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Items: 1 to 50 of 75

1.

Phylodynamic theory of persistence, extinction and speciation of rapidly adapting pathogens.

Yan L, Neher RA, Shraiman BI.

Elife. 2019 Sep 18;8. pii: e44205. doi: 10.7554/eLife.44205. [Epub ahead of print]

2.

Active Tension Network model suggests an exotic mechanical state realized in epithelial tissues.

Noll N, Mani M, Heemskerk I, Streichan SJ, Shraiman BI.

Nat Phys. 2017 Dec;13(12):1221-1226. doi: 10.1038/nphys4219. Epub 2017 Aug 7.

3.

Global morphogenetic flow is accurately predicted by the spatial distribution of myosin motors.

Streichan SJ, Lefebvre MF, Noll N, Wieschaus EF, Shraiman BI.

Elife. 2018 Feb 9;7. pii: e27454. doi: 10.7554/eLife.27454.

4.

Mechanical control of growth: ideas, facts and challenges.

Irvine KD, Shraiman BI.

Development. 2017 Dec 1;144(23):4238-4248. doi: 10.1242/dev.151902. Review.

5.

Inferring Cell-State Transition Dynamics from Lineage Trees and Endpoint Single-Cell Measurements.

Hormoz S, Singer ZS, Linton JM, Antebi YE, Shraiman BI, Elowitz MB.

Cell Syst. 2016 Nov 23;3(5):419-433.e8. doi: 10.1016/j.cels.2016.10.015.

6.

Differential growth triggers mechanical feedback that elevates Hippo signaling.

Pan Y, Heemskerk I, Ibar C, Shraiman BI, Irvine KD.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E6974-E6983. doi: 10.1073/pnas.1615012113. Epub 2016 Oct 26.

7.

Leaf growth is conformal.

Alim K, Armon S, Shraiman BI, Boudaoud A.

Phys Biol. 2016 Sep 6;13(5):05LT01. doi: 10.1088/1478-3975/13/5/05LT01.

PMID:
27597439
8.

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses.

Neher RA, Bedford T, Daniels RS, Russell CA, Shraiman BI.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1701-9. doi: 10.1073/pnas.1525578113. Epub 2016 Mar 7.

9.

Inferring epigenetic dynamics from kin correlations.

Hormoz S, Desprat N, Shraiman BI.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):E2281-9. doi: 10.1073/pnas.1504407112. Epub 2015 Apr 22.

10.

Predicting evolution from the shape of genealogical trees.

Neher RA, Russell CA, Shraiman BI.

Elife. 2014 Nov 11;3. doi: 10.7554/eLife.03568.

11.

How to infer relative fitness from a sample of genomic sequences.

Dayarian A, Shraiman BI.

Genetics. 2014 Jul;197(3):913-23. doi: 10.1534/genetics.113.160986. Epub 2014 Apr 26.

12.

Collective polarization model for gradient sensing via Dachsous-Fat intercellular signaling.

Mani M, Goyal S, Irvine KD, Shraiman BI.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20420-5. doi: 10.1073/pnas.1307459110. Epub 2013 Nov 26.

13.

Coalescence and genetic diversity in sexual populations under selection.

Neher RA, Kessinger TA, Shraiman BI.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15836-41. doi: 10.1073/pnas.1309697110. Epub 2013 Sep 9.

14.

Dynamic mutation-selection balance as an evolutionary attractor.

Goyal S, Balick DJ, Jerison ER, Neher RA, Shraiman BI, Desai MM.

Genetics. 2012 Aug;191(4):1309-19. doi: 10.1534/genetics.112.141291. Epub 2012 Jun 1.

15.

Fluctuations of fitness distributions and the rate of Muller's ratchet.

Neher RA, Shraiman BI.

Genetics. 2012 Aug;191(4):1283-93. doi: 10.1534/genetics.112.141325. Epub 2012 May 29.

16.

Mechanical stress inference for two dimensional cell arrays.

Chiou KK, Hufnagel L, Shraiman BI.

PLoS Comput Biol. 2012;8(5):e1002512. doi: 10.1371/journal.pcbi.1002512. Epub 2012 May 17.

17.

Collective and single cell behavior in epithelial contact inhibition.

Puliafito A, Hufnagel L, Neveu P, Streichan S, Sigal A, Fygenson DK, Shraiman BI.

Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):739-44. doi: 10.1073/pnas.1007809109. Epub 2012 Jan 6.

18.

A dynamical model of ommatidial crystal formation.

Lubensky DK, Pennington MW, Shraiman BI, Baker NE.

Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11145-50. doi: 10.1073/pnas.1015302108. Epub 2011 Jun 20.

19.

Genetic draft and quasi-neutrality in large facultatively sexual populations.

Neher RA, Shraiman BI.

Genetics. 2011 Aug;188(4):975-96. doi: 10.1534/genetics.111.128876. Epub 2011 May 30.

20.

Correlated evolution of nearby residues in Drosophilid proteins.

Callahan B, Neher RA, Bachtrog D, Andolfatto P, Shraiman BI.

PLoS Genet. 2011 Feb;7(2):e1001315. doi: 10.1371/journal.pgen.1001315. Epub 2011 Feb 24.

21.

MicroRNA profiling reveals two distinct p53-related human pluripotent stem cell states.

Neveu P, Kye MJ, Qi S, Buchholz DE, Clegg DO, Sahin M, Park IH, Kim KS, Daley GQ, Kornblum HI, Shraiman BI, Kosik KS.

Cell Stem Cell. 2010 Dec 3;7(6):671-81. doi: 10.1016/j.stem.2010.11.012.

22.

Order and stochastic dynamics in Drosophila planar cell polarity.

Burak Y, Shraiman BI.

