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Items: 1 to 50 of 134

1.

Exploratory Data Mining for Subgroup Cohort Discoveries and Prioritization.

Liu D, Baskett W, Beversdorf D, Shyu CR.

IEEE J Biomed Health Inform. 2019 Sep 5. doi: 10.1109/JBHI.2019.2939149. [Epub ahead of print]

PMID:
31494566
2.

Medical calculators: Prevalence, and barriers to use.

Green TA, Whitt S, Belden JL, Erdelez S, Shyu CR.

Comput Methods Programs Biomed. 2019 Oct;179:105002. doi: 10.1016/j.cmpb.2019.105002. Epub 2019 Jul 30.

PMID:
31443857
3.

Developing a Taxonomy of Online Medical Calculators for Assessing Automatability and Clinical Efficiency Improvements.

Green TA, Shyu CR.

Stud Health Technol Inform. 2019 Aug 21;264:601-605. doi: 10.3233/SHTI190293.

PMID:
31437994
4.

Advancing health equity and access using telemedicine: a geospatial assessment.

Khairat S, Haithcoat T, Liu S, Zaman T, Edson B, Gianforcaro R, Shyu CR.

J Am Med Inform Assoc. 2019 Aug 1;26(8-9):796-805. doi: 10.1093/jamia/ocz108.

PMID:
31340022
5.

Investigating the Impact of Intensive Care Unit Interruptions on Patient Safety Events and Electronic Health Records Use: An Observational Study.

Khairat S, Whitt S, Craven CK, Pak Y, Shyu CR, Gong Y.

J Patient Saf. 2019 Apr 23. doi: 10.1097/PTS.0000000000000603. [Epub ahead of print]

PMID:
31287808
6.

Applying Blockchain Technology for Health Information Exchange and Persistent Monitoring for Clinical Trials.

Zhuang Y, Sheets L, Shae Z, Tsai JJP, Shyu CR.

AMIA Annu Symp Proc. 2018 Dec 5;2018:1167-1175. eCollection 2018.

7.

CNS-derived extracellular vesicles from superoxide dismutase 1 (SOD1)G93A ALS mice originate from astrocytes and neurons and carry misfolded SOD1.

Silverman JM, Christy D, Shyu CC, Moon KM, Fernando S, Gidden Z, Cowan CM, Ban Y, Stacey RG, Grad LI, McAlary L, Mackenzie IR, Foster LJ, Cashman NR.

J Biol Chem. 2019 Mar 8;294(10):3744-3759. doi: 10.1074/jbc.RA118.004825. Epub 2019 Jan 11.

PMID:
30635404
8.

Contrast Mining for Pattern Discovery and Descriptive Analytics to Tailor Sub-Groups of Patients Using Big Data Solutions.

Phinney MA, Zhuang Y, Lander S, Sheets L, Parker JC, Shyu CR.

Stud Health Technol Inform. 2017;245:544-548.

PMID:
29295154
9.

Heritable genotype contrast mining reveals novel gene associations specific to autism subgroups.

Spencer M, Takahashi N, Chakraborty S, Miles J, Shyu CR.

J Biomed Inform. 2018 Jan;77:50-61. doi: 10.1016/j.jbi.2017.11.016. Epub 2017 Nov 29.

10.

Setaria Comes of Age: Meeting Report on the Second International Setaria Genetics Conference.

Zhu C, Yang J, Shyu C.

Front Plant Sci. 2017 Sep 28;8:1562. doi: 10.3389/fpls.2017.01562. eCollection 2017.

11.

PathEdEx - Uncovering High-explanatory Visual Diagnostics Heuristics Using Digital Pathology and Multiscale Gaze Data.

Shin D, Kovalenko M, Ersoy I, Li Y, Doll D, Shyu CR, Hammer R.

J Pathol Inform. 2017 Jul 25;8:29. doi: 10.4103/jpi.jpi_29_17. eCollection 2017.

12.

Combining Contrast Mining with Logistic Regression To Predict Healthcare Utilization in a Managed Care Population.

Sheets L, Petroski GF, Zhuang Y, Phinney MA, Ge B, Parker JC, Shyu CR.

Appl Clin Inform. 2017 May 3;8(2):430-446. doi: 10.4338/ACI-2016-05-RA-0078.

