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Voltage-Controlled Magnetic Anisotropy in Fe1-xCox/Pd/MgO system.

Shukla AK, Goto M, Xu X, Nawaoka K, Suwardy J, Ohkubo T, Hono K, Miwa S, Suzuki Y.

Sci Rep. 2018 Jul 9;8(1):10362. doi: 10.1038/s41598-018-28445-3.


Multifunctional Activity-Based Protein Profiling of the Developing Lung.

Stoddard EG, Volk RF, Carson JP, Ljungberg CM, Murphree TA, Smith JN, Sadler NC, Shukla AK, Ansong C, Wright AT.

J Proteome Res. 2018 Jul 4. doi: 10.1021/acs.jproteome.8b00086. [Epub ahead of print]


Illuminating GPCR Signaling by Cryo-EM.

Safdari HA, Pandey S, Shukla AK, Dutta S.

Trends Cell Biol. 2018 Jun 23. pii: S0962-8924(18)30103-X. doi: 10.1016/j.tcb.2018.06.002. [Epub ahead of print]


Spatially resolved proteome mapping of laser capture microdissected tissue with automated sample transfer to nanodroplets.

Zhu Y, Dou M, Piehowski PD, Liang Y, Wang F, Chu RK, Chrisler W, Smith JN, Schwarz KC, Shen Y, Shukla AK, Moore RJ, Smith RD, Qian WJ, Kelly RT.

Mol Cell Proteomics. 2018 Jun 24. pii: mcp.TIR118.000686. doi: 10.1074/mcp.TIR118.000686. [Epub ahead of print]


Author Correction: Informed-Proteomics: open-source software package for top-down proteomics.

Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, Smith RD, Payne SH, Kim S.

Nat Methods. 2018 Jul;15(7):554. doi: 10.1038/s41592-018-0040-0.


Molecular mechanism of modulating arrestin conformation by GPCR phosphorylation.

Sente A, Peer R, Srivastava A, Baidya M, Lesk AM, Balaji S, Shukla AK, Babu MM, Flock T.

Nat Struct Mol Biol. 2018 Jun;25(6):538-545. doi: 10.1038/s41594-018-0071-3. Epub 2018 Jun 5.


Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle.

Kramer PA, Duan J, Gaffrey MJ, Shukla AK, Wang L, Bammler TK, Qian WJ, Marcinek DJ.

Redox Biol. 2018 Jul;17:367-376. doi: 10.1016/j.redox.2018.05.011. Epub 2018 May 23.


Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS.

Zhu Y, Clair G, Chrisler WB, Shen Y, Zhao R, Shukla AK, Moore RJ, Misra RS, Pryhuber GS, Smith RD, Ansong C, Kelly RT.

Angew Chem Int Ed Engl. 2018 May 24. doi: 10.1002/anie.201802843. [Epub ahead of print]


Emerging Paradigm of Intracellular Targeting of G Protein-Coupled Receptors.

Chaturvedi M, Schilling J, Beautrait A, Bouvier M, Benovic JL, Shukla AK.

Trends Biochem Sci. 2018 Jul;43(7):533-546. doi: 10.1016/j.tibs.2018.04.003. Epub 2018 May 4. Review.


Surgical management of stage III pediatric empyema thoracis.

Singh AP, Shukla AK, Sharma P, Shukla J.

Lung India. 2018 May-Jun;35(3):209-214. doi: 10.4103/lungindia.lungindia_227_17.


Perforating Calcific Elastosis: Revisiting a Rare Entity.

Lal NR, Bandyopadhyay D, Verma R, Shukla AK.

Indian J Dermatol. 2018 Mar-Apr;63(2):186-188. doi: 10.4103/ijd.IJD_111_17. No abstract available.


Cloacal Malformation Variant in a Male Neonate.

Gupta R, Sharma P, Shukla AK, Goyal M, Gupta A.

J Indian Assoc Pediatr Surg. 2018 Apr-Jun;23(2):106-108. doi: 10.4103/jiaps.JIAPS_118_17.


GPCR Signaling: The Interplay of Gαi and β-arrestin.

Dwivedi H, Baidya M, Shukla AK.

Curr Biol. 2018 Apr 2;28(7):R324-R327. doi: 10.1016/j.cub.2018.02.027.


Candidate DNA Barcode Tags Combined With High Resolution Melting (Bar-HRM) Curve Analysis for Authentication of Senna alexandrina Mill. With Validation in Crude Drugs.

