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p63 and SOX2 Dictate Glucose Reliance and Metabolic Vulnerabilities in Squamous Cell Carcinomas.

Hsieh MH, Choe JH, Gadhvi J, Kim YJ, Arguez MA, Palmer M, Gerold H, Nowak C, Do H, Mazambani S, Knighton JK, Cha M, Goodwin J, Kang MK, Jeong JY, Lee SY, Faubert B, Xuan Z, Abel ED, Scafoglio C, Shackelford DB, Minna JD, Singh PK, Shulaev V, Bleris L, Hoyt K, Kim J, Inoue M, DeBerardinis RJ, Kim TH, Kim JW.

Cell Rep. 2019 Aug 13;28(7):1860-1878.e9. doi: 10.1016/j.celrep.2019.07.027.


Combination of an AccQ•Tag-Ultra-Performance Liquid Chromatographic Method with Tandem Mass Spectrometry for the Analysis of Amino Acids.

Salazar C, Armenta JM, Cortés DF, Shulaev V.

Methods Mol Biol. 2019;2030:191-206. doi: 10.1007/978-1-4939-9639-1_15.


Local and Systemic Metabolic Responses during Light-Induced Rapid Systemic Signaling.

Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R.

Plant Physiol. 2018 Dec;178(4):1461-1472. doi: 10.1104/pp.18.01031. Epub 2018 Oct 2.


Supercritical fluid chromatography coupled to mass spectrometry - A metabolomics perspective.

Shulaev V, Isaac G.

J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Aug 15;1092:499-505. doi: 10.1016/j.jchromb.2018.06.021. Epub 2018 Jun 12. Review.


Rapid accumulation of glutathione during light stress in Arabidopsis.

Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R.

Plant Cell Physiol. 2018 May 25. doi: 10.1093/pcp/pcy101. [Epub ahead of print]


Metabolomics technology and bioinformatics for precision medicine.

Azad RK, Shulaev V.

Brief Bioinform. 2018 Jan 3. doi: 10.1093/bib/bbx170. [Epub ahead of print]


Targeting Hypoxia-Inducible Factor-1α/Pyruvate Dehydrogenase Kinase 1 Axis by Dichloroacetate Suppresses Bleomycin-induced Pulmonary Fibrosis.

Goodwin J, Choi H, Hsieh MH, Neugent ML, Ahn JM, Hayenga HN, Singh PK, Shackelford DB, Lee IK, Shulaev V, Dhar S, Takeda N, Kim JW.

Am J Respir Cell Mol Biol. 2018 Feb;58(2):216-231. doi: 10.1165/rcmb.2016-0186OC.


Plant lipidomics at the crossroads: From technology to biology driven science.

Shulaev V, Chapman KD.

Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Aug;1862(8):786-791. doi: 10.1016/j.bbalip.2017.02.011. Epub 2017 Feb 24. Review.


Development and application of sub-2-μm particle CO2 -based chromatography coupled to mass spectrometry for comprehensive analysis of lipids in cottonseed extracts.

Salazar C, Jones MD, Sturtevant D, Horn PJ, Crossley J, Zaman K, Chapman KD, Wrona M, Isaac G, Smith NW, Shulaev V.

Rapid Commun Mass Spectrom. 2017 Apr 15;31(7):591-605. doi: 10.1002/rcm.7825.


A role for leucoanthocyanidin reductase in the extension of proanthocyanidins.

Liu C, Wang X, Shulaev V, Dixon RA.

Nat Plants. 2016 Nov 21;2:16182. doi: 10.1038/nplants.2016.182.


Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics.

Ghaste M, Mistrik R, Shulaev V.

Int J Mol Sci. 2016 May 25;17(6). pii: E816. doi: 10.3390/ijms17060816. Review.


Crystal structure of (3E,5E)-3,5-bis-[4-(di-ethyl-aza-nium-yl)benzyl-idene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material.

Nesterov VV, Zakharov LN, Nesterov VN, Shulaev V.

Acta Crystallogr E Crystallogr Commun. 2015 Nov 21;71(Pt 12):1513-5. doi: 10.1107/S2056989015020952. eCollection 2015 Dec 1.


