJ.

Biotechnol Adv. 2018 Dec;36(8):2077-2100. doi: 10.1016/j.biotechadv.2018.09.004. Epub 2018 Sep 25. Review.


Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.

Schult F, Le TN, Albersmeier A, Rauch B, Blumenkamp P, van der Does C, Goesmann A, Kalinowski J, Albers SV, Siebers B.

Nucleic Acids Res. 2018 Aug 21;46(14):7179-7192. doi: 10.1093/nar/gky527.


Sulfolobus - A Potential Key Organism in Future Biotechnology.

Quehenberger J, Shen L, Albers SV, Siebers B, Spadiut O.

Front Microbiol. 2017 Dec 12;8:2474. doi: 10.3389/fmicb.2017.02474. eCollection 2017. Review.


Insights into the evolutionary conserved regulation of Rio ATPase activity.

Knüppel R, Christensen RH, Gray FC, Esser D, Strauß D, Medenbach J, Siebers B, MacNeill SA, LaRonde N, Ferreira-Cerca S.

Nucleic Acids Res. 2018 Feb 16;46(3):1441-1456. doi: 10.1093/nar/gkx1236.


Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway.

Wagner M, Shen L, Albersmeier A, van der Kolk N, Kim S, Cha J, Bräsen C, Kalinowski J, Siebers B, Albers SV.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e01273-17. doi: 10.1128/AEM.01273-17. Print 2018 Feb 1.


Editorial: Applied Microbiology for Chemical Syntheses.

Kourist R, González-Sabín J, Siebers B, Julsing M.

Front Microbiol. 2017 Oct 11;8:1931. doi: 10.3389/fmicb.2017.01931. eCollection 2017. No abstract available.


Phosphoglycerate kinase acts as a futile cycle at high temperature.

Kouril T, Eicher JJ, Siebers B, Snoep JL.

Microbiology. 2017 Nov;163(11):1604-1612. doi: 10.1099/mic.0.000542. Epub 2017 Oct 6.


Systems biology of the modified branched Entner-Doudoroff pathway in Sulfolobus solfataricus.

Figueiredo AS, Kouril T, Esser D, Haferkamp P, Wieloch P, Schomburg D, Ruoff P, Siebers B, Schaber J.

PLoS One. 2017 Jul 10;12(7):e0180331. doi: 10.1371/journal.pone.0180331. eCollection 2017.


Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.

Stark H, Wolf J, Albersmeier A, Pham TK, Hofmann JD, Siebers B, Kalinowski J, Wright PC, Neumann-Schaal M, Schomburg D.

FEBS J. 2017 Jul;284(13):2078-2095. doi: 10.1111/febs.14105. Epub 2017 May 29.


Activity-based protein profiling as a robust method for enzyme identification and screening in extremophilic Archaea.

Zweerink S, Kallnik V, Ninck S, Nickel S, Verheyen J, Blum M, Wagner A, Feldmann I, Sickmann A, Albers SV, Bräsen C, Kaschani F, Siebers B, Kaiser M.

Nat Commun. 2017 May 8;8:15352. doi: 10.1038/ncomms15352.


The Peculiar Glycolytic Pathway in Hyperthermophylic Archaea: Understanding Its Whims by Experimentation In Silico.

Zhang Y, Kouril T, Snoep JL, Siebers B, Barberis M, Westerhoff HV.

Int J Mol Sci. 2017 Apr 20;18(4). pii: E876. doi: 10.3390/ijms18040876.


Magnetic polaron on dangling-bond spins in CdSe colloidal nanocrystals.

Biadala L, Shornikova EV, Rodina AV, Yakovlev DR, Siebers B, Aubert T, Nasilowski M, Hens Z, Dubertret B, Efros AL, Bayer M.

Nat Nanotechnol. 2017 Jul;12(6):569-574. doi: 10.1038/nnano.2017.22. Epub 2017 Mar 13.


A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose.

