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Items: 47

1.

PCR assays for detection of human astroviruses: In silico evaluation and design, and in vitro application to samples collected from patients in the Netherlands.

Nijhuis RHT, Sidorov IA, Chung PK, Wessels E, Gulyaeva AA, de Vries JJ, Claas ECJ, Gorbalenya AE.

J Clin Virol. 2018 Nov;108:83-89. doi: 10.1016/j.jcv.2018.09.007. Epub 2018 Sep 13.

2.

Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses.

Lehmann KC, Gulyaeva A, Zevenhoven-Dobbe JC, Janssen GM, Ruben M, Overkleeft HS, van Veelen PA, Samborskiy DV, Kravchenko AA, Leontovich AM, Sidorov IA, Snijder EJ, Posthuma CC, Gorbalenya AE.

Nucleic Acids Res. 2015 Sep 30;43(17):8416-34. doi: 10.1093/nar/gkv838. Epub 2015 Aug 24.

3.

Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal.

Galachyants YP, Zakharova YR, Petrova DP, Morozov AA, Sidorov IA, Marchenkov AM, Logacheva MD, Markelov ML, Khabudaev KV, Likhoshway YV, Grachev MA.

Dokl Biochem Biophys. 2015;461:84-8. doi: 10.1134/S1607672915020064. Epub 2015 May 5.

PMID:
25937221
4.

Quantitative cortical synapse proteomics of a transgenic migraine mouse model with mutated Ca(V)2.1 calcium channels.

Klychnikov OI, Li KW, Sidorov IA, Loos M, Spijker S, Broos LA, Frants RR, Ferrari MD, Mayboroda OA, Deelder AM, Smit AB, van den Maagdenberg AM.

Proteomics. 2010 Jul;10(13):2531-5. doi: 10.1002/pmic.200900733.

PMID:
20391530
5.

Practical application of bioinformatics by the multidisciplinary VIZIER consortium.

Gorbalenya AE, Lieutaud P, Harris MR, Coutard B, Canard B, Kleywegt GJ, Kravchenko AA, Samborskiy DV, Sidorov IA, Leontovich AM, Jones TA.

Antiviral Res. 2010 Aug;87(2):95-110. doi: 10.1016/j.antiviral.2010.02.005. Epub 2010 Feb 11. Review.

PMID:
20153379
6.

SNAD: Sequence Name Annotation-based Designer.

Sidorov IA, Reshetov DA, Gorbalenya AE.

BMC Bioinformatics. 2009 Aug 14;10:251. doi: 10.1186/1471-2105-10-251.

7.

Potent cross-reactive neutralization of SARS coronavirus isolates by human monoclonal antibodies.

Zhu Z, Chakraborti S, He Y, Roberts A, Sheahan T, Xiao X, Hensley LE, Prabakaran P, Rockx B, Sidorov IA, Corti D, Vogel L, Feng Y, Kim JO, Wang LF, Baric R, Lanzavecchia A, Curtis KM, Nabel GJ, Subbarao K, Jiang S, Dimitrov DS.

Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):12123-8. Epub 2007 Jul 9.

8.

Correlation between binding rate constants and individual information of E. coli Fis binding sites.

Shultzaberger RK, Roberts LR, Lyakhov IG, Sidorov IA, Stephen AG, Fisher RJ, Schneider TD.

Nucleic Acids Res. 2007;35(16):5275-83. Epub 2007 Jul 7.

9.

Cross-reactive HIV-1 neutralizing monoclonal antibodies selected by screening of an immune human phage library against an envelope glycoprotein (gp140) isolated from a patient (R2) with broadly HIV-1 neutralizing antibodies.

Choudhry V, Zhang MY, Sidorov IA, Louis JM, Harris I, Dimitrov AS, Bouma P, Cham F, Choudhary A, Rybak SM, Fouts T, Montefiori DC, Broder CC, Quinnan GV Jr, Dimitrov DS.

