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Items: 1 to 50 of 65

1.

An analysis of beamforming algorithms for passive bottom reflection-loss estimation.

Muzi L, Siderius M, Gebbie J.

J Acoust Soc Am. 2018 Nov;144(5):3046. doi: 10.1121/1.5080258.

PMID:
30522322
2.

The constitutive activity of the virally encoded chemokine receptor US28 accelerates glioblastoma growth.

Heukers R, Fan TS, de Wit RH, van Senten JR, De Groof TWM, Bebelman MP, Lagerweij T, Vieira J, de Munnik SM, Smits-de Vries L, van Offenbeek J, Rahbar A, van Hoorick D, Söderberg-Naucler C, Würdinger T, Leurs R, Siderius M, Vischer HF, Smit MJ.

Oncogene. 2018 Jul;37(30):4110-4121. doi: 10.1038/s41388-018-0255-7. Epub 2018 Apr 30.

3.

Targeting a Subpocket in Trypanosoma brucei Phosphodiesterase B1 (TbrPDEB1) Enables the Structure-Based Discovery of Selective Inhibitors with Trypanocidal Activity.

Blaazer AR, Singh AK, de Heuvel E, Edink E, Orrling KM, Veerman JJN, van den Bergh T, Jansen C, Balasubramaniam E, Mooij WJ, Custers H, Sijm M, Tagoe DNA, Kalejaiye TD, Munday JC, Tenor H, Matheeussen A, Wijtmans M, Siderius M, de Graaf C, Maes L, de Koning HP, Bailey DS, Sterk GJ, de Esch IJP, Brown DG, Leurs R.

J Med Chem. 2018 May 10;61(9):3870-3888. doi: 10.1021/acs.jmedchem.7b01670. Epub 2018 May 1.

4.

Head waves in ocean acoustic ambient noise: Measurements and modeling.

Siderius M, Li J, Gerstoft P.

J Acoust Soc Am. 2018 Feb;143(2):1182. doi: 10.1121/1.5024332.

PMID:
29495697
5.

Mutation Sensitivity Maps: Identifying Residue Substitutions That Impact Protein Structure Via a Rigidity Analysis In Silico Mutation Approach.

Siderius M, Jagodzinski F.

J Comput Biol. 2018 Jan;25(1):89-102. doi: 10.1089/cmb.2017.0165. Epub 2017 Oct 16.

PMID:
29035580
6.

Passive bottom reflection-loss estimation using ship noise and a vertical line array.

Muzi L, Siderius M, Verlinden CM.

J Acoust Soc Am. 2017 Jun;141(6):4372. doi: 10.1121/1.4985122.

PMID:
28618818
7.

Frequency based noise coherence-function extension and application to passive bottom-loss estimation.

Muzi L, Siderius M, Nielsen PL.

J Acoust Soc Am. 2016 Sep;140(3):1513.

PMID:
27914391
8.

Single-sensor, cue-counting population density estimation: Average probability of detection of broadband clicks.

Küsel ET, Siderius M, Mellinger DK.

J Acoust Soc Am. 2016 Sep;140(3):1894.

PMID:
27914386
9.

Human cytomegalovirus encoded chemokine receptor US28 activates the HIF-1α/PKM2 axis in glioblastoma cells.

de Wit RH, Mujić-Delić A, van Senten JR, Fraile-Ramos A, Siderius M, Smit MJ.

Oncotarget. 2016 Oct 18;7(42):67966-67985. doi: 10.18632/oncotarget.11817.

10.

Head wave correlations in ambient noise.

Gebbie J, Siderius M.

J Acoust Soc Am. 2016 Jul;140(1):EL62. doi: 10.1121/1.4954897.

PMID:
27475213
11.

Surface plasmon resonance biosensor assay for the analysis of small-molecule inhibitor binding to human and parasitic phosphodiesterases.

Siderius M, Shanmugham A, England P, van der Meer T, Bebelman JP, Blaazer AR, de Esch IJ, Leurs R.

Anal Biochem. 2016 Jun 15;503:41-9. doi: 10.1016/j.ab.2016.03.013. Epub 2016 Mar 28.