Wolf J, Stark H, Fafenrot K, Albersmeier A, Pham TK, Müller KB, Meyer BH, Hoffmann L, Shen L, Albaum SP, Kouril T, Schmidt-Hohagen K, Neumann-Schaal M, Bräsen C, Kalinowski J, Wright PC, Albers SV, Schomburg D, Siebers B.

Mol Microbiol. 2016 Dec;102(5):882-908. doi: 10.1111/mmi.13498. Epub 2016 Oct 27.


Protein phosphorylation and its role in archaeal signal transduction.

Esser D, Hoffmann L, Pham TK, Bräsen C, Qiu W, Wright PC, Albers SV, Siebers B.

FEMS Microbiol Rev. 2016 Sep;40(5):625-47. doi: 10.1093/femsre/fuw020. Epub 2016 Jul 29. Review.


Isolation and Characterization of the First Xylanolytic Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1 and Its Unusual Multidomain Glycosidase.

Gavrilov SN, Stracke C, Jensen K, Menzel P, Kallnik V, Slesarev A, Sokolova T, Zayulina K, Bräsen C, Bonch-Osmolovskaya EA, Peng X, Kublanov IV, Siebers B.

Front Microbiol. 2016 May 3;7:552. doi: 10.3389/fmicb.2016.00552. eCollection 2016.


Band-Edge Exciton Fine Structure and Recombination Dynamics in InP/ZnS Colloidal Nanocrystals.

Biadala L, Siebers B, Beyazit Y, Tessier MD, Dupont D, Hens Z, Yakovlev DR, Bayer M.

ACS Nano. 2016 Mar 22;10(3):3356-64. doi: 10.1021/acsnano.5b07065. Epub 2016 Feb 24.


Isolation of Extracellular Polymeric Substances from Biofilms of the Thermoacidophilic Archaeon Sulfolobus acidocaldarius.

Jachlewski S, Jachlewski WD, Linne U, Bräsen C, Wingender J, Siebers B.

Front Bioeng Biotechnol. 2015 Aug 27;3:123. doi: 10.3389/fbioe.2015.00123. eCollection 2015.


Origins of major archaeal clades correspond to gene acquisitions from bacteria.

Nelson-Sathi S, Sousa FL, Roettger M, Lozada-Chávez N, Thiergart T, Janssen A, Bryant D, Landan G, Schönheit P, Siebers B, McInerney JO, Martin WF.

Nature. 2015 Jan 1;517(7532):77-80. doi: 10.1038/nature13805. Epub 2014 Oct 15.


One-step synthesis of 2-keto-3-deoxy-d-gluconate by biocatalytic dehydration of d-gluconate.

Matsubara K, Köhling R, Schönenberger B, Kouril T, Esser D, Bräsen C, Siebers B, Wohlgemuth R.

J Biotechnol. 2014 Dec 10;191:69-77. doi: 10.1016/j.jbiotec.2014.06.005. Epub 2014 Jul 14.


Characterization of a phosphotriesterase-like lactonase from the hyperthermoacidophilic crenarchaeon Vulcanisaeta moutnovskia.

Kallnik V, Bunescu A, Sayer C, Bräsen C, Wohlgemuth R, Littlechild J, Siebers B.

J Biotechnol. 2014 Nov 20;190:11-7. doi: 10.1016/j.jbiotec.2014.04.026. Epub 2014 May 21.


Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.

Bräsen C, Esser D, Rauch B, Siebers B.

Microbiol Mol Biol Rev. 2014 Mar;78(1):89-175. doi: 10.1128/MMBR.00041-13. Review.


Investigation of the malE promoter and MalR, a positive regulator of the maltose regulon, for an improved expression system in Sulfolobus acidocaldarius.

Wagner M, Wagner A, Ma X, Kort JC, Ghosh A, Rauch B, Siebers B, Albers SV.

Appl Environ Microbiol. 2014 Feb;80(3):1072-81. doi: 10.1128/AEM.03050-13. Epub 2013 Nov 22.


Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius.

Reimann J, Esser D, Orell A, Amman F, Pham TK, Noirel J, Lindås AC, Bernander R, Wright PC, Siebers B, Albers SV.