A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes.

Tripathi P, Rabara RC, Reese RN, Miller MA, Rohila JS, Subramanian S, Shen QJ, Morandi D, Bücking H, Shulaev V, Rushton PJ.

BMC Genomics. 2016 Feb 9;17:102. doi: 10.1186/s12864-016-2420-0.


Understanding Water-Stress Responses in Soybean Using Hydroponics System-A Systems Biology Perspective.

Tripathi P, Rabara RC, Shulaev V, Shen QJ, Rushton PJ.

Front Plant Sci. 2015 Dec 21;6:1145. doi: 10.3389/fpls.2015.01145. eCollection 2015.


Constitutive and Companion Cell-Specific Overexpression of AVP1, Encoding a Proton-Pumping Pyrophosphatase, Enhances Biomass Accumulation, Phloem Loading, and Long-Distance Transport.

Khadilkar AS, Yadav UP, Salazar C, Shulaev V, Paez-Valencia J, Pizzio GA, Gaxiola RA, Ayre BG.

Plant Physiol. 2016 Jan;170(1):401-14. doi: 10.1104/pp.15.01409. Epub 2015 Nov 3.


A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos.

Rahlouni F, Szarka S, Shulaev V, Prokai L.

Zebrafish. 2015 Dec;12(6):398-407. doi: 10.1089/zeb.2015.1121. Epub 2015 Oct 6.


Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants.

Suzuki N, Devireddy AR, Inupakutika MA, Baxter A, Miller G, Song L, Shulaev E, Azad RK, Shulaev V, Mittler R.

Plant J. 2015 Nov;84(4):760-72. doi: 10.1111/tpj.13039.


Chemical composition of volatile aroma metabolites and their glycosylated precursors that can uniquely differentiate individual grape cultivars.

Ghaste M, Narduzzi L, Carlin S, Vrhovsek U, Shulaev V, Mattivi F.

Food Chem. 2015 Dec 1;188:309-19. doi: 10.1016/j.foodchem.2015.04.056. Epub 2015 Apr 24.


Glucose induces sensitivity to oxygen deprivation and modulates insulin/IGF-1 signaling and lipid biosynthesis in Caenorhabditis elegans.

Garcia AM, Ladage ML, Dumesnil DR, Zaman K, Shulaev V, Azad RK, Padilla PA.

Genetics. 2015 May;200(1):167-84. doi: 10.1534/genetics.115.174631. Epub 2015 Mar 10.


Synthesis and quantitative analysis of plasma-targeted metabolites of catechin and epicatechin.

Blount JW, Redan BW, Ferruzzi MG, Reuhs BL, Cooper BR, Harwood JS, Shulaev V, Pasinetti G, Dixon RA.

J Agric Food Chem. 2015 Mar 4;63(8):2233-40. doi: 10.1021/jf505922b. Epub 2015 Feb 20.


Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato.

Lu N, Carter JD, Boluarte Medina T, Holt SH, Manrique-Carpintero NC, Upham KT, Pereira A, Shulaev V, Veilleux RE.

Plant Cell Rep. 2014 Jul;33(7):1203-16. doi: 10.1007/s00299-014-1610-y. Epub 2014 Apr 12.


Abiotic and biotic stress combinations.

Suzuki N, Rivero RM, Shulaev V, Blumwald E, Mittler R.

New Phytol. 2014 Jul;203(1):32-43. doi: 10.1111/nph.12797. Epub 2014 Apr 11. Review.


The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.

Sha W, Martins AM, Laubenbacher R, Mendes P, Shulaev V.

PLoS One. 2013 Sep 20;8(9):e74939. doi: 10.1371/journal.pone.0074939. eCollection 2013.


Temporal-spatial interaction between reactive oxygen species and abscisic acid regulates rapid systemic acclimation in plants.

Suzuki N, Miller G, Salazar C, Mondal HA, Shulaev E, Cortes DF, Shuman JL, Luo X, Shah J, Schlauch K, Shulaev V, Mittler R.

Plant Cell. 2013 Sep;25(9):3553-69. doi: 10.1105/tpc.113.114595. Epub 2013 Sep 13.