Mishra P, Shukla AK, Sundaresan V.

Front Plant Sci. 2018 Mar 13;9:283. doi: 10.3389/fpls.2018.00283. eCollection 2018.


Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells.

Zhu Y, Piehowski PD, Zhao R, Chen J, Shen Y, Moore RJ, Shukla AK, Petyuk VA, Campbell-Thompson M, Mathews CE, Smith RD, Qian WJ, Kelly RT.

Nat Commun. 2018 Feb 28;9(1):882. doi: 10.1038/s41467-018-03367-w.


Altered expression of the Cdk5 activator-like protein, Cdk5α, causes neurodegeneration, in part by accelerating the rate of aging.

Spurrier J, Shukla AK, McLinden K, Johnson K, Giniger E.

Dis Model Mech. 2018 Mar 8;11(3). pii: dmm031161. doi: 10.1242/dmm.031161.


Ancient Regulatory Role of Lysine Acetylation in Central Metabolism.

Nakayasu ES, Burnet MC, Walukiewicz HE, Wilkins CS, Shukla AK, Brooks S, Plutz MJ, Lee BD, Schilling B, Wolfe AJ, Müller S, Kirby JR, Rao CV, Cort JR, Payne SH.

MBio. 2017 Nov 28;8(6). pii: e01894-17. doi: 10.1128/mBio.01894-17.


Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis.

Eisfeld AJ, Halfmann PJ, Wendler JP, Kyle JE, Burnum-Johnson KE, Peralta Z, Maemura T, Walters KB, Watanabe T, Fukuyama S, Yamashita M, Jacobs JM, Kim YM, Casey CP, Stratton KG, Webb-Robertson BM, Gritsenko MA, Monroe ME, Weitz KK, Shukla AK, Tian M, Neumann G, Reed JL, van Bakel H, Metz TO, Smith RD, Waters KM, N'jai A, Sahr F, Kawaoka Y.

Cell Host Microbe. 2017 Dec 13;22(6):817-829.e8. doi: 10.1016/j.chom.2017.10.011. Epub 2017 Nov 16.


Cellular Signalling - Special issue to celebrate 75th birthday of Prof. Robert J. Lefkowitz.

Shukla AK, Pyne NJ.

Cell Signal. 2018 Jan;41:1. doi: 10.1016/j.cellsig.2017.10.015. Epub 2017 Oct 31. No abstract available.


Character-based DNA barcoding for authentication and conservation of IUCN Red listed threatened species of genus Decalepis (Apocynaceae).

Mishra P, Kumar A, Sivaraman G, Shukla AK, Kaliamoorthy R, Slater A, Velusamy S.

Sci Rep. 2017 Nov 2;7(1):14910. doi: 10.1038/s41598-017-14887-8.


Activity-Based Probes for Isoenzyme- and Site-Specific Functional Characterization of Glutathione S-Transferases.

Stoddard EG, Killinger BJ, Nair RN, Sadler NC, Volk RF, Purvine SO, Shukla AK, Smith JN, Wright AT.

J Am Chem Soc. 2017 Nov 15;139(45):16032-16035. doi: 10.1021/jacs.7b07378. Epub 2017 Nov 1.


Kluth Type IV3 Membranous Esophageal Atresia at Middle One-third of Esophagus: An Extremely Rare Entity.

Gupta R, Sharma P, Shukla AK, Mehra S.

J Indian Assoc Pediatr Surg. 2017 Oct-Dec;22(4):254-256. doi: 10.4103/jiaps.JIAPS_263_16.


A synthetic intrabody-based selective and generic inhibitor of GPCR endocytosis.

Ghosh E, Srivastava A, Baidya M, Kumari P, Dwivedi H, Nidhi K, Ranjan R, Dogra S, Koide A, Yadav PN, Sidhu SS, Koide S, Shukla AK.

Nat Nanotechnol. 2017 Dec;12(12):1190-1198. doi: 10.1038/nnano.2017.188. Epub 2017 Oct 2.



Shukla AK.

Methods Cell Biol. 2017;142:xiii. doi: 10.1016/S0091-679X(17)30153-X. No abstract available.



Shukla AK.

Adv Immunol. 2017;136:xi-xii. doi: 10.1016/S0065-2776(17)30060-3. No abstract available.


