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Items: 1 to 50 of 579

1.

Quantitative Assessment of Learning Behaviors for Oncology Providers.

Wood M, George TJ, Manochakian R, Polansky M, Baer A, Grupe A, Shyr Y, Wang C, Horn L.

J Cancer Educ. 2019 Aug 3. doi: 10.1007/s13187-019-01593-4. [Epub ahead of print]

PMID:
31377987
2.

scRNABatchQC: Multi-samples quality control for single cell RNA-seq data.

Liu Q, Sheng Q, Ping J, Ramirez MA, Lau KS, Coffey R, Shyr Y.

Bioinformatics. 2019 Aug 2. pii: btz601. doi: 10.1093/bioinformatics/btz601. [Epub ahead of print]

PMID:
31373345
3.

Extramedullary Leukemia Behaving as Solid Cancer: Clinical, Histologic, and Genetic Clues to Chemoresistance in Organ Sites.

Cunningham I, Hamele-Bena D, Guo Y, Shiomi T, Papp AC, Chakrvarti B, Yang J, Shyr Y, Fisher RA.

Am J Hematol. 2019 Jul 28. doi: 10.1002/ajh.25594. [Epub ahead of print]

PMID:
31353508
4.

Identification of Targetable Recurrent MAP3K8 Rearrangements in Melanomas Lacking Known Driver Mutations.

Lehmann BD, Shaver TM, Johnson DB, Li Z, Gonzalez-Ericsson PI, Sánchez V, Shyr Y, Sanders ME, Pietenpol JA.

Mol Cancer Res. 2019 Jun 11. doi: 10.1158/1541-7786.MCR-19-0257. [Epub ahead of print]

PMID:
31186280
5.

Reappraisal of pancreas transplantation.

Shyr YM, Wang SE, Chen SC, Shyr BU.

J Chin Med Assoc. 2019 Jul;82(7):531-534. doi: 10.1097/JCMA.0000000000000122.

PMID:
31094861
6.

Surgical, survival, and oncological outcomes after vascular resection in robotic and open pancreaticoduodenectomy.

Shyr BU, Chen SC, Shyr YM, Wang SE.

Surg Endosc. 2019 Apr 8. doi: 10.1007/s00464-019-06779-x. [Epub ahead of print]

PMID:
30963260
7.

Aberrant FGFR signaling mediates resistance to CDK4/6 inhibitors in ER+ breast cancer.

Formisano L, Lu Y, Servetto A, Hanker AB, Jansen VM, Bauer JA, Sudhan DR, Guerrero-Zotano AL, Croessmann S, Guo Y, Ericsson PG, Lee KM, Nixon MJ, Schwarz LJ, Sanders ME, Dugger TC, Cruz MR, Behdad A, Cristofanilli M, Bardia A, O'Shaughnessy J, Nagy RJ, Lanman RB, Solovieff N, He W, Miller M, Su F, Shyr Y, Mayer IA, Balko JM, Arteaga CL.

Nat Commun. 2019 Mar 26;10(1):1373. doi: 10.1038/s41467-019-09068-2.

8.

Response to: "Propensity score-matched analysis to assess the outcome of surgical procedures".

Shyr YM.

Surgery. 2019 Jun;165(6):1248. doi: 10.1016/j.surg.2019.01.021. Epub 2019 Mar 12. No abstract available.

PMID:
30876669
9.

Palliative Care Referrals for Advanced Non-small-cell Lung Cancer (NSCLC): Patient and Provider Attitudes and Practices.

Feld E, Singhi EK, Phillips S, Huang LC, Shyr Y, Horn L.

Clin Lung Cancer. 2019 May;20(3):e291-e298. doi: 10.1016/j.cllc.2019.02.002. Epub 2019 Feb 20.

PMID:
30862422
10.

Income, costs, and health care utilization may influence surgical choice in early stage breast cancer.

Sweeting RS, Du L, Shyr Y, Hooks MA.

Breast J. 2019 Mar;25(2):334-337. doi: 10.1111/tbj.13223. Epub 2019 Feb 25. No abstract available.

PMID:
30803098
11.

Comparison of the Clinicopathological Characteristics and Genetic Alterations Between Patients with Gastric Cancer with or Without Helicobacter pylori Infection.

Fang WL, Huang KH, Chang SC, Lin CH, Chen MH, Chao Y, Lo SS, Li AF, Wu CW, Shyr YM.

