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Items: 45

1.

Naja mossambica mossambica Cobra Cardiotoxin Targets Mitochondria to Disrupt Mitochondrial Membrane Structure and Function.

Zhang B, Li F, Chen Z, Shrivastava IH, Gasanoff ES, Dagda RK.

Toxins (Basel). 2019 Mar 8;11(3). pii: E152. doi: 10.3390/toxins11030152.

2.

Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members.

Mikulska-Ruminska K, Shrivastava I, Krieger J, Zhang S, Li H, Bayır H, Wenzel SE, VanDemark AP, Kagan VE, Bahar I.

J Chem Inf Model. 2019 May 28;59(5):2496-2508. doi: 10.1021/acs.jcim.9b00006. Epub 2019 Feb 28.

3.

Empowerment of 15-Lipoxygenase Catalytic Competence in Selective Oxidation of Membrane ETE-PE to Ferroptotic Death Signals, HpETE-PE.

Anthonymuthu TS, Kenny EM, Shrivastava I, Tyurina YY, Hier ZE, Ting HC, Dar HH, Tyurin VA, Nesterova A, Amoscato AA, Mikulska-Ruminska K, Rosenbaum JC, Mao G, Zhao J, Conrad M, Kellum JA, Wenzel SE, VanDemark AP, Bahar I, Kagan VE, Bayır H.

J Am Chem Soc. 2018 Dec 26;140(51):17835-17839. doi: 10.1021/jacs.8b09913. Epub 2018 Dec 17.

PMID:
30525572
4.

Iron catalysis of lipid peroxidation in ferroptosis: Regulated enzymatic or random free radical reaction?

Stoyanovsky DA, Tyurina YY, Shrivastava I, Bahar I, Tyurin VA, Protchenko O, Jadhav S, Bolevich SB, Kozlov AV, Vladimirov YA, Shvedova AA, Philpott CC, Bayir H, Kagan VE.

Free Radic Biol Med. 2019 Mar;133:153-161. doi: 10.1016/j.freeradbiomed.2018.09.008. Epub 2018 Sep 12. Review.

PMID:
30217775
5.

Pseudomonas aeruginosa utilizes host polyunsaturated phosphatidylethanolamines to trigger theft-ferroptosis in bronchial epithelium.

Dar HH, Tyurina YY, Mikulska-Ruminska K, Shrivastava I, Ting HC, Tyurin VA, Krieger J, St Croix CM, Watkins S, Bayir E, Mao G, Armbruster CR, Kapralov A, Wang H, Parsek MR, Anthonymuthu TS, Ogunsola AF, Flitter BA, Freedman CJ, Gaston JR, Holman TR, Pilewski JM, Greenberger JS, Mallampalli RK, Doi Y, Lee JS, Bahar I, Bomberger JM, Bayır H, Kagan VE.

J Clin Invest. 2018 Oct 1;128(10):4639-4653. doi: 10.1172/JCI99490. Epub 2018 Sep 10.

6.

PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals.

Wenzel SE, Tyurina YY, Zhao J, St Croix CM, Dar HH, Mao G, Tyurin VA, Anthonymuthu TS, Kapralov AA, Amoscato AA, Mikulska-Ruminska K, Shrivastava IH, Kenny EM, Yang Q, Rosenbaum JC, Sparvero LJ, Emlet DR, Wen X, Minami Y, Qu F, Watkins SC, Holman TR, VanDemark AP, Kellum JA, Bahar I, Bayır H, Kagan VE.

Cell. 2017 Oct 19;171(3):628-641.e26. doi: 10.1016/j.cell.2017.09.044.

7.

"Only a Life Lived for Others Is Worth Living": Redox Signaling by Oxygenated Phospholipids in Cell Fate Decisions.

Tyurina YY, Shrivastava I, Tyurin VA, Mao G, Dar HH, Watkins S, Epperly M, Bahar I, Shvedova AA, Pitt B, Wenzel SE, Mallampalli RK, Sadovsky Y, Gabrilovich D, Greenberger JS, Bayır H, Kagan VE.

Antioxid Redox Signal. 2018 Nov 1;29(13):1333-1358. doi: 10.1089/ars.2017.7124. Epub 2017 Oct 16. Review.

PMID:
28835115
8.

Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis.

Zhou Z, Luo A, Shrivastava I, He M, Huang Y, Bahar I, Liu Z, Wan Y.

EBioMedicine. 2017 Feb;15:48-61. doi: 10.1016/j.ebiom.2016.12.014. Epub 2016 Dec 23.

9.

Redox-dependent regulation of hepatocyte absent in melanoma 2 inflammasome activation in sterile liver injury in mice.

Sun Q, Loughran P, Shapiro R, Shrivastava IH, Antoine DJ, Li T, Yan Z, Fan J, Billiar TR, Scott MJ.