13.

Setaria viridis as a Model System to Advance Millet Genetics and Genomics.

Huang P, Shyu C, Coelho CP, Cao Y, Brutnell TP.

Front Plant Sci. 2016 Nov 28;7:1781. eCollection 2016. Review.

14.

Unwinding JAZ7 - enigma to harmony.

Shyu C.

J Exp Bot. 2016 May;67(11):3183-5. doi: 10.1093/jxb/erw191. No abstract available.

15.

Emphysematous pyometra secondary to Enterococcus avium infection in a dog.

Chang AC, Cheng CC, Wang HC, Lee WM, Shyu CL, Lin CC, Chen KS.

Tierarztl Prax Ausg K Kleintiere Heimtiere. 2016 Jun 16;44(3):195-9. doi: 10.15654/TPK-150214. Epub 2016 Apr 25.

PMID:
27111397
16.

DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.

Kuang X, Dhroso A, Han JG, Shyu CR, Korkin D.

Database (Oxford). 2016 Jan 30;2016. pii: bav114. doi: 10.1093/database/bav114. Print 2016.

17.

Antibacterial and Synergistic Activity of Pentacyclic Triterpenoids Isolated from Alstonia scholaris.

Wang CM, Chen HT, Wu ZY, Jhan YL, Shyu CL, Chou CH.

Molecules. 2016 Jan 25;21(2):139. doi: 10.3390/molecules21020139.

18.

Detection of Simulated Vocal Dysfunctions Using Complex sEMG Patterns.

Smith NR, Rivera LA, Dietrich M, Shyu CR, Page MP, DeSouza GN.

IEEE J Biomed Health Inform. 2016 May;20(3):787-801. doi: 10.1109/JBHI.2015.2490087. Epub 2015 Oct 12.

PMID:
26469789
19.

Measurement Issues in Anthropometric Measures of Limb Volume Change in Persons at Risk for and Living with Lymphedema: A Reliability Study.

Tidhar D, Armer JM, Deutscher D, Shyu CR, Azuri J, Madsen R.

J Pers Med. 2015 Sep 30;5(4):341-53. doi: 10.3390/jpm5040341.

20.

An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites.

Pang B, Schlessman D, Kuang X, Zhao N, Shyu D, Korkin D, Shyu CR.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Mar-Apr;12(2):298-308. doi: 10.1109/TCBB.2014.2355208.

PMID:
26357218
21.

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria.

Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, Hill ST, McEntee CJ, Warnasooriya SN, Kumar I, Ficor T, Turnipseed S, Gilbert KB, Brutnell TP, Carrington JC, Mockler TC, Baxter I.

Mol Plant. 2015 Oct 5;8(10):1520-35. doi: 10.1016/j.molp.2015.06.005. Epub 2015 Jun 20.

22.

PubMed-supported clinical term weighting approach for improving inter-patient similarity measure in diagnosis prediction.

Chan LW, Liu Y, Chan T, Law HK, Wong SCC, Yeung AP, Lo KF, Yeung SW, Kwok KY, Chan WY, Lau TY, Shyu CR.

BMC Med Inform Decis Mak. 2015 Jun 2;15:43. doi: 10.1186/s12911-015-0166-2.

23.

Genetic algorithm supported by graphical processing unit improves the exploration of effective connectivity in functional brain imaging.

Chan LW, Pang B, Shyu CR, Chan T, Khong PL.

Front Comput Neurosci. 2015 May 5;9:50. doi: 10.3389/fncom.2015.00050. eCollection 2015.

24.

Repression of jasmonate signaling by a non-TIFY JAZ protein in Arabidopsis.

Thireault C, Shyu C, Yoshida Y, St Aubin B, Campos ML, Howe GA.

Plant J. 2015 May;82(4):669-79. doi: 10.1111/tpj.12841.

25.

Growth-defence balance in grass biomass production: the role of jasmonates.

Shyu C, Brutnell TP.

J Exp Bot. 2015 Jul;66(14):4165-76. doi: 10.1093/jxb/erv011. Epub 2015 Feb 22. Review.

PMID:
25711704
26.

Complete Genome Sequence of Campylobacter fetus subsp. testudinum Strain Pet-3, Isolated from a Lizard (Hydrosaurus pustulatus).

