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Items: 23

1.

The inference of sex-biased human demography from whole-genome data.

Musharoff S, Shringarpure S, Bustamante CD, Ramachandran S.

PLoS Genet. 2019 Sep 20;15(9):e1008293. doi: 10.1371/journal.pgen.1008293. eCollection 2019 Sep.

2.

Imputation-Aware Tag SNP Selection To Improve Power for Large-Scale, Multi-ethnic Association Studies.

Wojcik GL, Fuchsberger C, Taliun D, Welch R, Martin AR, Shringarpure S, Carlson CS, Abecasis G, Kang HM, Boehnke M, Bustamante CD, Gignoux CR, Kenny EE.

G3 (Bethesda). 2018 Oct 3;8(10):3255-3267. doi: 10.1534/g3.118.200502.

3.

Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort.

Waszak SM, Northcott PA, Buchhalter I, Robinson GW, Sutter C, Groebner S, Grund KB, Brugières L, Jones DTW, Pajtler KW, Morrissy AS, Kool M, Sturm D, Chavez L, Ernst A, Brabetz S, Hain M, Zichner T, Segura-Wang M, Weischenfeldt J, Rausch T, Mardin BR, Zhou X, Baciu C, Lawerenz C, Chan JA, Varlet P, Guerrini-Rousseau L, Fults DW, Grajkowska W, Hauser P, Jabado N, Ra YS, Zitterbart K, Shringarpure SS, De La Vega FM, Bustamante CD, Ng HK, Perry A, MacDonald TJ, Hernáiz Driever P, Bendel AE, Bowers DC, McCowage G, Chintagumpala MM, Cohn R, Hassall T, Fleischhack G, Eggen T, Wesenberg F, Feychting M, Lannering B, Schüz J, Johansen C, Andersen TV, Röösli M, Kuehni CE, Grotzer M, Kjaerheim K, Monoranu CM, Archer TC, Duke E, Pomeroy SL, Shelagh R, Frank S, Sumerauer D, Scheurlen W, Ryzhova MV, Milde T, Kratz CP, Samuel D, Zhang J, Solomon DA, Marra M, Eils R, Bartram CR, von Hoff K, Rutkowski S, Ramaswamy V, Gilbertson RJ, Korshunov A, Taylor MD, Lichter P, Malkin D, Gajjar A, Korbel JO, Pfister SM.

Lancet Oncol. 2018 Jun;19(6):785-798. doi: 10.1016/S1470-2045(18)30242-0. Epub 2018 May 9.

4.

Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.

Raisaro JL, Tramèr F, Ji Z, Bu D, Zhao Y, Carey K, Lloyd D, Sofia H, Baker D, Flicek P, Shringarpure S, Bustamante C, Wang S, Jiang X, Ohno-Machado L, Tang H, Wang X, Hubaux JP.

J Am Med Inform Assoc. 2017 Jul 1;24(4):799-805. doi: 10.1093/jamia/ocw167.

5.

Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.

Shringarpure SS, Mathias RA, Hernandez RD, O'Connor TD, Szpiech ZA, Torres R, De La Vega FM, Bustamante CD, Barnes KC, Taub MA; CAAPA Consortium.

Bioinformatics. 2017 Apr 15;33(8):1147-1153. doi: 10.1093/bioinformatics/btw786.

6.

A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome.

Mathias RA, Taub MA, Gignoux CR, Fu W, Musharoff S, O'Connor TD, Vergara C, Torgerson DG, Pino-Yanes M, Shringarpure SS, Huang L, Rafaels N, Boorgula MP, Johnston HR, Ortega VE, Levin AM, Song W, Torres R, Padhukasahasram B, Eng C, Mejia-Mejia DA, Ferguson T, Qin ZS, Scott AF, Yazdanbakhsh M, Wilson JG, Marrugo J, Lange LA, Kumar R, Avila PC, Williams LK, Watson H, Ware LB, Olopade C, Olopade O, Oliveira R, Ober C, Nicolae DL, Meyers D, Mayorga A, Knight-Madden J, Hartert T, Hansel NN, Foreman MG, Ford JG, Faruque MU, Dunston GM, Caraballo L, Burchard EG, Bleecker E, Araujo MI, Herrera-Paz EF, Gietzen K, Grus WE, Bamshad M, Bustamante CD, Kenny EE, Hernandez RD, Beaty TH, Ruczinski I, Akey J; CAAPA, Barnes KC.

