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Items: 1 to 50 of 91

1.

Spatio-angular fluorescence microscopy II. Paraxial 4f imaging.

Chandler T, Shroff H, Oldenbourg R, Rivière P.

J Opt Soc Am A Opt Image Sci Vis. 2019 Aug 1;36(8):1346-1360. doi: 10.1364/JOSAA.36.001346.

PMID:
31503560
2.

Spatio-angular fluorescence microscopy I. Basic theory.

Chandler T, Shroff H, Oldenbourg R, La Rivière P.

J Opt Soc Am A Opt Image Sci Vis. 2019 Aug 1;36(8):1334-1345. doi: 10.1364/JOSAA.36.001334.

PMID:
31503559
3.

Transforming the development and dissemination of cutting-edge microscopy and computation.

Colón-Ramos DA, La Riviere P, Shroff H, Oldenbourg R.

Nat Methods. 2019 Aug;16(8):667-669. doi: 10.1038/s41592-019-0475-y. No abstract available.

PMID:
31363203
4.

Author Correction: Anchoring cortical granules in the cortex ensures trafficking to the plasma membrane for post-fertilization exocytosis.

Vogt EJ, Tokuhiro K, Guo M, Dale R, Yang G, Shin SW, Movilla MJ, Shroff H, Dean J.

Nat Commun. 2019 Jun 27;10(1):2926. doi: 10.1038/s41467-019-10935-1.

5.

Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution.

Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA.

J Vis Exp. 2019 Jun 6;(148). doi: 10.3791/59533.

PMID:
31233035
6.

Anchoring cortical granules in the cortex ensures trafficking to the plasma membrane for post-fertilization exocytosis.

Vogt EJ, Tokuhiro K, Guo M, Dale R, Yang G, Shin SW, Movilla MJ, Shroff H, Dean J.

Nat Commun. 2019 May 22;10(1):2271. doi: 10.1038/s41467-019-10171-7. Erratum in: Nat Commun. 2019 Jun 27;10(1):2926.

7.

Author Correction: Faster, sharper, and deeper: structured illumination microscopy for biological imaging.

Wu Y, Shroff H.

Nat Methods. 2019 Feb;16(2):205. doi: 10.1038/s41592-018-0296-4.

PMID:
30594947
8.

An exploration of the psychometric properties of the SATAQ-4 among adolescent boys in Japan.

Yamamiya Y, Shroff H, Schaefer LM, Thompson JK, Shimai S, Ordaz DL.

Eat Behav. 2019 Jan;32:31-36. doi: 10.1016/j.eatbeh.2018.12.001. Epub 2018 Dec 6.

PMID:
30553107
9.

Faster, sharper, and deeper: structured illumination microscopy for biological imaging.

Wu Y, Shroff H.

Nat Methods. 2018 Dec;15(12):1011-1019. doi: 10.1038/s41592-018-0211-z. Epub 2018 Nov 26. Review. Erratum in: Nat Methods. 2019 Feb;16(2):205.

PMID:
30478322
10.

A Genetically Encoded Biosensor Strategy for Quantifying Non-muscle Myosin II Phosphorylation Dynamics in Living Cells and Organisms.

Markwardt ML, Snell NE, Guo M, Wu Y, Christensen R, Liu H, Shroff H, Rizzo MA.

Cell Rep. 2018 Jul 24;24(4):1060-1070.e4. doi: 10.1016/j.celrep.2018.06.088.

11.

A scheme for 3-dimensional morphological reconstruction and force inference in the early C. elegans embryo.

Xu M, Wu Y, Shroff H, Wu M, Mani M.

PLoS One. 2018 Jul 10;13(7):e0199151. doi: 10.1371/journal.pone.0199151. eCollection 2018.

12.

Single-shot super-resolution total internal reflection fluorescence microscopy.

Guo M, Chandris P, Giannini JP, Trexler AJ, Fischer R, Chen J, Vishwasrao HD, Rey-Suarez I, Wu Y, Wu X, Waterman CM, Patterson GH, Upadhyaya A, Taraska JW, Shroff H.

Nat Methods. 2018 Jun;15(6):425-428. doi: 10.1038/s41592-018-0004-4. Epub 2018 May 7.

PMID:
29735999
13.

Skin Color, Cultural Capital, and Beauty Products: An Investigation of the Use of Skin Fairness Products in Mumbai, India.

Shroff H, Diedrichs PC, Craddock N.