Wang CM, Wu ZY, Shia WY, Jhou YJ, Tung KC, Shyu CL.

Genome Announc. 2015 Feb 19;3(1). pii: e01420-14. doi: 10.1128/genomeA.01420-14.

27.

A sorghum MYB transcription factor induces 3-deoxyanthocyanidins and enhances resistance against leaf blights in maize.

Ibraheem F, Gaffoor I, Tan Q, Shyu CR, Chopra S.

Molecules. 2015 Jan 30;20(2):2388-404. doi: 10.3390/molecules20022388.

28.

Identifying key variables in African American adherence to colorectal cancer screening: the application of data mining.

Thompson VL, Lander S, Xu S, Shyu CR.

BMC Public Health. 2014 Nov 18;14:1173. doi: 10.1186/1471-2458-14-1173.

29.

Exploring microRNA-mediated alteration of EGFR signaling pathway in non-small cell lung cancer using an mRNA:miRNA regression model supported by target prediction databases.

Wang F, Chan LW, Law HK, Cho WC, Tang P, Yu J, Shyu CR, Wong SC, Yip SP, Yung BY.

Genomics. 2014 Dec;104(6 Pt B):504-11. doi: 10.1016/j.ygeno.2014.09.004. Epub 2014 Sep 22.

30.

Interaction of omeprazole and Helicobacter pylori-induced nuclear factor-κB activation and mediators in gastric epithelial cells.

Peng YC, Huang LR, Shyu CL, Cheng CC, Ho SP.

J Chin Med Assoc. 2014 Nov;77(11):567-72. doi: 10.1016/j.jcma.2014.07.006. Epub 2014 Sep 7.

31.

A neotropical Miocene pollen database employing image-based search and semantic modeling.

Han JG, Cao H, Barb A, Punyasena SW, Jaramillo C, Shyu CR.

Appl Plant Sci. 2014 Aug 18;2(8). pii: apps.1400030. doi: 10.3732/apps.1400030. eCollection 2014 Aug.

32.

Novel approach for coexpression analysis of E2F1-3 and MYC target genes in chronic myelogenous leukemia.

Wang F, Chan LW, Cho WC, Tang P, Yu J, Shyu CR, Tsui NB, Wong SC, Siu PM, Yip SP, Yung BY.

Biomed Res Int. 2014;2014:439840. doi: 10.1155/2014/439840. Epub 2014 Aug 10.

33.

Uncovering influence links in molecular knowledge networks to streamline personalized medicine.

Shin D, Arthur G, Popescu M, Korkin D, Shyu CR.

J Biomed Inform. 2014 Dec;52:394-405. doi: 10.1016/j.jbi.2014.08.003. Epub 2014 Aug 19.

34.

Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning.

Zhao N, Han JG, Shyu CR, Korkin D.

PLoS Comput Biol. 2014 May 1;10(5):e1003592. doi: 10.1371/journal.pcbi.1003592. eCollection 2014 May.

35.

Histological quantitation of brain injury using whole slide imaging: a pilot validation study in mice.

Chen Z, Shin D, Chen S, Mikhail K, Hadass O, Tomlison BN, Korkin D, Shyu CR, Cui J, Anthony DC, Gu Z.

PLoS One. 2014 Mar 17;9(3):e92133. doi: 10.1371/journal.pone.0092133. eCollection 2014.

36.

Antimicrobial resistance to cefotaxime and ertapenem in Enterobacteriaceae: the effects of altering clinical breakpoints.

Liu PY, Shi ZY, Tung KC, Shyu CL, Chan KW, Liu JW, Wu ZY, Kao CC, Huang YC, Lin CF.

J Infect Dev Ctries. 2014 Mar 13;8(3):289-96. doi: 10.3855/jidc.3335.

37.

Cobra bite wound infection caused by Shewanella algae.

Liu PY, Shi ZY, Shyu CL, Wu ZY, Lai KL, Chang CY, Chen YJ, Huang JA, Mao YC, Tung KC.

Int J Infect Dis. 2014 Mar;20:11-2. doi: 10.1016/j.ijid.2013.08.014. Epub 2013 Oct 2.

38.