PMID:
27033007
12.

Performance metrics for depth-based signal separation using deep vertical line arrays.

Kniffin GP, Boyle JK, Zurk LM, Siderius M.

J Acoust Soc Am. 2016 Jan;139(1):418-25. doi: 10.1121/1.4939740.

PMID:
26827036
13.

A computational method to predict and study underwater noise due to pile driving.

Schecklman S, Laws N, Zurk LM, Siderius M.

J Acoust Soc Am. 2015 Jul;138(1):258-66. doi: 10.1121/1.4922333.

PMID:
26233025
14.

A two-hydrophone range and bearing localization algorithm with performance analysis.

Gebbie J, Siderius M, Allen JS 3rd.

J Acoust Soc Am. 2015 Mar;137(3):1586-97. doi: 10.1121/1.4906835.

PMID:
25786969
15.

High-resolution bottom-loss estimation using the ambient-noise vertical coherence function.

Muzi L, Siderius M, Quijano JE, Dosso SE.

J Acoust Soc Am. 2015 Jan;137(1):481-91. doi: 10.1121/1.4904508.

PMID:
25618076
16.

The CXCR3-CXCL11 signaling axis mediates macrophage recruitment and dissemination of mycobacterial infection.

Torraca V, Cui C, Boland R, Bebelman JP, van der Sar AM, Smit MJ, Siderius M, Spaink HP, Meijer AH.

Dis Model Mech. 2015 Mar;8(3):253-69. doi: 10.1242/dmm.017756. Epub 2015 Jan 8.

17.

Geoacoustic inversion of ship radiated noise in shallow water using data from a single hydrophone.

Crocker SE, Nielsen PL, Miller JH, Siderius M.

J Acoust Soc Am. 2014 Nov;136(5):EL362-8. doi: 10.1121/1.4898739.

PMID:
25373994
18.

Fragment-based screening in tandem with phenotypic screening provides novel antiparasitic hits.

Blaazer AR, Orrling KM, Shanmugham A, Jansen C, Maes L, Edink E, Sterk GJ, Siderius M, England P, Bailey D, de Esch IJ, Leurs R.

J Biomol Screen. 2015 Jan;20(1):131-40. doi: 10.1177/1087057114549735. Epub 2014 Sep 17.

PMID:
25231971
19.

eXamine: exploring annotated modules in networks.

Dinkla K, El-Kebir M, Bucur CI, Siderius M, Smit MJ, Westenberg MA, Klau GW.

BMC Bioinformatics. 2014 Jul 10;15:201. doi: 10.1186/1471-2105-15-201.

20.

Passive localization of noise-producing targets using a compact volumetric array.

Gebbie J, Siderius M, Nielsen PL, Miller J.

J Acoust Soc Am. 2014 Jul;136(1):80-9. doi: 10.1121/1.4881917.

PMID:
24993197
21.

Coherence extrapolation for underwater ambient noise.

Quijano JE, Dosso SE, Siderius M, Muzi L.

J Acoust Soc Am. 2014 Jun;135(6):EL318-23. doi: 10.1121/1.4879663.

PMID:
24907840
22.

Cdc37 engages in stable, S14A mutation-reinforced association with the most atypical member of the yeast kinome, Cdk-activating kinase (Cak1).

Millson S, van Oosten-Hawle P, Alkuriji MA, Truman A, Siderius M, Piper PW.

Cell Stress Chaperones. 2014 Sep;19(5):695-703. doi: 10.1007/s12192-014-0497-4. Epub 2014 Jan 23.

23.

Herpesvirus-encoded GPCRs: neglected players in inflammatory and proliferative diseases?

Vischer HF, Siderius M, Leurs R, Smit MJ.

Nat Rev Drug Discov. 2014 Feb;13(2):123-39. doi: 10.1038/nrd4189. Epub 2014 Jan 21. Review.

PMID:
24445563
24.

Localization of a noisy broadband surface target using time differences of multipath arrivals.

Gebbie J, Siderius M, McCargar R, Allen JS 3rd, Pusey G.