PLoS Comput Biol. 2009 Dec;5(12):e1000628. doi: 10.1371/journal.pcbi.1000628. Epub 2009 Dec 24.

23.

Rate of adaptation in large sexual populations.

Neher RA, Shraiman BI, Fisher DS.

Genetics. 2010 Feb;184(2):467-81. doi: 10.1534/genetics.109.109009. Epub 2009 Nov 30.

24.

Emergent gene order in a model of modular polyketide synthases.

Callahan B, Thattai M, Shraiman BI.

Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19410-5. doi: 10.1073/pnas.0902364106. Epub 2009 Oct 28.

25.

Competition between recombination and epistasis can cause a transition from allele to genotype selection.

Neher RA, Shraiman BI.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6866-71. doi: 10.1073/pnas.0812560106. Epub 2009 Apr 6.

26.

Systems analysis of the single photon response in invertebrate photoreceptors.

Pumir A, Graves J, Ranganathan R, Shraiman BI.

Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10354-9. doi: 10.1073/pnas.0711884105. Epub 2008 Jul 24.

27.

The origins of specificity in polyketide synthase protein interactions.

Thattai M, Burak Y, Shraiman BI.

PLoS Comput Biol. 2007 Sep;3(9):1827-35.

28.

On the mechanism of wing size determination in fly development.

Hufnagel L, Teleman AA, Rouault H, Cohen SM, Shraiman BI.

Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):3835-40. Epub 2007 Feb 28.

29.

'Infotaxis' as a strategy for searching without gradients.

Vergassola M, Villermaux E, Shraiman BI.

Nature. 2007 Jan 25;445(7126):406-9.

PMID:
17251974
30.

On the role of glypicans in the process of morphogen gradient formation.

Hufnagel L, Kreuger J, Cohen SM, Shraiman BI.

Dev Biol. 2006 Dec 15;300(2):512-22. Epub 2006 Sep 19.

31.

Mechanical feedback as a possible regulator of tissue growth.

Shraiman BI.

Proc Natl Acad Sci U S A. 2005 Mar 1;102(9):3318-23. Epub 2005 Feb 22.

32.

G-protein-coupled enzyme cascades have intrinsic properties that improve signal localization and fidelity.

Ramanathan S, Detwiler PB, Sengupta AM, Shraiman BI.

Biophys J. 2005 May;88(5):3063-71. Epub 2005 Jan 28.

33.

Multistability in the lactose utilization network of Escherichia coli.

Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A.

Nature. 2004 Feb 19;427(6976):737-40.

PMID:
14973486
34.

A biophysical approach to transcription factor binding site discovery.

Djordjevic M, Sengupta AM, Shraiman BI.

Genome Res. 2003 Nov;13(11):2381-90.

35.
36.

Olfactory search at high Reynolds number.

Balkovsky E, Shraiman BI.

Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12589-93. Epub 2002 Sep 12.

37.

Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics.

Ronen M, Rosenberg R, Shraiman BI, Alon U.

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10555-60. Epub 2002 Jul 26.

38.

Specificity and robustness in transcription control networks.

Sengupta AM, Djordjevic M, Shraiman BI.

Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):2072-7.

39.

Geometry of Lagrangian dispersion in turbulence.

Pumir A, Shraiman BI, Chertkov M.

Phys Rev Lett. 2000 Dec 18;85(25):5324-7.

PMID:
11135987
40.

Engineering aspects of enzymatic signal transduction: photoreceptors in the retina.

Detwiler PB, Ramanathan S, Sengupta A, Shraiman BI.

Biophys J. 2000 Dec;79(6):2801-17.

41.

Scalar turbulence

Shraiman BI, Siggia ED.

Nature. 2000 Jun 8;405(6787):639-46.

PMID:
10864314
42.

Towards the clarity limit in optical fibre

Thomas GA, Shraiman BI, Glodis PF, Stephens MJ.

Nature. 2000 Mar 16;404(6775):262-4.

PMID:
10749203
43.

Assembly of ordered colloidal aggregrates by electric-field-induced fluid flow.

Yeh SR, Seul M, Shraiman BI.

Nature. 1997 Mar 6;386(6620):57-59. doi: 10.1038/386057a0.

44.
45.

Symmetry and Scaling of Turbulent Mixing.

Shraiman BI, Siggia ED.

Phys Rev Lett. 1996 Sep 16;77(12):2463-2466. No abstract available.

PMID:
10061960
46.

Fermi-liquid-to-polaron crossover. II. Double exchange and the physics of colossal magnetoresistance.

Millis AJ, Mueller R, Shraiman BI.

Phys Rev B Condens Matter. 1996 Aug 15;54(8):5405-5417. No abstract available.

PMID:
9986499
47.

Fermi-liquid-to-polaron crossover. I. General results.

Millis AJ, Mueller R, Shraiman BI.

Phys Rev B Condens Matter. 1996 Aug 15;54(8):5389-5404. No abstract available.

PMID:
9986498
48.

Dynamic Jahn-Teller Effect and Colossal Magnetoresistance in La 1-xSrxMnO3.

Millis AJ, Shraiman BI, Mueller R.

Phys Rev Lett. 1996 Jul 1;77(1):175-178. No abstract available.

PMID:
10061800
49.

Persistent small scale anisotropy in homogeneous shear flows.

Pumir A, Shraiman BI.

Phys Rev Lett. 1995 Oct 23;75(17):3114-3117. No abstract available.

PMID:
10059498
50.

Double exchange alone does not explain the resistivity of La1-xSrxMnO3.

Millis AJ, Littlewood PB, Shraiman BI.

Phys Rev Lett. 1995 Jun 19;74(25):5144-5147. No abstract available.

PMID:
10058694

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