NAF-1 and mitoNEET are central to human breast cancer proliferation by maintaining mitochondrial homeostasis and promoting tumor growth.

Sohn YS, Tamir S, Song L, Michaeli D, Matouk I, Conlan AR, Harir Y, Holt SH, Shulaev V, Paddock ML, Hochberg A, Cabanchick IZ, Onuchic JN, Jennings PA, Nechushtai R, Mittler R.

Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14676-81. doi: 10.1073/pnas.1313198110. Epub 2013 Aug 19.


Imaging heterogeneity of membrane and storage lipids in transgenic Camelina sativa seeds with altered fatty acid profiles.

Horn PJ, Silva JE, Anderson D, Fuchs J, Borisjuk L, Nazarenus TJ, Shulaev V, Cahoon EB, Chapman KD.

Plant J. 2013 Oct;76(1):138-50. doi: 10.1111/tpj.12278. Epub 2013 Aug 5.


Functional genomics, challenges and perspectives for the future.

Mittler R, Shulaev V.

Physiol Plant. 2013 Jul;148(3):317-21. doi: 10.1111/ppl.12060. Epub 2013 May 11. No abstract available.


Development of an efficient transformation method by Agrobacterium tumefaciens and high throughput spray assay to identify transgenic plants for woodland strawberry (Fragaria vesca) using NPTII selection.

Pantazis CJ, Fisk S, Mills K, Flinn BS, Shulaev V, Veilleux RE, Dan Y.

Plant Cell Rep. 2013 Mar;32(3):329-37. doi: 10.1007/s00299-012-1366-1. Epub 2012 Nov 16.


Functional assessment of the Medicago truncatula NIP/LATD protein demonstrates that it is a high-affinity nitrate transporter.

Bagchi R, Salehin M, Adeyemo OS, Salazar C, Shulaev V, Sherrier DJ, Dickstein R.

Plant Physiol. 2012 Oct;160(2):906-16. doi: 10.1104/pp.112.196444. Epub 2012 Aug 2.


Transposon tagging in diploid strawberry.

Veilleux RE, Mills KP, Baxter AJ, Upham KT, Ferguson TJ, Holt SH, Lu N, Ruiz-Rojas JJ, Pantazis CJ, Davis CM, Lindsay RC, Powell FL, Dan Y, Dickerman AW, Oosumi T, Shulaev V.

Plant Biotechnol J. 2012 Oct;10(8):985-94. doi: 10.1111/j.1467-7652.2012.00728.x. Epub 2012 Jul 31.


Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function".

Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ.

Front Plant Sci. 2012 Feb 10;3:15. doi: 10.3389/fpls.2012.00015. eCollection 2012.


Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies.

Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Arús P, Shulaev V, Verde I, Morgante M, Rokhsar D, Velasco R, Sargent DJ.

BMC Genomics. 2012 Apr 4;13:129. doi: 10.1186/1471-2164-13-129.


Spatial mapping of lipids at cellular resolution in embryos of cotton.

Horn PJ, Korte AR, Neogi PB, Love E, Fuchs J, Strupat K, Borisjuk L, Shulaev V, Lee YJ, Chapman KD.

Plant Cell. 2012 Feb;24(2):622-36. doi: 10.1105/tpc.111.094581. Epub 2012 Feb 14.


Combination of an AccQ·Tag-ultra performance liquid chromatographic method with tandem mass spectrometry for the analysis of amino acids.

Salazar C, Armenta JM, Cortés DF, Shulaev V.

Methods Mol Biol. 2012;828:13-28. doi: 10.1007/978-1-61779-445-2_2.


Bioinformatics tools for cancer metabolomics.

Blekherman G, Laubenbacher R, Cortes DF, Mendes P, Torti FM, Akman S, Torti SV, Shulaev V.

Metabolomics. 2011 Sep;7(3):329-343. Epub 2011 Jan 12.


Respiratory burst oxidases: the engines of ROS signaling.

Suzuki N, Miller G, Morales J, Shulaev V, Torres MA, Mittler R.