J Acoust Soc Am. 2013 Jul;134(1):EL77-83. doi: 10.1121/1.4809771.

PMID:
23862911
25.

Synthetic array processing of ocean ambient noise for higher resolution seabed bottom loss estimation.

Siderius M, Muzi L, Harrison CH, Nielsen PL.

J Acoust Soc Am. 2013 Mar;133(3):EL149-55. doi: 10.1121/1.4774074.

PMID:
23464121
26.

Trans-dimensional geoacoustic inversion of wind-driven ambient noise.

Quijano JE, Dosso SE, Dettmer J, Zurk LM, Siderius M.

J Acoust Soc Am. 2013 Jan;133(1):EL47-53. doi: 10.1121/1.4771975.

PMID:
23298017
27.

Identification and profiling of CXCR3-CXCR4 chemokine receptor heteromer complexes.

Watts AO, van Lipzig MM, Jaeger WC, Seeber RM, van Zwam M, Vinet J, van der Lee MM, Siderius M, Zaman GJ, Boddeke HW, Smit MJ, Pfleger KD, Leurs R, Vischer HF.

Br J Pharmacol. 2013 Apr;168(7):1662-74. doi: 10.1111/bph.12064.

28.

Aspect-dependent radiated noise analysis of an underway autonomous underwater vehicle.

Gebbie J, Siderius M, Allen JS 3rd.

J Acoust Soc Am. 2012 Nov;132(5):EL351-7. doi: 10.1121/1.4754419.

PMID:
23145694
29.

Constitutive β-catenin signaling by the viral chemokine receptor US28.

Langemeijer EV, Slinger E, de Munnik S, Schreiber A, Maussang D, Vischer H, Verkaar F, Leurs R, Siderius M, Smit MJ.

PLoS One. 2012;7(11):e48935. doi: 10.1371/journal.pone.0048935. Epub 2012 Nov 8.

30.

Dynamic tyrosine phosphorylation modulates cycling of the HSP90-P50(CDC37)-AHA1 chaperone machine.

Xu W, Mollapour M, Prodromou C, Wang S, Scroggins BT, Palchick Z, Beebe K, Siderius M, Lee MJ, Couvillon A, Trepel JB, Miyata Y, Matts R, Neckers L.

Mol Cell. 2012 Aug 10;47(3):434-43. doi: 10.1016/j.molcel.2012.05.015. Epub 2012 Jun 21.

31.

Bayesian geoacoustic inversion using wind-driven ambient noise.

Quijano JE, Dosso SE, Dettmer J, Zurk LM, Siderius M, Harrison CH.

J Acoust Soc Am. 2012 Apr;131(4):2658-67. doi: 10.1121/1.3688482.

PMID:
22501046
32.

Using practical supergain for passive imaging with noise.

Siderius M.

J Acoust Soc Am. 2012 Jan;131(1):EL14-20. doi: 10.1121/1.3663282.

PMID:
22280724
33.

The ESME workbench: simulating the impact of anthropogenic sound on marine mammals.

Mountain DC, Anderson D, Brughera A, Cross M, Houser DS, Musleh N, Porter M, Siderius M.

Adv Exp Med Biol. 2012;730:217-9. doi: 10.1007/978-1-4419-7311-5_48. No abstract available.

PMID:
22278485
34.

Comparison of methods used for computing the impact of sound on the marine environment.

Schecklman S, Houser D, Cross M, Hernandez D, Siderius M.

Mar Environ Res. 2011 Jun;71(5):342-50. doi: 10.1016/j.marenvres.2011.03.002. Epub 2011 Apr 7.

PMID:
21531454
35.

Quantitative expression profiling of G-protein-coupled receptors (GPCRs) in metastatic melanoma: the constitutively active orphan GPCR GPR18 as novel drug target.

Qin Y, Verdegaal EM, Siderius M, Bebelman JP, Smit MJ, Leurs R, Willemze R, Tensen CP, Osanto S.