Virology. 2007 Jun 20;363(1):79-90. Epub 2007 Feb 15. Erratum in: Virology. 2007 Nov 25;368(2):431.

10.

Selection of a novel gp41-specific HIV-1 neutralizing human antibody by competitive antigen panning.

Zhang MY, Choudhry V, Sidorov IA, Tenev V, Vu BK, Choudhary A, Lu H, Stiegler GM, Katinger HW, Jiang S, Broder CC, Dimitrov DS.

J Immunol Methods. 2006 Dec 20;317(1-2):21-30. Epub 2006 Oct 16.

11.

Increased efficacy of HIV-1 neutralization by antibodies at low CCR5 surface concentration.

Choudhry V, Zhang MY, Harris I, Sidorov IA, Vu B, Dimitrov AS, Fouts T, Dimitrov DS.

Biochem Biophys Res Commun. 2006 Sep 29;348(3):1107-15. Epub 2006 Aug 4.

12.

A probability model predicting initiation efficiency of retroviral vectors with two primer-binding sites.

Voronin YA, Sidorov IA, Pathak VK.

J Theor Biol. 2006 Sep 21;242(2):347-55. Epub 2006 Apr 24.

PMID:
16631208
13.

Transcriptomic response to differentiation induction.

Patton GW, Stephens R, Sidorov IA, Xiao X, Lempicki RA, Dimitrov DS, Shoemaker RH, Tudor G.

BMC Bioinformatics. 2006 Feb 17;7:81.

14.

Naïve T-cell dynamics in human immunodeficiency virus type 1 infection: effects of highly active antiretroviral therapy provide insights into the mechanisms of naive T-cell depletion.

Di Mascio M, Sereti I, Matthews LT, Natarajan V, Adelsberger J, Lempicki R, Yoder C, Jones E, Chow C, Metcalf JA, Sidorov IA, Dimitrov DS, Polis MA, Kovacs JA.

J Virol. 2006 Mar;80(6):2665-74.

15.

Energy cost of infection burden: an approach to understanding the dynamics of host-pathogen interactions.

Romanyukha AA, Rudnev SG, Sidorov IA.

J Theor Biol. 2006 Jul 7;241(1):1-13. Epub 2005 Dec 27.

PMID:
16378624
16.

Limiting dilution analysis of interleukin-2 producing helper T-cell frequencies as a tool in allogeneic hematopoietic cell transplantation.

Petersen SL, Sidorov IA, Russell CA, Dickmeiss E, Vindeløv LL.

Transplantation. 2005 Sep 15;80(5):573-81.

PMID:
16177628
17.

Retinoic acid-induced downmodulation of telomerase activity in human cancer cells.

Xiao X, Sidorov IA, Gee J, Lempicki RA, Dimitrov DS.

Exp Mol Pathol. 2005 Oct;79(2):108-17.

PMID:
16054129
18.

Induction of prolonged survival of CD4+ T lymphocytes by intermittent IL-2 therapy in HIV-infected patients.

Kovacs JA, Lempicki RA, Sidorov IA, Adelsberger JW, Sereti I, Sachau W, Kelly G, Metcalf JA, Davey RT Jr, Falloon J, Polis MA, Tavel J, Stevens R, Lambert L, Hosack DA, Bosche M, Issaq HJ, Fox SD, Leitman S, Baseler MW, Masur H, Di Mascio M, Dimitrov DS, Lane HC.

J Clin Invest. 2005 Aug;115(8):2139-48. Epub 2005 Jul 14.

19.

Identification and characterization of a new cross-reactive human immunodeficiency virus type 1-neutralizing human monoclonal antibody.

Zhang MY, Xiao X, Sidorov IA, Choudhry V, Cham F, Zhang PF, Bouma P, Zwick M, Choudhary A, Montefiori DC, Broder CC, Burton DR, Quinnan GV Jr, Dimitrov DS.

