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Cuff and sieve electrode (CASE): The combination of neural electrodes for bi-directional peripheral nerve interfacing.

Kim H, Dingle AM, Ness JP, Baek DH, Bong J, Lee IK, Shulzhenko NO, Zeng W, Israel JS, Pisaniello JA, Millevolte AXT, Park DW, Suminski AJ, Jung YH, Williams JC, Poore SO, Ma Z.

J Neurosci Methods. 2020 Apr 15;336:108602. doi: 10.1016/j.jneumeth.2020.108602. Epub 2020 Jan 22. Review.


Role of gut microbiota in type 2 diabetes pathophysiology.

Gurung M, Li Z, You H, Rodrigues R, Jump DB, Morgun A, Shulzhenko N.

EBioMedicine. 2020 Jan;51:102590. doi: 10.1016/j.ebiom.2019.11.051. Epub 2020 Jan 3. Review.


Improvements in Metabolic Syndrome by Xanthohumol Derivatives Are Linked to Altered Gut Microbiota and Bile Acid Metabolism.

Zhang Y, Bobe G, Revel JS, Rodrigues RR, Sharpton TJ, Fantacone ML, Raslan K, Miranda CL, Lowry MB, Blakemore PR, Morgun A, Shulzhenko N, Maier CS, Stevens JF, Gombart AF.

Mol Nutr Food Res. 2020 Jan;64(1):e1900789. doi: 10.1002/mnfr.201900789. Epub 2019 Dec 15.


Multispecialty Microsurgical Course Utilizing the Blue-Blood Chicken Thigh Model Significantly Improves Resident Comfort, Confidence, and Attitudes in Multiple Domains.

Shulzhenko NO, Zeng W, Albano NJ, Lyon SM, Wieland AM, Mahajan AY, Williams D, Bentz ML, Poore SO.

J Reconstr Microsurg. 2020 Feb;36(2):142-150. doi: 10.1055/s-0039-1700523. Epub 2019 Nov 5.


Strategies for interfacing with the trigeminal nerves in rodents for bioelectric medicine.

Dingle A, Zeng W, Ness JP, Albano N, Minor RL, Feldman C, Austin M, Brodnick SK, Shulzhenko N, Sanchez R, Lake WB, Williams JC, Poore SO, Suminski AJ.

J Neurosci Methods. 2019 Aug 1;324:108321. doi: 10.1016/j.jneumeth.2019.108321. Epub 2019 Jun 20. Review.


Divulge the bulge: an international survey of abdominal donor site morbidity in free autologous breast reconstruction.

Christie B, Shulzhenko NO, Poore SO, Afifi AM.

J Plast Surg Hand Surg. 2019 Oct;53(5):265-270. doi: 10.1080/2000656X.2019.1597372. Epub 2019 Apr 23.


Effect of temperature and time on the thanatomicrobiome of the cecum, ileum, kidney, and lung of domestic rabbits.

Lawrence KE, Lam KC, Morgun A, Shulzhenko N, Löhr CV.

J Vet Diagn Invest. 2019 Mar;31(2):155-163. doi: 10.1177/1040638719828412. Epub 2019 Feb 10.


The Surgical Treatment of Adult Acquired Buried Penis Syndrome: A New Classification System.

Hesse MA, Israel JS, Shulzhenko NO, Sanchez RJ, Garland CB, Siebert JW, Bentz ML, Williams DH, Poore SO.

Aesthet Surg J. 2019 Aug 22;39(9):979-988. doi: 10.1093/asj/sjy325.


Commensal bacteria contribute to insulin resistance in aging by activating innate B1a cells.

Bodogai M, O'Connell J, Kim K, Kim Y, Moritoh K, Chen C, Gusev F, Vaughan K, Shulzhenko N, Mattison JA, Lee-Chang C, Chen W, Carlson O, Becker KG, Gurung M, Morgun A, White J, Meade T, Perdue K, Mack M, Ferrucci L, Trinchieri G, de Cabo R, Rogaev E, Egan J, Wu J, Biragyn A.

Sci Transl Med. 2018 Nov 14;10(467). pii: eaat4271. doi: 10.1126/scitranslmed.aat4271.


Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions.

Rodrigues RR, Shulzhenko N, Morgun A.

Methods Mol Biol. 2018;1849:227-242. doi: 10.1007/978-1-4939-8728-3_15.


Transkingdom network reveals bacterial players associated with cervical cancer gene expression program.