Mol Cell Proteomics. 2013 Dec;12(12):3908-23. doi: 10.1074/mcp.M113.027375. Epub 2013 Sep 27.


A cool tool for hot and sour Archaea: proteomics of Sulfolobus solfataricus.

Kort JC, Esser D, Pham TK, Noirel J, Wright PC, Siebers B.

Proteomics. 2013 Oct;13(18-19):2831-50. doi: 10.1002/pmic.201300088. Review.


Intermediate instability at high temperature leads to low pathway efficiency for an in vitro reconstituted system of gluconeogenesis in Sulfolobus solfataricus.

Kouril T, Esser D, Kort J, Westerhoff HV, Siebers B, Snoep JL.

FEBS J. 2013 Sep;280(18):4666-80. doi: 10.1111/febs.12438. Epub 2013 Aug 22.


Lrs14 transcriptional regulators influence biofilm formation and cell motility of Crenarchaea.

Orell A, Peeters E, Vassen V, Jachlewski S, Schalles S, Siebers B, Albers SV.

ISME J. 2013 Oct;7(10):1886-98. doi: 10.1038/ismej.2013.68. Epub 2013 May 9.


The first prokaryotic trehalose synthase complex identified in the hyperthermophilic crenarchaeon Thermoproteus tenax.

Zaparty M, Hagemann A, Bräsen C, Hensel R, Lupas AN, Brinkmann H, Siebers B.

PLoS One. 2013 Apr 23;8(4):e61354. doi: 10.1371/journal.pone.0061354. Print 2013.


Atypical protein kinases of the RIO family in archaea.

Esser D, Siebers B.

Biochem Soc Trans. 2013 Feb 1;41(1):399-404. doi: 10.1042/BST20120317. Review.


Unraveling the function of paralogs of the aldehyde dehydrogenase super family from Sulfolobus solfataricus.

Esser D, Kouril T, Talfournier F, Polkowska J, Schrader T, Bräsen C, Siebers B.

Extremophiles. 2013 Mar;17(2):205-16. doi: 10.1007/s00792-012-0507-3. Epub 2013 Jan 8.


Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.

Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B.

FEBS J. 2013 Feb;280(4):1126-38. doi: 10.1111/febs.12106. Epub 2013 Jan 31.


Silver-doped calcium phosphate nanoparticles: synthesis, characterization, and toxic effects toward mammalian and prokaryotic cells.

Peetsch A, Greulich C, Braun D, Stroetges C, Rehage H, Siebers B, Köller M, Epple M.

Colloids Surf B Biointerfaces. 2013 Feb 1;102:724-9. doi: 10.1016/j.colsurfb.2012.09.040. Epub 2012 Oct 6.


Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus.

Ulas T, Riemer SA, Zaparty M, Siebers B, Schomburg D.

PLoS One. 2012;7(8):e43401. doi: 10.1371/journal.pone.0043401. Epub 2012 Aug 31.


Nanolattices of switchable DNA-based motors.

Saccà B, Siebers B, Meyer R, Bayer M, Niemeyer CM.

Small. 2012 Oct 8;8(19):3000-8. doi: 10.1002/smll.201200703. Epub 2012 Jul 3.


Change of carbon source causes dramatic effects in the phospho-proteome of the archaeon Sulfolobus solfataricus.

Esser D, Pham TK, Reimann J, Albers SV, Siebers B, Wright PC.

J Proteome Res. 2012 Oct 5;11(10):4823-33. doi: 10.1021/pr300190k. Epub 2012 Sep 14.


Complementation of Sulfolobus solfataricus PBL2025 with an α-mannosidase: effects on surface attachment and biofilm formation.

Koerdt A, Jachlewski S, Ghosh A, Wingender J, Siebers B, Albers SV.

Extremophiles. 2012 Jan;16(1):115-25. doi: 10.1007/s00792-011-0411-2. Epub 2011 Nov 18.


The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.