J Virol. 2004 Sep;78(17):9233-42.

20.

A kinetic model of telomere shortening in infants and adults.

Sidorov IA, Gee D, Dimitrov DS.

J Theor Biol. 2004 Jan 21;226(2):169-75.

PMID:
14643186
21.

Role of Ets/Id proteins for telomerase regulation in human cancer cells.

Xiao X, Athanasiou M, Sidorov IA, Horikawa I, Cremona G, Blair D, Barret JC, Dimitrov DS.

Exp Mol Pathol. 2003 Dec;75(3):238-47.

PMID:
14611815
22.
24.

Cancer treatment by telomerase inhibitors: predictions by a kinetic model.

Sidorov IA, Hirsch KS, Harley CB, Dimitrov DS.

Math Biosci. 2003 Feb;181(2):209-21.

PMID:
12445762
25.

Cancer cell dynamics in presence of telomerase inhibitors: analysis of in vitro data.

Sidorov IA, Hirsch KS, Harley CB, Dimitrov DS.

J Theor Biol. 2002 Nov 21;219(2):225-33.

PMID:
12413877
26.

Identification and characterization of rapidly dividing U937 clones with differential telomerase activity and gene expression profiles: role of c-Myc/Mad1 and Id/Ets proteins.

Xiao X, Phogat SK, Sidorov IA, Yang J, Horikawa I, Prieto D, Adelesberger J, Lempicki R, Barrett JC, Dimitrov DS.

Leukemia. 2002 Sep;16(9):1877-80. No abstract available.

27.

Conserved structures exposed in HIV-1 envelope glycoproteins stabilized by flexible linkers as potent entry inhibitors and potential immunogens.

Chow YH, Wei OL, Phogat S, Sidorov IA, Fouts TR, Broder CC, Dimitrov DS.

Biochemistry. 2002 Jun 4;41(22):7176-82.

PMID:
12033952
28.

Estimation of cyclodextrin affinity to steroids.

Khomutov SM, Sidorov IA, Dovbnya DV, Donova MV.

J Pharm Pharmacol. 2002 May;54(5):617-22.

PMID:
12005356
29.

Broadly cross-reactive HIV-1-neutralizing human monoclonal Fab selected for binding to gp120-CD4-CCR5 complexes.

Moulard M, Phogat SK, Shu Y, Labrijn AF, Xiao X, Binley JM, Zhang MY, Sidorov IA, Broder CC, Robinson J, Parren PW, Burton DR, Dimitrov DS.

Proc Natl Acad Sci U S A. 2002 May 14;99(10):6913-8. Epub 2002 May 7.

30.

Identification of dynamically distinct subpopulations of T lymphocytes that are differentially affected by HIV.

Kovacs JA, Lempicki RA, Sidorov IA, Adelsberger JW, Herpin B, Metcalf JA, Sereti I, Polis MA, Davey RT, Tavel J, Falloon J, Stevens R, Lambert L, Dewar R, Schwartzentruber DJ, Anver MR, Baseler MW, Masur H, Dimitrov DS, Lane HC.

J Exp Med. 2001 Dec 17;194(12):1731-41.

31.

Correlation between reduction in plasma HIV-1 RNA concentration 1 week after start of antiretroviral treatment and longer-term efficacy.

Polis MA, Sidorov IA, Yoder C, Jankelevich S, Metcalf J, Mueller BU, Dimitrov MA, Pizzo P, Yarchoan R, Dimitrov DS.

Lancet. 2001 Nov 24;358(9295):1760-5.

PMID:
11734232
32.

Mathematical modeling of citric acid production by repeated batch culture.

Arzumanov TE, Sidorov IA, Shishkanova NV, Finogenova TV.

Enzyme Microb Technol. 2000 Jun 1;26(9-10):826-833.

PMID:
10862892
33.