Pigment Cell Melanoma Res. 2011 Feb;24(1):207-18. doi: 10.1111/j.1755-148X.2010.00781.x. Epub 2010 Oct 21.

PMID:
20880198
36.

Metabolic regulation rather than de novo enzyme synthesis dominates the osmo-adaptation of yeast.

Bouwman J, Kiewiet J, Lindenbergh A, van Eunen K, Siderius M, Bakker BM.

Yeast. 2011 Jan;28(1):43-53. doi: 10.1002/yea.1819. Epub 2010 Aug 27.

37.

HCMV-encoded chemokine receptor US28 mediates proliferative signaling through the IL-6-STAT3 axis.

Slinger E, Maussang D, Schreiber A, Siderius M, Rahbar A, Fraile-Ramos A, Lira SA, Söderberg-Nauclér C, Smit MJ.

Sci Signal. 2010 Aug 3;3(133):ra58. doi: 10.1126/scisignal.2001180.

38.

Herpesvirus-encoded GPCRs rewire cellular signaling.

Slinger E, Langemeijer E, Siderius M, Vischer HF, Smit MJ.

Mol Cell Endocrinol. 2011 Jan 15;331(2):179-84. doi: 10.1016/j.mce.2010.04.007. Epub 2010 Apr 14. Review.

PMID:
20398729
39.

Adaptive passive fathometer processing.

Siderius M, Song H, Gerstoft P, Hodgkiss WS, Hursky P, Harrison C.

J Acoust Soc Am. 2010 Apr;127(4):2193-200. doi: 10.1121/1.3303985.

PMID:
20370000
40.

Effects of sea-surface conditions on passive fathometry and bottom characterization.

Means SL, Siderius M.

J Acoust Soc Am. 2009 Nov;126(5):2234-41. doi: 10.1121/1.3216915.

PMID:
19894804
41.

Modeling broadband ocean acoustic transmissions with time-varying sea surfaces.

Siderius M, Porter MB.

J Acoust Soc Am. 2008 Jul;124(1):137-50. doi: 10.1121/1.2920959.

PMID:
18646961
42.

Passive fathometer processing.

Gerstoft P, Hodgkiss WS, Siderius M, Huang CF, Harrison CH.

J Acoust Soc Am. 2008 Mar;123(3):1297-305. doi: 10.1121/1.2831930.

PMID:
18345818
43.

Bottom profiling by correlating beam-steered noise sequences.

Harrison CH, Siderius M.

J Acoust Soc Am. 2008 Mar;123(3):1282-96. doi: 10.1121/1.2835416.

PMID:
18345817
44.

Effects of ocean thermocline variability on noncoherent underwater acoustic communications.

Siderius M, Porter MB, Hursky P, McDonald V; KauaiEx Group.

J Acoust Soc Am. 2007 Apr;121(4):1895-908.

PMID:
17471705
45.

Cdc37p is involved in osmoadaptation and controls high osmolarity-induced cross-talk via the MAP kinase Kss1p.

Yang XX, Hawle P, Bebelman JP, Meenhuis A, Siderius M, van der Vies SM.

FEMS Yeast Res. 2007 Sep;7(6):796-807. Epub 2007 Apr 20.

46.

Thermosensitivity of the Saccharomyces cerevisiae gpp1gpp2 double deletion strain can be reduced by overexpression of genes involved in cell wall maintenance.

Wojda I, Bebelman JP, Jakubowicz T, Siderius M.

Arch Microbiol. 2007 Aug;188(2):175-84. Epub 2007 Mar 28.

PMID:
17390123
47.
48.

The middle domain of Hsp90 acts as a discriminator between different types of client proteins.

Hawle P, Siepmann M, Harst A, Siderius M, Reusch HP, Obermann WM.

Mol Cell Biol. 2006 Nov;26(22):8385-95. Epub 2006 Sep 18.

49.

The molecular chaperone Hsp90 is required for high osmotic stress response in Saccharomyces cerevisiae.

Yang XX, Maurer KC, Molanus M, Mager WH, Siderius M, van der Vies SM.

FEMS Yeast Res. 2006 Mar;6(2):195-204.

50.

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