Prevalence of dental anxiety in 10-14 years old children and its implications.

Kakkar M, Wahi A, Thakkar R, Vohra I, Shukla AK.

J Dent Anesth Pain Med. 2016 Sep;16(3):199-202. doi: 10.17245/jdapm.2016.16.3.199. Epub 2016 Sep 30.


Evaluation of single and multilocus DNA barcodes towards species delineation in complex tree genus Terminalia.

Mishra P, Kumar A, Nagireddy A, Shukla AK, Sundaresan V.

PLoS One. 2017 Aug 22;12(8):e0182836. doi: 10.1371/journal.pone.0182836. eCollection 2017.


Informed-Proteomics: open-source software package for top-down proteomics.

Park J, Piehowski PD, Wilkins C, Zhou M, Mendoza J, Fujimoto GM, Gibbons BC, Shaw JB, Shen Y, Shukla AK, Moore RJ, Liu T, Petyuk VA, Tolić N, Paša-Tolić L, Smith RD, Payne SH, Kim S.

Nat Methods. 2017 Sep;14(9):909-914. doi: 10.1038/nmeth.4388. Epub 2017 Aug 7. Erratum in: Nat Methods. 2018 Jul;15(7):554.


ISSR-Derived Species-Specific SCAR Marker for Rapid and Accurate Authentication of Ocimum tenuiflorum L.

Kumar A, Rodrigues V, Mishra P, Baskaran K, Shukla AK, Shasany AK, Sundaresan V.

Planta Med. 2018 Jan;84(2):117-122. doi: 10.1055/s-0043-116853. Epub 2017 Jul 24.


Two Stages Repair of Proximal Hypospadias: Review of 700 Cases.

Shukla AK, Singh AP, Sharma P, Shukla J.

J Indian Assoc Pediatr Surg. 2017 Jul-Sep;22(3):158-162. doi: 10.4103/0971-9261.207627.


Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.

Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T.

J Pathol. 2017 Sep;243(1):78-88. doi: 10.1002/path.4929. Epub 2017 Jul 28.


Novel Structural Insights into GPCR-β-Arrestin Interaction and Signaling.

Ranjan R, Dwivedi H, Baidya M, Kumar M, Shukla AK.

Trends Cell Biol. 2017 Nov;27(11):851-862. doi: 10.1016/j.tcb.2017.05.008. Epub 2017 Jun 23. Review.


Frozen in action: cryo-EM structure of a GPCR-G-protein complex.

Baidya M, Dwivedi H, Shukla AK.

Nat Struct Mol Biol. 2017 Jun 6;24(6):500-502. doi: 10.1038/nsmb.3418. No abstract available.


Core engagement with β-arrestin is dispensable for agonist-induced vasopressin receptor endocytosis and ERK activation.

Kumari P, Srivastava A, Ghosh E, Ranjan R, Dogra S, Yadav PN, Shukla AK.

Mol Biol Cell. 2017 Apr 15;28(8):1003-1010. doi: 10.1091/mbc.E16-12-0818. Epub 2017 Feb 22.


Distinct conformations of GPCR-β-arrestin complexes mediate desensitization, signaling, and endocytosis.

Cahill TJ 3rd, Thomsen AR, Tarrasch JT, Plouffe B, Nguyen AH, Yang F, Huang LY, Kahsai AW, Bassoni DL, Gavino BJ, Lamerdin JE, Triest S, Shukla AK, Berger B, Little J 4th, Antar A, Blanc A, Qu CX, Chen X, Kawakami K, Inoue A, Aoki J, Steyaert J, Sun JP, Bouvier M, Skiniotis G, Lefkowitz RJ.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2562-2567. doi: 10.1073/pnas.1701529114. Epub 2017 Feb 21.


Development of a nanocomposite ultrafiltration membrane based on polyphenylsulfone blended with graphene oxide.

Shukla AK, Alam J, Alhoshan M, Dass LA, Muthumareeswaran MR.

Sci Rep. 2017 Feb 3;7:41976. doi: 10.1038/srep41976.


Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung.

Dautel SE, Kyle JE, Clair G, Sontag RL, Weitz KK, Shukla AK, Nguyen SN, Kim YM, Zink EM, Luders T, Frevert CW, Gharib SA, Laskin J, Carson JP, Metz TO, Corley RA, Ansong C.

Sci Rep. 2017 Feb 1;7:40555. doi: 10.1038/srep40555.