Oncologist. 2019 Feb 22. pii: theoncologist.2018-0742. doi: 10.1634/theoncologist.2018-0742. [Epub ahead of print]

PMID:
30796154
12.

Interplay between miRNAs and host genes and their role in cancer.

Liu B, Shyr Y, Cai J, Liu Q.

Brief Funct Genomics. 2018 Jul 22;18(4):255-266. doi: 10.1093/bfgp/elz002.

13.

Systems Biology Analyses Show Hyperactivation of Transforming Growth Factor-β and JNK Signaling Pathways in Esophageal Cancer.

Blum AE, Venkitachalam S, Ravillah D, Chelluboyina AK, Kieber-Emmons AM, Ravi L, Kresak A, Chandar AK, Markowitz SD, Canto MI, Wang JS, Shaheen NJ, Guo Y, Shyr Y, Willis JE, Chak A, Varadan V, Guda K.

Gastroenterology. 2019 May;156(6):1761-1774. doi: 10.1053/j.gastro.2019.01.263. Epub 2019 Feb 12.

PMID:
30768984
14.

Correction: Prorenin receptor acts as a potential molecular target for pancreatic ductal adenocarcinoma diagnosis.

Arundhathi A, Chuang WH, Chen JK, Wang SE, Shyr YM, Chen JY, Liao WN, Chen HW, Teng YM, Pai CC, Wang CH.

Oncotarget. 2019 Jan 11;10(4):558. doi: 10.18632/oncotarget.26597. eCollection 2019 Jan 11.

15.

Human PAH is characterized by a pattern of lipid-related insulin resistance.

Hemnes AR, Luther JM, Rhodes CJ, Burgess JP, Carlson J, Fan R, Fessel JP, Fortune N, Gerszten RE, Halliday SJ, Hekmat R, Howard L, Newman JH, Niswender KD, Pugh ME, Robbins IM, Sheng Q, Shibao CA, Shyr Y, Sumner S, Talati M, Wharton J, Wilkins MR, Ye F, Yu C, West J, Brittain EL.

JCI Insight. 2019 Jan 10;4(1). pii: 123611. doi: 10.1172/jci.insight.123611. [Epub ahead of print]

16.

beRBP: binding estimation for human RNA-binding proteins.

Yu H, Wang J, Sheng Q, Liu Q, Shyr Y.

Nucleic Acids Res. 2019 Mar 18;47(5):e26. doi: 10.1093/nar/gky1294.

17.

Periampullary Gangliocytic Paraganglioma.

Chiang CS, Shyr BU, Chen SC, Shyr YM, Wang SE.

J Gastrointest Surg. 2018 Dec 18. doi: 10.1007/s11605-018-4019-z. [Epub ahead of print]

PMID:
30565068
18.

Learning curves for robotic pancreatic surgery-from distal pancreatectomy to pancreaticoduodenectomy.

Shyr BU, Chen SC, Shyr YM, Wang SE.

Medicine (Baltimore). 2018 Nov;97(45):e13000. doi: 10.1097/MD.0000000000013000.

19.

Quantitative assessment of cell population diversity in single-cell landscapes.

Liu Q, Herring CA, Sheng Q, Ping J, Simmons AJ, Chen B, Banerjee A, Li W, Gu G, Coffey RJ, Shyr Y, Lau KS.

PLoS Biol. 2018 Oct 22;16(10):e2006687. doi: 10.1371/journal.pbio.2006687. eCollection 2018 Oct.

20.

LNK deficiency promotes acute aortic dissection and rupture.

Laroumanie F, Korneva A, Bersi MR, Alexander MR, Xiao L, Zhong X, Van Beusecum JP, Chen Y, Saleh MA, McMaster WG, Gavulic KA, Dale BL, Zhao S, Guo Y, Shyr Y, Perrien DS, Cox NJ, Curci JA, Humphrey JD, Madhur MS.

JCI Insight. 2018 Oct 18;3(20). pii: 122558. doi: 10.1172/jci.insight.122558.

21.

HACER: an atlas of human active enhancers to interpret regulatory variants.

Wang J, Dai X, Berry LD, Cogan JD, Liu Q, Shyr Y.

Nucleic Acids Res. 2019 Jan 8;47(D1):D106-D112. doi: 10.1093/nar/gky864.

22.