Front Public Health. 2018 Jan 23;5:365. doi: 10.3389/fpubh.2017.00365. eCollection 2017.

14.

Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope design.

Chandler T, Mehta S, Shroff H, Oldenbourg R, La Rivière PJ.

Opt Express. 2017 Dec 11;25(25):31309-31325. doi: 10.1364/OE.25.031309.

15.

Albumin/vaccine nanocomplexes that assemble in vivo for combination cancer immunotherapy.

Zhu G, Lynn GM, Jacobson O, Chen K, Liu Y, Zhang H, Ma Y, Zhang F, Tian R, Ni Q, Cheng S, Wang Z, Lu N, Yung BC, Wang Z, Lang L, Fu X, Jin A, Weiss ID, Vishwasrao H, Niu G, Shroff H, Klinman DM, Seder RA, Chen X.

Nat Commun. 2017 Dec 5;8(1):1954. doi: 10.1038/s41467-017-02191-y.

16.

Intertwining DNA-RNA nanocapsules loaded with tumor neoantigens as synergistic nanovaccines for cancer immunotherapy.

Zhu G, Mei L, Vishwasrao HD, Jacobson O, Wang Z, Liu Y, Yung BC, Fu X, Jin A, Niu G, Wang Q, Zhang F, Shroff H, Chen X.

Nat Commun. 2017 Nov 14;8(1):1482. doi: 10.1038/s41467-017-01386-7.

17.

Reflective imaging improves spatiotemporal resolution and collection efficiency in light sheet microscopy.

Wu Y, Kumar A, Smith C, Ardiel E, Chandris P, Christensen R, Rey-Suarez I, Guo M, Vishwasrao HD, Chen J, Tang J, Upadhyaya A, La Riviere PJ, Shroff H.

Nat Commun. 2017 Nov 13;8(1):1452. doi: 10.1038/s41467-017-01250-8.

18.

Anticipating, measuring, and minimizing MEMS mirror scan error to improve laser scanning microscopy's speed and accuracy.

Giannini JP, York AG, Shroff H.

PLoS One. 2017 Oct 3;12(10):e0185849. doi: 10.1371/journal.pone.0185849. eCollection 2017.

19.

Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation.

Kieffer-Kwon KR, Nimura K, Rao SSP, Xu J, Jung S, Pekowska A, Dose M, Stevens E, Mathe E, Dong P, Huang SC, Ricci MA, Baranello L, Zheng Y, Tomassoni Ardori F, Resch W, Stavreva D, Nelson S, McAndrew M, Casellas A, Finn E, Gregory C, St Hilaire BG, Johnson SM, Dubois W, Cosma MP, Batchelor E, Levens D, Phair RD, Misteli T, Tessarollo L, Hager G, Lakadamyali M, Liu Z, Floer M, Shroff H, Aiden EL, Casellas R.

Mol Cell. 2017 Aug 17;67(4):566-578.e10. doi: 10.1016/j.molcel.2017.07.013. Epub 2017 Aug 10.

20.

Real-time visualization of chromatin modification in isolated nuclei.

Sardo L, Lin A, Khakhina S, Beckman L, Ricon L, Elbezanti W, Jaison T, Vishwasrao H, Shroff H, Janetopoulos C, Klase ZA.

J Cell Sci. 2017 Sep 1;130(17):2926-2940. doi: 10.1242/jcs.205823. Epub 2017 Jul 25.

21.

Assessing phototoxicity in live fluorescence imaging.

Laissue PP, Alghamdi RA, Tomancak P, Reynaud EG, Shroff H.

Nat Methods. 2017 Jun 29;14(7):657-661. doi: 10.1038/nmeth.4344.

PMID:
28661494
22.

Adaptive optics improves multiphoton super-resolution imaging.

Zheng W, Wu Y, Winter P, Fischer R, Nogare DD, Hong A, McCormick C, Christensen R, Dempsey WP, Arnold DB, Zimmerberg J, Chitnis A, Sellers J, Waterman C, Shroff H.

Nat Methods. 2017 Sep;14(9):869-872. doi: 10.1038/nmeth.4337. Epub 2017 Jun 19.

PMID:
28628128
23.

mRNA quantification using single-molecule FISH in Drosophila embryos.

Trcek T, Lionnet T, Shroff H, Lehmann R.

Nat Protoc. 2017 Jul;12(7):1326-1348. doi: 10.1038/nprot.2017.030. Epub 2016 Jun 8.