Lam KC, Vyshenska D, Hu J, Rodrigues RR, Nilsen A, Zielke RA, Brown NS, Aarnes EK, Sikora AE, Shulzhenko N, Lyng H, Morgun A.

PeerJ. 2018 Sep 19;6:e5590. doi: 10.7717/peerj.5590. eCollection 2018.


CVID enteropathy is characterized by exceeding low mucosal IgA levels and interferon-driven inflammation possibly related to the presence of a pathobiont.

Shulzhenko N, Dong X, Vyshenska D, Greer RL, Gurung M, Vasquez-Perez S, Peremyslova E, Sosnovtsev S, Quezado M, Yao M, Montgomery-Recht K, Strober W, Fuss IJ, Morgun A.

Clin Immunol. 2018 Dec;197:139-153. doi: 10.1016/j.clim.2018.09.008. Epub 2018 Sep 19.


Precise One-Suture Needle-Guided Technique for Window Creation in Supermicrosurgical End-to-Side Anastomosis.

Zeng W, Shulzhenko NO, Dingle AM, Poore SO.

J Reconstr Microsurg. 2018 May;34(4):e1-e2. doi: 10.1055/s-0038-1667361. Epub 2018 Aug 18. No abstract available.


"Blue-Blood"- Infused Chicken Thigh Training Model for Microsurgery and Supermicrosurgery.

Zeng W, Shulzhenko NO, Feldman CC, Dingle AM, Poore SO.

Plast Reconstr Surg Glob Open. 2018 Apr 20;6(4):e1695. doi: 10.1097/GOX.0000000000001695. eCollection 2018 Apr.


Antibiotic-Induced Alterations in Gut Microbiota Are Associated with Changes in Glucose Metabolism in Healthy Mice.

Rodrigues RR, Greer RL, Dong X, DSouza KN, Gurung M, Wu JY, Morgun A, Shulzhenko N.

Front Microbiol. 2017 Nov 22;8:2306. doi: 10.3389/fmicb.2017.02306. eCollection 2017.


Arsenic exposure and intestinal microbiota in children from Sirajdikhan, Bangladesh.

Dong X, Shulzhenko N, Lemaitre J, Greer RL, Peremyslova K, Quamruzzaman Q, Rahman M, Hasan OS, Joya SA, Golam M, Christiani DC, Morgun A, Kile ML.

PLoS One. 2017 Dec 6;12(12):e0188487. doi: 10.1371/journal.pone.0188487. eCollection 2017.


Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota.

Manes NP, Shulzhenko N, Nuccio AG, Azeem S, Morgun A, Nita-Lazar A.

mSystems. 2017 Oct 24;2(5). pii: e00107-17. doi: 10.1128/mSystems.00107-17. eCollection 2017 Sep-Oct.


Reply to: Threshold of number of rib fractures in elderly blunt trauma: A simple or complex matter of numbers?

Shulzhenko N, Zens T, Beems M, Haines K, Agarwal SK.

Surgery. 2017 Dec;162(6):1343-1344. doi: 10.1016/j.surg.2017.05.009. Epub 2017 Jul 11. No abstract available.


Interplay between viruses and bacterial microbiota in cancer development.

Vyshenska D, Lam KC, Shulzhenko N, Morgun A.

Semin Immunol. 2017 Aug;32:14-24. doi: 10.1016/j.smim.2017.05.003. Epub 2017 Jun 9. Review.


Mycobacterium tuberculosis Proteome Response to Antituberculosis Compounds Reveals Metabolic "Escape" Pathways That Prolong Bacterial Survival.

Danelishvili L, Shulzhenko N, Chinison JJJ, Babrak L, Hu J, Morgun A, Burrows G, Bermudez LE.

Antimicrob Agents Chemother. 2017 Jun 27;61(7). pii: e00430-17. doi: 10.1128/AAC.00430-17. Print 2017 Jul.


Differentially correlated genes in co-expression networks control phenotype transitions.

Thomas LD, Vyshenska D, Shulzhenko N, Yambartsev A, Morgun A.

F1000Res. 2016 Nov 22;5:2740. doi: 10.12688/f1000research.9708.1. eCollection 2016.


Number of rib fractures thresholds independently predict worse outcomes in older patients with blunt trauma.

Shulzhenko NO, Zens TJ, Beems MV, Jung HS, O'Rourke AP, Liepert AE, Scarborough JE, Agarwal SK.

Surgery. 2017 Apr;161(4):1083-1089. doi: 10.1016/j.surg.2016.10.018. Epub 2016 Dec 5.


Akkermansia muciniphila mediates negative effects of IFNγ on glucose metabolism.