First-line Chemotherapy Responsiveness and Patterns of Metastatic Spread Identify Clinical Syndromes Present Within Advanced KRAS Mutant Non-Small-cell Lung Cancer With Different Prognostic Significance.

Iams WT, Yu H, Shyr Y, Patil T, Horn L, McCoach C, Kelly K, Doebele RC, Camidge DR.

Clin Lung Cancer. 2018 Nov;19(6):531-543. doi: 10.1016/j.cllc.2018.08.011. Epub 2018 Aug 22.

PMID:
30197261
23.

Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation.

Wang J, Zhao Y, Zhou X, Hiebert SW, Liu Q, Shyr Y.

BMC Genomics. 2018 Aug 23;19(1):633. doi: 10.1186/s12864-018-5016-z.

24.

Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins.

Allen RM, Zhao S, Ramirez Solano MA, Zhu W, Michell DL, Wang Y, Shyr Y, Sethupathy P, Linton MF, Graf GA, Sheng Q, Vickers KC.

J Extracell Vesicles. 2018 Aug 13;7(1):1506198. doi: 10.1080/20013078.2018.1506198. eCollection 2018.

25.

Comparison between robotic and open pancreaticoduodenectomy with modified Blumgart pancreaticojejunostomy: A propensity score-matched study.

Wang SE, Shyr BU, Chen SC, Shyr YM.

Surgery. 2018 Dec;164(6):1162-1167. doi: 10.1016/j.surg.2018.06.031. Epub 2018 Aug 6.

PMID:
30093277
26.

Genomic Profiling of T-Cell Neoplasms Reveals Frequent JAK1 and JAK3 Mutations With Clonal Evasion From Targeted Therapies.

Greenplate A, Wang K, Tripathi RM, Palma N, Ali SM, Stephens PJ, Miller VA, Shyr Y, Guo Y, Reddy NM, Kozhaya L, Unutmaz D, Chen X, Irish JM, Davé UP.

JCO Precis Oncol. 2018;2018. doi: 10.1200/PO.17.00019. Epub 2018 Feb 13.

27.

Clinicopathological differences in signet ring cell adenocarcinoma between early and advanced gastric cancer.

Kao YC, Fang WL, Wang RF, Li AF, Yang MH, Wu CW, Shyr YM, Huang KH.

Gastric Cancer. 2019 Mar;22(2):255-263. doi: 10.1007/s10120-018-0860-8. Epub 2018 Aug 1.

PMID:
30069742
28.

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing.

Zhao S, Li CI, Guo Y, Sheng Q, Shyr Y.

BMC Bioinformatics. 2018 May 30;19(1):191. doi: 10.1186/s12859-018-2191-5.

29.

Correlation between HGF/c-Met and Notch1 signaling pathways in human gastric cancer cells.

Huang KH, Sung IC, Fang WL, Chi CW, Yeh TS, Lee HC, Yin PH, Li AF, Wu CW, Shyr YM, Yang MH.

Oncol Rep. 2018 Jul;40(1):294-302. doi: 10.3892/or.2018.6447. Epub 2018 May 16.

30.

Robotic distal pancreatectomy: Comparison of spleen-preservation by the Warshaw technique and splenectomy.

Wang SE, Shyr BU, Chen SC, Shyr YM.

Int J Med Robot. 2018 Oct;14(5):e1922. doi: 10.1002/rcs.1922. Epub 2018 May 10.

PMID:
29745464
31.

Myeloid-derived macrophages and secreted HSP90α induce pancreatic ductal adenocarcinoma development.

Chen CC, Chen LL, Li CP, Hsu YT, Jiang SS, Fan CS, Chua KV, Huang SX, Shyr YM, Chen LT, Huang TS.

Oncoimmunology. 2018 Feb 1;7(5):e1424612. doi: 10.1080/2162402X.2018.1424612. eCollection 2018.

32.

Directed solutions to address differences in access to liver transplantation.

Ye F, Sheng Q, Feurer ID, Zhao Z, Fan R, Teng J, Ping J, Rega SA, Hanto DW, Shyr Y, Karp SJ.

Am J Transplant. 2018 Nov;18(11):2670-2678. doi: 10.1111/ajt.14889. Epub 2018 May 24.

PMID:
29689125
33.

Treatment options in idiopathic subglottic stenosis: protocol for a prospective international multicentre pragmatic trial.