Hepatology. 2017 Jan;65(1):253-268. doi: 10.1002/hep.28893. Epub 2016 Nov 29.

10.

Naja naja oxiana Cobra Venom Cytotoxins CTI and CTII Disrupt Mitochondrial Membrane Integrity: Implications for Basic Three-Fingered Cytotoxins.

Gasanov SE, Shrivastava IH, Israilov FS, Kim AA, Rylova KA, Zhang B, Dagda RK.

PLoS One. 2015 Jun 19;10(6):e0129248. doi: 10.1371/journal.pone.0129248. eCollection 2015.

11.

Cardiolipin externalization to the outer mitochondrial membrane acts as an elimination signal for mitophagy in neuronal cells.

Chu CT, Ji J, Dagda RK, Jiang JF, Tyurina YY, Kapralov AA, Tyurin VA, Yanamala N, Shrivastava IH, Mohammadyani D, Wang KZQ, Zhu J, Klein-Seetharaman J, Balasubramanian K, Amoscato AA, Borisenko G, Huang Z, Gusdon AM, Cheikhi A, Steer EK, Wang R, Baty C, Watkins S, Bahar I, Bayir H, Kagan VE.

Nat Cell Biol. 2013 Oct;15(10):1197-1205. doi: 10.1038/ncb2837. Epub 2013 Sep 15.

12.

Novel mutations in gB and gH circumvent the requirement for known gD Receptors in herpes simplex virus 1 entry and cell-to-cell spread.

Uchida H, Chan J, Shrivastava I, Reinhart B, Grandi P, Glorioso JC, Cohen JB.

J Virol. 2013 Feb;87(3):1430-42. doi: 10.1128/JVI.02804-12. Epub 2012 Nov 14.

13.

Spontaneous rearrangement of the β20/β21 strands in simulations of unliganded HIV-1 glycoprotein, gp120.

Shrivastava IH, Wendel K, LaLonde JM.

Biochemistry. 2012 Oct 2;51(39):7783-93. doi: 10.1021/bi300878d. Epub 2012 Sep 21.

14.

Comparative dynamics of NMDA- and AMPA-glutamate receptor N-terminal domains.

Dutta A, Shrivastava IH, Sukumaran M, Greger IH, Bahar I.

Structure. 2012 Nov 7;20(11):1838-49. doi: 10.1016/j.str.2012.08.012. Epub 2012 Sep 6.

15.

Large collective motions regulate the functional properties of glutamate transporter trimers.

Jiang J, Shrivastava IH, Watts SD, Bahar I, Amara SG.

Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15141-6. doi: 10.1073/pnas.1112216108. Epub 2011 Aug 29.

16.

Enhanced dynamics of HIV gp120 glycoprotein by small molecule binding.

Shrivastava I, LaLonde JM.

Biochemistry. 2011 May 17;50(19):4173-83. doi: 10.1021/bi2002218. Epub 2011 Apr 21.

17.

Dynamics and allosteric potential of the AMPA receptor N-terminal domain.

Sukumaran M, Rossmann M, Shrivastava I, Dutta A, Bahar I, Greger IH.

EMBO J. 2011 Mar 2;30(5):972-82. doi: 10.1038/emboj.2011.17. Epub 2011 Feb 11.

18.

The mechanism of substrate release by the aspartate transporter GltPh: insights from simulations.

DeChancie J, Shrivastava IH, Bahar I.

Mol Biosyst. 2011 Mar;7(3):832-42. doi: 10.1039/c0mb00175a. Epub 2010 Dec 15. Erratum in: Mol Biosyst. 2011 Dec;7(12):3376.

19.

Fluctuation dynamics analysis of gp120 envelope protein reveals a topologically based communication network.

Shrivastava I, LaLonde JM.

Proteins. 2010 Nov 1;78(14):2935-49. doi: 10.1002/prot.22816.

20.

Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.

Bahar I, Lezon TR, Bakan A, Shrivastava IH.

Chem Rev. 2010 Mar 10;110(3):1463-97. doi: 10.1021/cr900095e. Review. No abstract available.

21.

Molecular simulations elucidate the substrate translocation pathway in a glutamate transporter.

Gu Y, Shrivastava IH, Amara SG, Bahar I.

Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2589-94. doi: 10.1073/pnas.0812299106. Epub 2009 Feb 6.

22.

Time-resolved mechanism of extracellular gate opening and substrate binding in a glutamate transporter.

Shrivastava IH, Jiang J, Amara SG, Bahar I.

J Biol Chem. 2008 Oct 17;283(42):28680-90. doi: 10.1074/jbc.M800889200. Epub 2008 Aug 4.

23.

Common mechanism of pore opening shared by five different potassium channels.

Shrivastava IH, Bahar I.

Biophys J. 2006 Jun 1;90(11):3929-40. Epub 2006 Mar 13.