24.

Visualizing Calcium Flux in Freely Moving Nematode Embryos.

Ardiel EL, Kumar A, Marbach J, Christensen R, Gupta R, Duncan W, Daniels JS, Stuurman N, Colón-Ramos D, Shroff H.

Biophys J. 2017 May 9;112(9):1975-1983. doi: 10.1016/j.bpj.2017.02.035.

25.

Fluorescence Microscopy: A Concise Guide to Current Imaging Methods.

Combs CA, Shroff H.

Curr Protoc Neurosci. 2017 Apr 10;79:2.1.1-2.1.25. doi: 10.1002/cpns.29.

PMID:
28398640
26.

Immunogenic cancer cell death selectively induced by near infrared photoimmunotherapy initiates host tumor immunity.

Ogawa M, Tomita Y, Nakamura Y, Lee MJ, Lee S, Tomita S, Nagaya T, Sato K, Yamauchi T, Iwai H, Kumar A, Haystead T, Shroff H, Choyke PL, Trepel JB, Kobayashi H.

Oncotarget. 2017 Feb 7;8(6):10425-10436. doi: 10.18632/oncotarget.14425.

27.

Correction: Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm.

Lakdawala SS, Wu Y, Wawrzusin P, Kabat J, Broadbent AJ, Lamirande EW, Fodor E, Altan-Bonnet N, Shroff H, Subbarao K.

PLoS Pathog. 2016 Dec 27;12(12):e1006121. doi: 10.1371/journal.ppat.1006121. eCollection 2016 Dec.

28.

Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy.

Wu Y, Chandris P, Winter PW, Kim EY, Jaumouillé V, Kumar A, Guo M, Leung JM, Smith C, Rey-Suarez I, Liu H, Waterman CM, Ramamurthi KS, La Riviere PJ, Shroff H.

Optica. 2016 Aug 20;3(8):897-910. Epub 2016 Aug 11.

29.

Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM).

Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H.

Biol Bull. 2016 Aug;231(1):26-39.

30.

Psychometric properties and validation of the Sociocultural Attitudes Towards Appearance Questionnaire-4 (SATAQ-4) with a sample of Japanese adolescent girls.

Yamamiya Y, Shimai S, Schaefer LM, Thompson JK, Shroff H, Sharma R, Ordaz DL.

Body Image. 2016 Dec;19:89-97. doi: 10.1016/j.bodyim.2016.08.006. Epub 2016 Sep 14.

PMID:
27636160
31.

Clustered nuclei maintain autonomy and nucleocytoplasmic ratio control in a syncytium.

Dundon SE, Chang SS, Kumar A, Occhipinti P, Shroff H, Roper M, Gladfelter AS.

Mol Biol Cell. 2016 Jul 1;27(13):2000-7. doi: 10.1091/mbc.E16-02-0129. Epub 2016 May 18.

32.

Untwisting the Caenorhabditis elegans embryo.

Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colón-Ramos DA, Bao Z, Shroff H.

Elife. 2015 Dec 3;4. pii: e10070. doi: 10.7554/eLife.10070.

33.

Drosophila germ granules are structured and contain homotypic mRNA clusters.

Trcek T, Grosch M, York A, Shroff H, Lionnet T, Lehmann R.

Nat Commun. 2015 Aug 5;6:7962. doi: 10.1038/ncomms8962.

34.

Construction of an instant structured illumination microscope.

Curd A, Cleasby A, Makowska K, York A, Shroff H, Peckham M.

Methods. 2015 Oct 15;88:37-47. doi: 10.1016/j.ymeth.2015.07.012. Epub 2015 Jul 22.

35.

Prolonged QT Risk Assessment in Antipsychotic Overdose Using the QT Nomogram.

Regina A, Su M, Shroff H, Cragun J.

Ann Emerg Med. 2015 Aug;66(2):215-6. doi: 10.1016/j.annemergmed.2015.04.016. No abstract available.

PMID:
26208736
36.

WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration.

Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z.

BMC Bioinformatics. 2015 Jun 9;16:189. doi: 10.1186/s12859-015-0627-8.

37.

Incoherent structured illumination improves optical sectioning and contrast in multiphoton super-resolution microscopy.

Winter PW, Chandris P, Fischer RS, Wu Y, Waterman CM, Shroff H.

Opt Express. 2015 Feb 23;23(4):5327-34. doi: 10.1364/OE.23.005327.