Nat Commun. 2016 Oct 11;7:12522. doi: 10.1038/ncomms12522.

7.

The Great Migration and African-American Genomic Diversity.

Baharian S, Barakatt M, Gignoux CR, Shringarpure S, Errington J, Blot WJ, Bustamante CD, Kenny EE, Williams SM, Aldrich MC, Gravel S.

PLoS Genet. 2016 May 27;12(5):e1006059. doi: 10.1371/journal.pgen.1006059. eCollection 2016 May.

8.

Efficient analysis of large datasets and sex bias with ADMIXTURE.

Shringarpure SS, Bustamante CD, Lange K, Alexander DH.

BMC Bioinformatics. 2016 May 23;17:218. doi: 10.1186/s12859-016-1082-x.

9.

Privacy Risks from Genomic Data-Sharing Beacons.

Shringarpure SS, Bustamante CD.

Am J Hum Genet. 2015 Nov 5;97(5):631-46. doi: 10.1016/j.ajhg.2015.09.010. Epub 2015 Oct 29.

10.

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, de Barros Damgaard P, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CPE, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E.

Science. 2015 Aug 21;349(6250):aab3884. doi: 10.1126/science.aab3884. Epub 2015 Jul 21.

11.

Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes.

Shringarpure SS, Carroll A, De La Vega FM, Bustamante CD.

PLoS One. 2015 Jun 25;10(6):e0129277. doi: 10.1371/journal.pone.0129277. eCollection 2015.

12.

Effects of sample selection bias on the accuracy of population structure and ancestry inference.

Shringarpure S, Xing EP.

G3 (Bethesda). 2014 Mar 17;4(5):901-11. doi: 10.1534/g3.113.007633.

13.

A case of primitive neuroectodermal tumor of the kidney and review of the literature.

Shringarpure SS, Venkatraman M, Raja T, Mani R.

Indian J Pathol Microbiol. 2012 Oct-Dec;55(4):587-8. doi: 10.4103/0377-4929.107837. Review. No abstract available.

14.

PEComa of the urinary bladder.

Shringarpure SS, Thachil JV, Maya M.

Saudi J Kidney Dis Transpl. 2012 Sep;23(5):1032-4. doi: 10.4103/1319-2442.100943.

15.

A case of primary extraosseous penile osteosarcoma and review of the literature.

Shringarpure SS, Kumar A, Shankar S, Menon M.

Indian J Urol. 2012 Jan;28(1):102-4. doi: 10.4103/0970-1591.94969.

16.

A case of signet ring cell adenocarcinoma of the bladder with spontaneous urinary extravasation.

Shringarpure SS, Thachil JV, Raja T, Mani R.

Indian J Urol. 2011 Jul;27(3):401-3. doi: 10.4103/0970-1591.85449.

17.

StructHDP: automatic inference of number of clusters and population structure from admixed genotype data.

Shringarpure S, Won D, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):i324-32. doi: 10.1093/bioinformatics/btr242.

18.

Reconceptualizing the classification of PNAS articles.

Airoldi EM, Erosheva EA, Fienberg SE, Joutard C, Love T, Shringarpure S.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20899-904. doi: 10.1073/pnas.1013452107. Epub 2010 Nov 15.

19.

Castleman's disease: A rare differential diagnosis for retroperitoneal tumors.

Shringarpure S, Sivaraman PB, Parmeswaran A.

Urol Ann. 2010 Jan;2(1):44-5. doi: 10.4103/0974-7796.62912. No abstract available.

20.

mStruct: inference of population structure in light of both genetic admixing and allele mutations.

Shringarpure S, Xing EP.

Genetics. 2009 Jun;182(2):575-93. doi: 10.1534/genetics.108.100222. Epub 2009 Apr 10.

21.

CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing.

Ray P, Shringarpure S, Kolar M, Xing EP.

PLoS Comput Biol. 2008 Jun 6;4(6):e1000090. doi: 10.1371/journal.pcbi.1000090.

22.

A solution conformation analysis of forocidins I and isoforocidins I using NMR and molecular modeling.

Ramu K, Shringarpure S, Williamson JS.

Pharm Res. 1995 Apr;12(4):621-9. No abstract available.

PMID:
7597002
23.

1H-NMR and 13C-NMR spectral assignments of spiramycins I and III.

Ramu K, Shringarpure S, Cooperwood S, Beale JM, Williams JS.

Pharm Res. 1994 Mar;11(3):458-65. No abstract available.

PMID:
8008717

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