24.

A model of voltage gating developed using the KvAP channel crystal structure.

Shrivastava IH, Durell SR, Guy HR.

Biophys J. 2004 Oct;87(4):2255-70.

25.

Models of the structure and voltage-gating mechanism of the shaker K+ channel.

Durell SR, Shrivastava IH, Guy HR.

Biophys J. 2004 Oct;87(4):2116-30.

26.

A prokaryotic glutamate receptor: homology modelling and molecular dynamics simulations of GluR0.

Arinaminpathy Y, Biggin PC, Shrivastava IH, Sansom MS.

FEBS Lett. 2003 Oct 23;553(3):321-7.

27.

Potassium channels: structures, models, simulations.

Sansom MS, Shrivastava IH, Bright JN, Tate J, Capener CE, Biggin PC.

Biochim Biophys Acta. 2002 Oct 11;1565(2):294-307. Review.

28.

Conformational dynamics of helix S6 from Shaker potassium channel: simulation studies.

Bright JN, Shrivastava IH, Cordes FS, Sansom MS.

Biopolymers. 2002 Sep;64(6):303-13.

PMID:
12124848
29.

K(+) versus Na(+) ions in a K channel selectivity filter: a simulation study.

Shrivastava IH, Tieleman DP, Biggin PC, Sansom MS.

Biophys J. 2002 Aug;83(2):633-45.

30.

Molecular dynamics simulations and KcsA channel gating.

Shrivastava IH, Sansom MS.

Eur Biophys J. 2002 Jun;31(3):207-16. Epub 2002 Mar 15.

PMID:
12029333
31.

Ion channels: frozen motion.

Sansom MS, Shrivastava IH.

Curr Biol. 2002 Jan 22;12(2):R65-7. Review.

32.

DNA-immunization with a V2 deleted HIV-1 envelope elicits protective antibodies in macaques.

Cherpelis S, Jin X, Gettie A, Ho DD, Barnett SW, Shrivastava I, Stamatatos L.

Immunol Lett. 2001 Nov 1;79(1-2):47-55.

PMID:
11595289
33.

Proline-induced hinges in transmembrane helices: possible roles in ion channel gating.

Tieleman DP, Shrivastava IH, Ulmschneider MR, Sansom MS.

Proteins. 2001 Aug 1;44(2):63-72.

PMID:
11391769
34.

Potassium and sodium ions in a potassium channel studied by molecular dynamics simulations.

Biggin PC, Smith GR, Shrivastava I, Choe S, Sansom MS.

Biochim Biophys Acta. 2001 Feb 9;1510(1-2):1-9.

35.

Side-chain ionization states in a potassium channel.

Ranatunga KM, Shrivastava IH, Smith GR, Sansom MS.

Biophys J. 2001 Mar;80(3):1210-9.

37.

Simulations of ion channels--watching ions and water move.

Sansom MS, Shrivastava IH, Ranatunga KM, Smith GR.

Trends Biochem Sci. 2000 Aug;25(8):368-74. Review.

PMID:
10916155
38.

Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel.

Capener CE, Shrivastava IH, Ranatunga KM, Forrest LR, Smith GR, Sansom MS.

Biophys J. 2000 Jun;78(6):2929-42.

39.
40.

Structure and dynamics of K channel pore-lining helices: a comparative simulation study.

Shrivastava IH, Capener CE, Forrest LR, Sansom MS.

Biophys J. 2000 Jan;78(1):79-92.

41.

Adult diastematomyelia : a case report and review of literature.

Yadav YR, Bhagat M, Rahman HH, Tandon JK, Kriplani TC, Shrivastava I, Singh BP.

Neurol India. 1998 Oct-Dec;46(4):316-318.

PMID:
29508831
42.

Lattice model for rapidly folding protein-like heteropolymers.

Shrivastava I, Vishveshwara S, Cieplak M, Maritan A, Banavar JR.

Proc Natl Acad Sci U S A. 1995 Sep 26;92(20):9206-9.

43.

Initiation of translation at a UAG stop codon in the aldolase gene of Plasmodium falciparum.

Ghersa P, Shrivastava IK, Perrin LH, Döbeli H, Becherer DJ, Matile H, Meier B, Certa U.

EMBO J. 1990 May;9(5):1645-9.

44.

Use of second-moment constraints for the refinement of determinantal wave functions.

Gadre SR, Kulkarni SA, Shrivastava IH.

Phys Rev A Gen Phys. 1988 Jul 1;38(1):487-489. No abstract available.

PMID:
9900188
45.

Aldolase activity of a Plasmodium falciparum protein with protective properties.

Certa U, Ghersa P, Döbeli H, Matile H, Kocher HP, Shrivastava IK, Shaw AR, Perrin LH.

Science. 1988 May 20;240(4855):1036-8.

PMID:
3285469

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