Gelbard A, Shyr Y, Berry L, Hillel AT, Ekbom DC, Edell ES, Kasperbauer JL, Lott DG, Donovan DT, Garrett CG, Sandhu G, Daniero JJ, Netterville JL, Schindler JS, Smith ME, Bryson PC, Lorenz RR, Francis DO.

BMJ Open. 2018 Apr 10;8(4):e022243. doi: 10.1136/bmjopen-2018-022243.

34.

Caspase-3, a key apoptotic protein, as a prognostic marker in gastric cancer after curative surgery.

Huang KH, Fang WL, Li AF, Liang PH, Wu CW, Shyr YM, Yang MH.

Int J Surg. 2018 Apr;52:258-263. doi: 10.1016/j.ijsu.2018.02.055. Epub 2018 Mar 1.

PMID:
29501797
35.

Feasibility trial for primary stroke prevention in children with sickle cell anemia in Nigeria (SPIN trial).

Galadanci NA, Umar Abdullahi S, Vance LD, Musa Tabari A, Ali S, Belonwu R, Salihu A, Amal Galadanci A, Wudil Jibir B, Bello-Manga H, Neville K, Kirkham FJ, Shyr Y, Phillips S, Covert BV, Kassim AA, Jordan LC, Aliyu MH, DeBaun MR.

Am J Hematol. 2018 Mar;93(3):E83. doi: 10.1002/ajh.25012. Epub 2018 Feb 2. No abstract available.

36.

Dynamics of Zebrafish Heart Regeneration Using an HPLC-ESI-MS/MS Approach.

Ma D, Tu C, Sheng Q, Yang Y, Kan Z, Guo Y, Shyr Y, Scott IC, Lou X.

J Proteome Res. 2018 Mar 2;17(3):1300-1308. doi: 10.1021/acs.jproteome.7b00915. Epub 2018 Feb 5.

PMID:
29369637
37.

Robotic assisted excision of type I choledochal cyst with Roux-en-y hepaticojejunostomy reconstruction.

Wang SE, Chen SC, Shyr BU, Shyr YM.

Hepatobiliary Surg Nutr. 2017 Dec;6(6):397-400. doi: 10.21037/hbsn.2017.01.15.

38.

Toxicities, safeties and clinical response of dacarbazine-based chemotherapy on neuroendocrine tumors in Taiwan population.

Chiu HY, Lin LY, Chou WC, Fang WL, Shyr YM, Yeh YC, Mu-Hsin Chang P, Chen MH, Hung YP, Chao Y, Chien SH, Chen MH.

J Chin Med Assoc. 2018 May;81(5):423-428. doi: 10.1016/j.jcma.2017.08.020. Epub 2017 Dec 26.

39.

The Impact of Smoking and TP53 Mutations in Lung Adenocarcinoma Patients with Targetable Mutations-The Lung Cancer Mutation Consortium (LCMC2).

Aisner DL, Sholl LM, Berry LD, Rossi MR, Chen H, Fujimoto J, Moreira AL, Ramalingam SS, Villaruz LC, Otterson GA, Haura E, Politi K, Glisson B, Cetnar J, Garon EB, Schiller J, Waqar SN, Sequist LV, Brahmer J, Shyr Y, Kugler K, Wistuba II, Johnson BE, Minna JD, Kris MG, Bunn PA, Kwiatkowski DJ; LCMC2 investigators.

Clin Cancer Res. 2018 Mar 1;24(5):1038-1047. doi: 10.1158/1078-0432.CCR-17-2289. Epub 2017 Dec 7.

40.

Shanghai Score: A Prognostic and Adjuvant Treatment-evaluating System Constructed for Chinese Patients with Hepatocellular Carcinoma after Curative Resection.

Sun HC, Xie L, Yang XR, Li W, Yu J, Zhu XD, Xia Y, Zhang T, Xu Y, Hu B, Du LP, Zeng LY, Ouyang J, Zhang W, Song TQ, Li Q, Shi YH, Zhou J, Qiu SJ, Liu Q, Li YX, Tang ZY, Shyr Y, Shen F, Fan J.

Chin Med J (Engl). 2017 Nov 20;130(22):2650-2660. doi: 10.4103/0366-6999.218019. Erratum in: Chin Med J (Engl). 2017 Dec 20;130(24):3020.

41.

Comparative study of the 7th and 8th AJCC editions for gastric cancer patients after curative surgery.