Curr Opin Plant Biol. 2011 Dec;14(6):691-9. doi: 10.1016/j.pbi.2011.07.014. Epub 2011 Aug 19. Review.


Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development.

Katz E, Boo KH, Kim HY, Eigenheer RA, Phinney BS, Shulaev V, Negre-Zakharov F, Sadka A, Blumwald E.

J Exp Bot. 2011 Nov;62(15):5367-84. doi: 10.1093/jxb/err197. Epub 2011 Aug 12.



Nesterov VV, Sarkisov SS, Shulaev V, Nesterov VN.

Acta Crystallogr Sect E Struct Rep Online. 2011 Jun 1;67(Pt 6):o1505-6. doi: 10.1107/S1600536811018587. Epub 2011 May 25.



Nesterov VV, Sarkisov SS, Shulaev V, Nesterov VN.

Acta Crystallogr Sect E Struct Rep Online. 2011 Apr 1;67(Pt 4):o760-1. doi: 10.1107/S1600536811006994. Epub 2011 Mar 2.


ROS signaling: the new wave?

Mittler R, Vanderauwera S, Suzuki N, Miller G, Tognetti VB, Vandepoele K, Gollery M, Shulaev V, Van Breusegem F.

Trends Plant Sci. 2011 Jun;16(6):300-9. doi: 10.1016/j.tplants.2011.03.007. Epub 2011 Apr 7. Review.


Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress.

Cortes DF, Sha W, Hower V, Blekherman G, Laubenbacher R, Akman S, Torti SV, Shulaev V.

Free Radic Biol Med. 2011 Jun 1;50(11):1565-74. doi: 10.1016/j.freeradbiomed.2011.03.002. Epub 2011 Mar 29.


Integrated analysis of ATM mediated gene and protein expression impacting cellular metabolism.

Cheema AK, Timofeeva O, Varghese R, Dimtchev A, Shiekh K, Shulaev V, Suy S, Collins S, Ressom H, Jung M, Dritschilo A.

J Proteome Res. 2011 May 6;10(5):2651-7. doi: 10.1021/pr101243j. Epub 2011 Mar 7.


Extranuclear protection of chromosomal DNA from oxidative stress.

Vanderauwera S, Suzuki N, Miller G, van de Cotte B, Morsa S, Ravanat JL, Hegie A, Triantaphylidès C, Shulaev V, Van Montagu MC, Van Breusegem F, Mittler R.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1711-6. doi: 10.1073/pnas.1018359108. Epub 2011 Jan 10.


LC-MS-based metabolomics.

Bajad S, Shulaev V.

Methods Mol Biol. 2011;708:213-28. doi: 10.1007/978-1-61737-985-7_13.


The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.


Plant metabolomics by GC-MS and differential analysis.

Shuman JL, Cortes DF, Armenta JM, Pokrzywa RM, Mendes P, Shulaev V.

Methods Mol Biol. 2011;678:229-46. doi: 10.1007/978-1-60761-682-5_17.


Wound-healing properties of nut oil from Pouteria lucuma.

Rojo LE, Villano CM, Joseph G, Schmidt B, Shulaev V, Shuman JL, Lila MA, Raskin I.

J Cosmet Dermatol. 2010 Sep;9(3):185-95. doi: 10.1111/j.1473-2165.2010.00509.x.


Implementing reverse genetics in Rosaceae: analysis of T-DNA flanking sequences of insertional mutant lines in the diploid strawberry, Fragaria vesca.

Oosumi T, Ruiz-Rojas JJ, Veilleux RE, Dickerman A, Shulaev V.

Physiol Plant. 2010 Sep 1;140(1):1-9. doi: 10.1111/j.1399-3054.2010.01378.x. Epub 2010 Apr 28.


SNP discovery and genetic mapping of T-DNA insertional mutants in Fragaria vesca L.

Ruiz-Rojas JJ, Sargent DJ, Shulaev V, Dickerman AW, Pattison J, Holt SH, Ciordia A, Veilleux RE.

Theor Appl Genet. 2010 Aug;121(3):449-63. doi: 10.1007/s00122-010-1322-9. Epub 2010 Mar 27.


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