38.

Two-photon instant structured illumination microscopy improves the depth penetration of super-resolution imaging in thick scattering samples.

Winter PW, York AG, Nogare DD, Ingaramo M, Christensen R, Chitnis A, Patterson GH, Shroff H.

Optica. 2014 Sep 20;1(3):181-191.

39.

Three-dimensional photoactivated localization microscopy with genetically expressed probes.

Temprine K, York AG, Shroff H.

Methods Mol Biol. 2015;1251:231-61. doi: 10.1007/978-1-4939-2080-8_13.

40.

Dual-view plane illumination microscopy for rapid and spatially isotropic imaging.

Kumar A, Wu Y, Christensen R, Chandris P, Gandler W, McCreedy E, Bokinsky A, Colón-Ramos DA, Bao Z, McAuliffe M, Rondeau G, Shroff H.

Nat Protoc. 2014 Nov;9(11):2555-73. doi: 10.1038/nprot.2014.172. Epub 2014 Oct 9.

41.

Asymmetric division and differential gene expression during a bacterial developmental program requires DivIVA.

Eswaramoorthy P, Winter PW, Wawrzusin P, York AG, Shroff H, Ramamurthi KS.

PLoS Genet. 2014 Aug 7;10(8):e1004526. doi: 10.1371/journal.pgen.1004526. eCollection 2014 Aug.

42.

Faster fluorescence microscopy: advances in high speed biological imaging.

Winter PW, Shroff H.

Curr Opin Chem Biol. 2014 Jun;20:46-53. doi: 10.1016/j.cbpa.2014.04.008. Epub 2014 May 9. Review.

43.

Two-photon excitation improves multifocal structured illumination microscopy in thick scattering tissue.

Ingaramo M, York AG, Wawrzusin P, Milberg O, Hong A, Weigert R, Shroff H, Patterson GH.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5254-9. doi: 10.1073/pnas.1314447111. Epub 2014 Mar 24.

44.

Influenza a virus assembly intermediates fuse in the cytoplasm.

Lakdawala SS, Wu Y, Wawrzusin P, Kabat J, Broadbent AJ, Lamirande EW, Fodor E, Altan-Bonnet N, Shroff H, Subbarao K.

PLoS Pathog. 2014 Mar 6;10(3):e1003971. doi: 10.1371/journal.ppat.1003971. eCollection 2014 Mar. Erratum in: PLoS Pathog. 2016 Dec 27;12 (12 ):e1006121.

45.

Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths.

Ingaramo M, York AG, Hoogendoorn E, Postma M, Shroff H, Patterson GH.

Chemphyschem. 2014 Mar 17;15(4):794-800. doi: 10.1002/cphc.201300831. Epub 2014 Jan 16.

46.

Tools for the quantitative analysis of sedimentation boundaries detected by fluorescence optical analytical ultracentrifugation.

Zhao H, Casillas E Jr, Shroff H, Patterson GH, Schuck P.

PLoS One. 2013 Oct 18;8(10):e77245. doi: 10.1371/journal.pone.0077245. eCollection 2013.

47.

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Wu Y, Wawrzusin P, Senseney J, Fischer RS, Christensen R, Santella A, York AG, Winter PW, Waterman CM, Bao Z, Colón-Ramos DA, McAuliffe M, Shroff H.

Nat Biotechnol. 2013 Nov;31(11):1032-8. doi: 10.1038/nbt.2713. Epub 2013 Oct 13.

48.

Instant super-resolution imaging in live cells and embryos via analog image processing.

York AG, Chandris P, Nogare DD, Head J, Wawrzusin P, Fischer RS, Chitnis A, Shroff H.

Nat Methods. 2013 Nov;10(11):1122-6. doi: 10.1038/nmeth.2687. Epub 2013 Oct 6.

49.

Advanced optical imaging techniques for neurodevelopment.

Wu Y, Christensen R, Colón-Ramos D, Shroff H.

Curr Opin Neurobiol. 2013 Dec;23(6):1090-7. doi: 10.1016/j.conb.2013.06.008. Epub 2013 Jul 5. Review.

50.

Photoactivated Localization Microscopy (PALM) of adhesion complexes.

Shroff H, White H, Betzig E.

Curr Protoc Cell Biol. 2013 Mar;Chapter 4:Unit4.21. doi: 10.1002/0471143030.cb0421s58.

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