Siebers B, Zaparty M, Raddatz G, Tjaden B, Albers SV, Bell SD, Blombach F, Kletzin A, Kyrpides N, Lanz C, Plagens A, Rampp M, Rosinus A, von Jan M, Makarova KS, Klenk HP, Schuster SC, Hensel R.

PLoS One. 2011;6(10):e24222. doi: 10.1371/journal.pone.0024222. Epub 2011 Oct 7.


Functional curation of the Sulfolobus solfataricus P2 and S. acidocaldarius 98-3 complete genome sequences.

Esser D, Kouril T, Zaparty M, Sierocinski P, Chan PP, Lowe T, Van der Oost J, Albers SV, Schomburg D, Makarova KS, Siebers B.

Extremophiles. 2011 Nov;15(6):711-2. doi: 10.1007/s00792-011-0392-1. Epub 2011 Sep 13.


Functional analysis of archaeal MBF1 by complementation studies in yeast.

Marrero Coto J, Ehrenhofer-Murray AE, Pons T, Siebers B.

Biol Direct. 2011 Mar 10;6:18. doi: 10.1186/1745-6150-6-18.


An additional glucose dehydrogenase from Sulfolobus solfataricus: fine-tuning of sugar degradation?

Haferkamp P, Kutschki S, Treichel J, Hemeda H, Sewczyk K, Hoffmann D, Zaparty M, Siebers B.

Biochem Soc Trans. 2011 Jan;39(1):77-81. doi: 10.1042/BST0390077.


"Hot standards" for the thermoacidophilic archaeon Sulfolobus solfataricus.

Zaparty M, Esser D, Gertig S, Haferkamp P, Kouril T, Manica A, Pham TK, Reimann J, Schreiber K, Sierocinski P, Teichmann D, van Wolferen M, von Jan M, Wieloch P, Albers SV, Driessen AJ, Klenk HP, Schleper C, Schomburg D, van der Oost J, Wright PC, Siebers B.

Extremophiles. 2010 Jan;14(1):119-42. doi: 10.1007/s00792-009-0280-0. Epub 2009 Oct 4.


SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.

Albers SV, Birkeland NK, Driessen AJ, Gertig S, Haferkamp P, Klenk HP, Kouril T, Manica A, Pham TK, Ruoff P, Schleper C, Schomburg D, Sharkey KJ, Siebers B, Sierocinski P, Steuer R, van der Oost J, Westerhoff HV, Wieloch P, Wright PC, Zaparty M.

Biochem Soc Trans. 2009 Feb;37(Pt 1):58-64. doi: 10.1042/BST0370058.


The central carbohydrate metabolism of the hyperthermophilic crenarchaeote Thermoproteus tenax: pathways and insights into their regulation.

Zaparty M, Tjaden B, Hensel R, Siebers B.

Arch Microbiol. 2008 Sep;190(3):231-45. doi: 10.1007/s00203-008-0375-5. Epub 2008 May 20. Review.


A novel trehalose synthesizing pathway in the hyperthermophilic Crenarchaeon Thermoproteus tenax: the unidirectional TreT pathway.

Kouril T, Zaparty M, Marrero J, Brinkmann H, Siebers B.

Arch Microbiol. 2008 Sep;190(3):355-69. doi: 10.1007/s00203-008-0377-3. Epub 2008 May 16.


Crystal structure and stereochemical studies of KD(P)G aldolase from Thermoproteus tenax.

Pauluhn A, Ahmed H, Lorentzen E, Buchinger S, Schomburg D, Siebers B, Pohl E.

Proteins. 2008 Jul;72(1):35-43. doi: 10.1002/prot.21890.


DNA microarray analysis of central carbohydrate metabolism: glycolytic/gluconeogenic carbon switch in the hyperthermophilic crenarchaeum Thermoproteus tenax.

Zaparty M, Zaigler A, Stamme C, Soppa J, Hensel R, Siebers B.

J Bacteriol. 2008 Mar;190(6):2231-8. doi: 10.1128/JB.01524-07. Epub 2008 Jan 4.

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