Synergistic antibacterial efficacies of the combination of bovine lactoferrin or its hydrolysate with probiotic secretion in curbing the growth of meticillin-resistant Staphylococcus aureus.

Chen PW, Jheng TT, Shyu CL, Mao FC.

J Med Microbiol. 2013 Dec;62(Pt 12):1845-51. doi: 10.1099/jmm.0.052639-0. Epub 2013 Sep 26.

PMID:
24072764
39.

Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.

Moreno JE, Shyu C, Campos ML, Patel LC, Chung HS, Yao J, He SY, Howe GA.

Plant Physiol. 2013 Jun;162(2):1006-17. doi: 10.1104/pp.113.218164. Epub 2013 Apr 30.

40.

Arabidopsis homeodomain-leucine zipper IV proteins promote stomatal development and ectopically induce stomata beyond the epidermis.

Peterson KM, Shyu C, Burr CA, Horst RJ, Kanaoka MM, Omae M, Sato Y, Torii KU.

Development. 2013 May;140(9):1924-35. doi: 10.1242/dev.090209. Epub 2013 Mar 20.

41.

Occurrence and molecular characterization of reptilian Campylobacter fetus strains isolated in Taiwan.

Wang CM, Shia WY, Jhou YJ, Shyu CL.

Vet Microbiol. 2013 May 31;164(1-2):67-76. doi: 10.1016/j.vetmic.2013.01.008. Epub 2013 Jan 29.

PMID:
23466328
42.

Using temporal mining to examine the development of lymphedema in breast cancer survivors.

Green JM, Paladugu S, Shuyu X, Stewart BR, Shyu CR, Armer JM.

Nurs Res. 2013 Mar-Apr;62(2):122-9. doi: 10.1097/NNR.0b013e318283da67.

43.

Clinical and microbiological features of shewanella bacteremia in patients with hepatobiliary disease.

Liu PY, Lin CF, Tung KC, Shyu CL, Wu MJ, Liu JW, Chang CS, Chan KW, Huang JA, Shi ZY.

Intern Med. 2013;52(4):431-8. Epub 2013 Feb 15.

44.

Antimicrobial potential for the combination of bovine lactoferrin or its hydrolysate with lactoferrin-resistant probiotics against foodborne pathogens.

Chen PW, Jheng TT, Shyu CL, Mao FC.

J Dairy Sci. 2013 Mar;96(3):1438-46. doi: 10.3168/jds.2012-6112. Epub 2013 Jan 16.

45.

A connected set of genes associated with programmed cell death implicated in controlling the hypersensitive response in maize.

Olukolu BA, Negeri A, Dhawan R, Venkata BP, Sharma P, Garg A, Gachomo E, Marla S, Chu K, Hasan A, Ji J, Chintamanani S, Green J, Shyu CR, Wisser R, Holland J, Johal G, Balint-Kurti P.

Genetics. 2013 Feb;193(2):609-20. doi: 10.1534/genetics.112.147595. Epub 2012 Dec 5.

46.
47.

PhenoPhyte: a flexible affordable method to quantify 2D phenotypes from imagery.

Green JM, Appel H, Rehrig EM, Harnsomburana J, Chang JF, Balint-Kurti P, Shyu CR.

Plant Methods. 2012 Nov 6;8(1):45. doi: 10.1186/1746-4811-8-45.

48.

Clarithromycin modulates Helicobacter pylori-induced activation of nuclear factor-κB through classical and alternative pathways in gastric epithelial cells.

Peng YC, Ho SP, Shyu CL, Chang CS, Huang LR.

Clin Exp Med. 2014 Feb;14(1):53-9. doi: 10.1007/s10238-012-0217-2. Epub 2012 Nov 6.

PMID:
23129507
49.

PBSword: a web server for searching similar protein-protein binding sites.

Pang B, Kuang X, Zhao N, Korkin D, Shyu CR.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W428-34. doi: 10.1093/nar/gks527. Epub 2012 Jun 11.

50.

Prevalence of attention-deficit/hyperactivity disorder in patients with pediatric allergic disorders: a nationwide, population-based study.

Shyu CS, Lin HK, Lin CH, Fu LS.

J Microbiol Immunol Infect. 2012 Jun;45(3):237-42. doi: 10.1016/j.jmii.2011.11.008. Epub 2012 May 12.

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