Greer RL, Dong X, Moraes AC, Zielke RA, Fernandes GR, Peremyslova E, Vasquez-Perez S, Schoenborn AA, Gomes EP, Pereira AC, Ferreira SR, Yao M, Fuss IJ, Strober W, Sikora AE, Taylor GA, Gulati AS, Morgun A, Shulzhenko N.

Nat Commun. 2016 Nov 14;7:13329. doi: 10.1038/ncomms13329.


Unexpected links reflect the noise in networks.

Yambartsev A, Perlin MA, Kovchegov Y, Shulzhenko N, Mine KL, Dong X, Morgun A.

Biol Direct. 2016 Oct 13;11(1):52. doi: 10.1186/s13062-016-0155-0.


A Twelve-Year Consecutive Case Experience in Thoracic Reconstruction.

Chen JT, Bonneau LA, Weigel TL, Maloney JD, Castro F, Shulzhenko N, Bentz ML.

Plast Reconstr Surg Glob Open. 2016 Mar 17;4(3):e638. doi: 10.1097/GOX.0000000000000603. eCollection 2016 Mar.


Investigating a holobiont: Microbiota perturbations and transkingdom networks.

Greer R, Dong X, Morgun A, Shulzhenko N.

Gut Microbes. 2016;7(2):126-35. doi: 10.1080/19490976.2015.1128625. Epub 2016 Mar 16. Review.


Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.

Dong X, Yambartsev A, Ramsey SA, Thomas LD, Shulzhenko N, Morgun A.

Bioinform Biol Insights. 2015 Apr 29;9:61-74. doi: 10.4137/BBI.S12467. eCollection 2015. Review.


Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks.

Morgun A, Dzutsev A, Dong X, Greer RL, Sexton DJ, Ravel J, Schuster M, Hsiao W, Matzinger P, Shulzhenko N.

Gut. 2015 Nov;64(11):1732-43. doi: 10.1136/gutjnl-2014-308820. Epub 2015 Jan 22.


Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman.

Shulzhenko N, Lyng H, Sanson GF, Morgun A.

Trends Microbiol. 2014 Jun;22(6):345-53. doi: 10.1016/j.tim.2014.02.009. Epub 2014 Mar 24. Review.


Bridging immunity and lipid metabolism by gut microbiota.

Greer RL, Morgun A, Shulzhenko N.

J Allergy Clin Immunol. 2013 Aug;132(2):253-62; quiz 263. doi: 10.1016/j.jaci.2013.06.025. Review.


Gene network reconstruction reveals cell cycle and antiviral genes as major drivers of cervical cancer.

Mine KL, Shulzhenko N, Yambartsev A, Rochman M, Sanson GF, Lando M, Varma S, Skinner J, Volfovsky N, Deng T, Brenna SM, Carvalho CR, Ribalta JC, Bustin M, Matzinger P, Silva ID, Lyng H, Gerbase-DeLima M, Morgun A.

Nat Commun. 2013;4:1806. doi: 10.1038/ncomms2693.


Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut.

Shulzhenko N, Morgun A, Hsiao W, Battle M, Yao M, Gavrilova O, Orandle M, Mayer L, Macpherson AJ, McCoy KD, Fraser-Liggett C, Matzinger P.

Nat Med. 2011 Nov 20;17(12):1585-93. doi: 10.1038/nm.2505.


Tissue-specific expression of IL-15RA alternative splicing transcripts and its regulation by DNA methylation.

Diniz SN, Pendeloski KP, Morgun A, Chepelev I, Gerbase-DeLima M, Shulzhenko N.

Eur Cytokine Netw. 2010 Dec;21(4):308-18. doi: 10.1684/ecn.2010.0218. Epub 2010 Nov 24.


Spontaneous mutation in the Cd79b gene leads to a block in B-lymphocyte development at the C' (early pre-B) stage.

Shulzhenko N, Morgun A, Matzinger P.

Genes Immun. 2009 Dec;10(8):722-6. doi: 10.1038/gene.2009.70. Epub 2009 Sep 3.


Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection.

Johnson AL, Aravind L, Shulzhenko N, Morgun A, Choi SY, Crockford TL, Lambe T, Domaschenz H, Kucharska EM, Zheng L, Vinuesa CG, Lenardo MJ, Goodnow CC, Cornall RJ, Schwartz RH.

Nat Immunol. 2009 Aug;10(8):831-9. doi: 10.1038/ni.1769. Epub 2009 Jul 13. Erratum in: Nat Immunol. 2010 Jan;11(1):97.