Shukla AK.

Methods Enzymol. 2017;586:xix-xx. doi: 10.1016/S0076-6879(17)30031-9. No abstract available.


Biased Opioid Receptor Ligands: Gain without Pain.

Ranjan R, Pandey S, Shukla AK.

Trends Endocrinol Metab. 2017 Apr;28(4):247-249. doi: 10.1016/j.tem.2017.01.001. Epub 2017 Jan 16. Review.



Shukla AK.

Methods Enzymol. 2017;585:xvii-xviii. doi: 10.1016/S0076-6879(17)30018-6. No abstract available.


Methods of Screening-Purification and Antimicrobial Potentialities of Bacteriocin in Health Care.

Ahmad V, Jamal QMS, Siddiqui MU, Shukla AK, Alzohairy MA, Al Karaawi MA, Kamal MA.

Curr Drug Metab. 2017;18(9):814-830. doi: 10.2174/1389200218666170116111309.


Condyloma Acuminatum of Urinary Bladder in a Male Renal Transplant Recipient - A Diagnostic and Therapeutic Challenge.

Nambirajan A, Shukla AK, Mathur SR, Kumar H, Kumar R, Bhowmik DM, Singh A, Jain D, Sharma MC, Kaushal S.

Clin Genitourin Cancer. 2017 Aug;15(4):e739-e742. doi: 10.1016/j.clgc.2016.12.007. Epub 2017 Jan 4. No abstract available.


High-resolution ultrahigh-pressure long column reversed-phase liquid chromatography for top-down proteomics.

Shen Y, Tolić N, Piehowski PD, Shukla AK, Kim S, Zhao R, Qu Y, Robinson E, Smith RD, Paša-Tolić L.

J Chromatogr A. 2017 May 19;1498:99-110. doi: 10.1016/j.chroma.2017.01.008. Epub 2017 Jan 5.


An efficient method for native protein purification in the selected range from prostate cancer tissue digests.

Ahmad R, Nicora CD, Shukla AK, Smith RD, Qian WJ, Liu AY.

Chin Clin Oncol. 2016 Dec;5(6):78. doi: 10.21037/cco.2016.12.03.


Feasibility of nuclear ribosomal region ITS1 over ITS2 in barcoding taxonomically challenging genera of subtribe Cassiinae (Fabaceae).

Mishra P, Kumar A, Rodrigues V, Shukla AK, Sundaresan V.

PeerJ. 2016 Dec 15;4:e2638. eCollection 2016.


Editorial overview: Multi-protein assemblies in signaling.

Shukla AK, Wodak SJ.

Curr Opin Struct Biol. 2016 Dec;41:v-vii. doi: 10.1016/ Epub 2016 Nov 23. No abstract available.


Functional competence of a partially engaged GPCR-β-arrestin complex.

Kumari P, Srivastava A, Banerjee R, Ghosh E, Gupta P, Ranjan R, Chen X, Gupta B, Gupta C, Jaiman D, Shukla AK.

Nat Commun. 2016 Nov 9;7:13416. doi: 10.1038/ncomms13416.


MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.

Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO.

mSystems. 2016 May 10;1(3). pii: e00043-16. eCollection 2016 May-Jun.


Role of CTGF in Sensitivity to Hyperthermia in Ovarian and Uterine Cancers.

Hatakeyama H, Wu SY, Lyons YA, Pradeep S, Wang W, Huang Q, Court KA, Liu T, Nie S, Rodriguez-Aguayo C, Shen F, Huang Y, Hisamatsu T, Mitamura T, Jennings N, Shim J, Dorniak PL, Mangala LS, Petrillo M, Petyuk VA, Schepmoes AA, Shukla AK, Torres-Lugo M, Lee JS, Rodland KD, Fagotti A, Lopez-Berestein G, Li C, Sood AK.

Cell Rep. 2016 Nov 1;17(6):1621-1631. doi: 10.1016/j.celrep.2016.10.020.


Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.

Burnum-Johnson KE, Nie S, Casey CP, Monroe ME, Orton DJ, Ibrahim YM, Gritsenko MA, Clauss TR, Shukla AK, Moore RJ, Purvine SO, Shi T, Qian W, Liu T, Baker ES, Smith RD.

Mol Cell Proteomics. 2016 Dec;15(12):3694-3705. Epub 2016 Sep 25.

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