Hydrolysis of tripolyphosphate by purified exopolyphosphatase from Saccharomyces cerevisiae cytosol: kinetic model.

Kulakovskaya TV, Andreeva NA, Karpov AV, Sidorov IA, Kulaev IS.

Biochemistry (Mosc). 1999 Sep;64(9):990-3.

PMID:
10521714
34.

[Risk factors and some pathological features in relation to the type of brain neurodynamic pattern].

Vasilevskii NN, Suvorov NB, Sidorov IA, Bavtiushko VG.

Vestn Ross Akad Med Nauk. 1996;(9):14-8. Review. Russian. No abstract available.

PMID:
8983402
35.

Antagonistic interactions among T cell subsets of old mice revealed by limiting dilution analysis.

Dozmorov IM, Kalinichenko VV, Sidorov IA, Miller RA.

J Immunol. 1995 May 1;154(9):4283-93.

PMID:
7722287
36.

Mathematical modeling of T-cell proliferation.

Sidorov IA, Romanyukha AA.

Math Biosci. 1993 Jun;115(2):187-232.

PMID:
8507990
37.

Quantitative analysis of interleukin-2-induced proliferation in the presence of inhibitors using a mathematical model.

Svirshchevskaya EV, Sidorov IA, Viskova NY, Dozmorov IM.

J Immunol Methods. 1993 Feb 26;159(1-2):17-27.

PMID:
8445249
38.

[Successful treatment of complicated chemical burns of the esophagus and stomach].

Alekseev VS, Ivanov VM, Troshkin VN, Boĭkov VP, Sidorov IA.

Khirurgiia (Mosk). 1990 Mar;(3):100. Russian. No abstract available.

PMID:
2359229
39.

[Characteristics of diagnostic and therapeutic endoscopy in foreign bodies of the upper part of the digestive tract].

Troshkin VN, Sidorov IA, Boĭkov VP, Batrakov SN.

Vestn Khir Im I I Grek. 1989 Sep;143(9):114-6. Russian. No abstract available.

PMID:
2617764
40.

[Relationship of the pKMR plasmids detected in Shigella circulating in the Krasnodar Territory to incompatibility groups].

Shishkina ZV, Sidorov IA, Korotiaev AI.

Antibiot Med Biotekhnol. 1986 Aug;31(8):600-2. Russian.

PMID:
2945511
41.

[Characteristics of R plasmids expressed by dysenteric bacteria].

Shishkina ZV, Sidorov IA, Korotiaev AI.

Antibiot Med Biotekhnol. 1985 May;30(5):348-51. Russian.

PMID:
3161452
42.
43.

[Effect of adeturon on the survival and the blood system of mice under the effect of ionizing radiation of different types].

Gvozdeva NI, Chertkov KS, Nikolov I, Sbitneva MF, Sidorov IA.

Radiobiologiia. 1982 Sep-Oct;22(5):614-8. Russian. No abstract available.

PMID:
6294724
44.

[Characteristics of the pKMR plasmids found in Shigella flexneri].

Korotiaev AI, Sidorov IA.

Zh Mikrobiol Epidemiol Immunobiol. 1982 May;(5):41-3. Russian.

PMID:
6285647
45.

[Physicochemical characteristics of transfer derepressed pKMR plasmids].

Sidorov IA, Korotiaev AI, Bogush VG.

Antibiotiki. 1981 Dec;26(12):886-90. Russian.

PMID:
7034638
46.

[Group of derepressed pKMR plasmids found in wild strains of Shigella].

Sidorov IA.

Antibiotiki. 1981 Sep;26(9):680-3. Russian.

PMID:
7027918
47.

[Effect of radiation of splenic and liver nuclei on the incorporation of C 14 -labelled amino acids into total protein].

Blochina VD, Romancev EF, Sidorov IA, Rogozkin VD.

Radiobiol Radiother (Berl). 1972;13(5):557-63. German. No abstract available.

PMID:
4649611

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