New approach reveals CD28 and IFNG gene interaction in the susceptibility to cervical cancer.

Guzman VB, Yambartsev A, Goncalves-Primo A, Silva ID, Carvalho CR, Ribalta JC, Goulart LR, Shulzhenko N, Gerbase-Delima M, Morgun A.

Hum Mol Genet. 2008 Jun 15;17(12):1838-44. doi: 10.1093/hmg/ddn077. Epub 2008 Mar 12.


Differential expression of new LTA splice variants upon lymphocyte activation.

Smirnova AS, Ferreira-Silva KC, Mine KL, Andrade-Oliveira V, Shulzhenko N, Gerbase-DeLima M, Morgun A.

Mol Immunol. 2008 Jan;45(1):295-300. Epub 2007 May 22.


Microarrays for cancer diagnosis and classification.

Perez-Diez A, Morgun A, Shulzhenko N.

Adv Exp Med Biol. 2007;593:74-85. Review.


A novel strategy for defining haplotypes by selective depletion using restriction enzymes.

Smirnova AS, Ferreira-Silva KC, Mine KL, Andrade-Oliveira V, Shulzhenko N, Gerbase-DeLima M, Morgun A.

Immunogenetics. 2007 Jan;59(1):93-8. Epub 2006 Dec 5.


Molecular profiling improves diagnoses of rejection and infection in transplanted organs.

Morgun A, Shulzhenko N, Perez-Diez A, Diniz RV, Sanson GF, Almeida DR, Matzinger P, Gerbase-DeLima M.

Circ Res. 2006 Jun 23;98(12):e74-83.


Expression of Fas, FasL, and soluble Fas mRNA in endomyocardial biopsies of human cardiac allografts.

Pérez EC, Shulzhenko N, Morgun A, Diniz RV, Almeida DR, Musatti CC, Gerbase-DeLima M.

Hum Immunol. 2006 Jan-Feb;67(1-2):22-6. Epub 2006 Apr 5.


Selection of control genes for quantitative RT-PCR based on microarray data.

Shulzhenko N, Yambartsev A, Goncalves-Primo A, Gerbase-DeLima M, Morgun A.

Biochem Biophys Res Commun. 2005 Nov 11;337(1):306-12.


Characterization of CD28, CTLA4, and ICOS polymorphisms in three Brazilian ethnic groups.

Guzman VB, Morgun A, Shulzhenko N, Mine KL, Gonçalves-Primo A, Musatti CC, Gerbase-Delima M.

Hum Immunol. 2005 Jul;66(7):773-6.


Identification of new alternative splice events in the TCIRG1 gene in different human tissues.

Smirnova AS, Morgun A, Shulzhenko N, Silva ID, Gerbase-DeLima M.

Biochem Biophys Res Commun. 2005 May 13;330(3):943-9.


[HLA polymorphism in a racially admixed sample of the population of Teresina, Piauí].

Monte SJ, Moita Neto JM, Rampim GF, Shulzhenko N, Morgun A, Gerbase-DeLima M; Grupo HLA-UFPI.

Rev Assoc Med Bras (1992). 2004 Oct-Dec;50(4):422-6. Epub 2005 Jan 14. Portuguese.


T cell receptor excision circles (TRECs) in relation to acute cardiac allograft rejection.

Morgun A, Shulzhenko N, Socorro-Silva A, Diniz RV, Almeida DR, Gerbase-Delima M.

J Clin Immunol. 2004 Nov;24(6):612-6.


Pre- and post-transplant anti-myosin and anti-heat shock protein antibodies and cardiac transplant outcome.

Morgun A, Shulzhenko N, Unterkircher CS, Diniz RV, Pereira AB, Silva MS, Nishida SK, Almeida DR, Carvalho AC, Franco M, Souza MM, Gerbase-DeLima M.

J Heart Lung Transplant. 2004 Feb;23(2):204-9.


Human leucocyte antigen and human T-cell lymphotropic virus type 1 associated diseases in Brazil.

Borducchi DM, Gerbase-DeLima M, Morgun A, Shulzhenko N, Pombo-de-Oliveira MS, Kerbauy J, Rodrigues de Oliveira JS.

Br J Haematol. 2003 Dec;123(5):954-5. No abstract available.


Interleukin-2 gene polymorphism is associated with renal but not cardiac transplant outcome.

Morgun A, Shulzhenko N, Rampim GF, Medina JO, Machado PG, Diniz RV, Almeida DR, Gerbase-DeLima M.

Transplant Proc. 2003 Jun;35(4):1344-5.


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