Fang WL, Huang KH, Chen MH, Liu CA, Hung YP, Chao Y, Tai LC, Lo SS, Li AF, Wu CW, Shyr YM.

PLoS One. 2017 Nov 13;12(11):e0187626. doi: 10.1371/journal.pone.0187626. eCollection 2017.

42.

Endocan expression is correlated with poor progression-free survival in patients with pancreatic neuroendocrine tumors.

Lin LY, Yeh YC, Chu CH, Won JGS, Shyr YM, Chao Y, Li CP, Wang SE, Chen MH.

Medicine (Baltimore). 2017 Oct;96(41):e8262. doi: 10.1097/MD.0000000000008262.

43.

The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data.

Guo Y, Zhao S, Sheng Q, Samuels DC, Shyr Y.

BMC Genomics. 2017 Oct 3;18(Suppl 6):690. doi: 10.1186/s12864-017-4022-x.

44.

Longitudinal Cell-Free DNA Analysis in Patients with Small Cell Lung Cancer Reveals Dynamic Insights into Treatment Efficacy and Disease Relapse.

Almodovar K, Iams WT, Meador CB, Zhao Z, York S, Horn L, Yan Y, Hernandez J, Chen H, Shyr Y, Lim LP, Raymond CK, Lovly CM.

J Thorac Oncol. 2018 Jan;13(1):112-123. doi: 10.1016/j.jtho.2017.09.1951. Epub 2017 Sep 23.

45.

A pilot study of lymph node mapping with indocyanine green in robotic gastrectomy for gastric cancer.

Lan YT, Huang KH, Chen PH, Liu CA, Lo SS, Wu CW, Shyr YM, Fang WL.

SAGE Open Med. 2017 Aug 21;5:2050312117727444. doi: 10.1177/2050312117727444. eCollection 2017.

46.

Corrigendum to "Comparative Study of Exome Copy Number Variation Estimation Tools Using Array Comparative Genomic Hybridization as Control".

Guo Y, Sheng Q, Samuels DC, Lehmann B, Bauer JA, Pietenpol J, Shyr Y.

Biomed Res Int. 2017;2017:7409598. doi: 10.1155/2017/7409598. Epub 2017 Jul 18.

47.

Effects of Chinese medicinal herbs on expression of brain-derived Neurotrophic factor (BDNF) and its interaction with human breast cancer MDA-MB-231 cells and endothelial HUVECs.

Chiu JH, Chen FP, Tsai YF, Lin MT, Tseng LM, Shyr YM.

BMC Complement Altern Med. 2017 Aug 12;17(1):401. doi: 10.1186/s12906-017-1909-7.

48.

Genomic profiling of ER+ breast cancers after short-term estrogen suppression reveals alterations associated with endocrine resistance.

Giltnane JM, Hutchinson KE, Stricker TP, Formisano L, Young CD, Estrada MV, Nixon MJ, Du L, Sanchez V, Ericsson PG, Kuba MG, Sanders ME, Mu XJ, Van Allen EM, Wagle N, Mayer IA, Abramson V, Gόmez H, Rizzo M, Toy W, Chandarlapaty S, Mayer EL, Christiansen J, Murphy D, Fitzgerald K, Wang K, Ross JS, Miller VA, Stephens PJ, Yelensky R, Garraway L, Shyr Y, Meszoely I, Balko JM, Arteaga CL.

Sci Transl Med. 2017 Aug 9;9(402). pii: eaai7993. doi: 10.1126/scitranslmed.aai7993. Erratum in: Sci Transl Med. 2019 Feb 13;11(479):.

49.

Estimating relative mitochondrial DNA copy number using high throughput sequencing data.

Zhang P, Lehmann BD, Samuels DC, Zhao S, Zhao YY, Shyr Y, Guo Y.

Genomics. 2017 Oct;109(5-6):457-462. doi: 10.1016/j.ygeno.2017.07.002. Epub 2017 Jul 19.

50.

Comparison of the surgical outcomes of minimally invasive and open surgery for octogenarian and older compared to younger gastric cancer patients: a retrospective cohort study.

Liu CA, Huang KH, Chen MH, Lo SS, Li AF, Wu CW, Shyr YM, Fang WL.

BMC Surg. 2017 Jun 12;17(1):68. doi: 10.1186/s12893-017-0265-3.

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