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Items: 46

1.

A Gene Expression Classifier from Whole Blood Distinguishes Benign from Malignant Lung Nodules Detected by Low-Dose CT.

Kossenkov AV, Qureshi R, Dawany NB, Wickramasinghe J, Liu Q, Majumdar RS, Chang C, Widura S, Kumar T, Horng WH, Konnisto E, Criner G, Tsay JJ, Pass H, Yendamuri S, Vachani A, Bauer T, Nam B, Rom WN, Showe MK, Showe LC.

Cancer Res. 2019 Jan 1;79(1):263-273. doi: 10.1158/0008-5472.CAN-18-2032. Epub 2018 Nov 28.

PMID:
30487137
2.

Comparative functional genomics of adaptation to muscular disuse in hibernating mammals.

Fedorov VB, Goropashnaya AV, Stewart NC, Tøien Ø, Chang C, Wang H, Yan J, Showe LC, Showe MK, Barnes BM.

Mol Ecol. 2014 Nov;23(22):5524-37. doi: 10.1111/mec.12963. Epub 2014 Nov 3.

3.

Retraction: Sp100 as a potent tumor suppressor: accelerated senescence and rapid malignant transformation of human fibroblasts through modulation of an embryonic stem cell program.

Negorev DG, Vladimirova OV, Kossenkov AV, Demarest RM, Showe MK, Rauscher FJ 3rd, Showe LC, Nikonova EV, Capobianco AJ.

Cancer Res. 2013 Aug 1;73(15):4960-1. doi: 10.1158/0008-5472.CAN-13-1715. No abstract available.

4.

The peripheral immune response and lung cancer prognosis.

Showe MK, Kossenkov AV, Showe LC.

Oncoimmunology. 2012 Nov 1;1(8):1414-1416.

5.

Peripheral immune cell gene expression predicts survival of patients with non-small cell lung cancer.

Kossenkov AV, Dawany N, Evans TL, Kucharczuk JC, Albelda SM, Showe LC, Showe MK, Vachani A.

PLoS One. 2012;7(3):e34392. doi: 10.1371/journal.pone.0034392. Epub 2012 Mar 29.

6.

Genome-wide maps of circulating miRNA biomarkers for ulcerative colitis.

Duttagupta R, DiRienzo S, Jiang R, Bowers J, Gollub J, Kao J, Kearney K, Rudolph D, Dawany NB, Showe MK, Stamato T, Getts RC, Jones KW.

PLoS One. 2012;7(2):e31241. doi: 10.1371/journal.pone.0031241. Epub 2012 Feb 16.

7.

Preservation of bone mass and structure in hibernating black bears (Ursus americanus) through elevated expression of anabolic genes.

Fedorov VB, Goropashnaya AV, Tøien Ø, Stewart NC, Chang C, Wang H, Yan J, Showe LC, Showe MK, Donahue SW, Barnes BM.

Funct Integr Genomics. 2012 Jun;12(2):357-65. doi: 10.1007/s10142-012-0266-3. Epub 2012 Feb 18.

8.

Resection of non-small cell lung cancers reverses tumor-induced gene expression changes in the peripheral immune system.

Kossenkov AV, Vachani A, Chang C, Nichols C, Billouin S, Horng W, Rom WN, Albelda SM, Showe MK, Showe LC.

Clin Cancer Res. 2011 Sep 15;17(18):5867-77. doi: 10.1158/1078-0432.CCR-11-0737. Epub 2011 Aug 1.

9.

Modulation of gene expression in heart and liver of hibernating black bears (Ursus americanus).

Fedorov VB, Goropashnaya AV, Tøien Ø, Stewart NC, Chang C, Wang H, Yan J, Showe LC, Showe MK, Barnes BM.

BMC Genomics. 2011 Mar 31;12:171. doi: 10.1186/1471-2164-12-171.

10.

Sp100 as a potent tumor suppressor: accelerated senescence and rapid malignant transformation of human fibroblasts through modulation of an embryonic stem cell program.

Negorev DG, Vladimirova OV, Kossenkov AV, Nikonova EV, Demarest RM, Capobianco AJ, Showe MK, Rauscher FJ 3rd, Showe LC, Maul GG.

Cancer Res. 2010 Dec 1;70(23):9991-10001. doi: 10.1158/0008-5472.CAN-10-1483. Epub 2010 Nov 30. Retraction in: Negorev DG, Vladimirova OV, Kossenkov AV, Demarest RM, Showe MK, Rauscher FJ 3rd, Showe LC, Nikonova EV, Capobianco AJ. Cancer Res. 2013 Aug 1;73(15):4960-1.

11.

Gene expression profiles in peripheral blood mononuclear cells can distinguish patients with non-small cell lung cancer from patients with nonmalignant lung disease.

Showe MK, Vachani A, Kossenkov AV, Yousef M, Nichols C, Nikonova EV, Chang C, Kucharczuk J, Tran B, Wakeam E, Yie TA, Speicher D, Rom WN, Albelda S, Showe LC.

Cancer Res. 2009 Dec 15;69(24):9202-10. doi: 10.1158/0008-5472.CAN-09-1378.

12.

Classification and biomarker identification using gene network modules and support vector machines.

Yousef M, Ketany M, Manevitz L, Showe LC, Showe MK.

BMC Bioinformatics. 2009 Oct 15;10:337. doi: 10.1186/1471-2105-10-337.

13.

Elevated expression of protein biosynthesis genes in liver and muscle of hibernating black bears (Ursus americanus).

Fedorov VB, Goropashnaya AV, Tøien Ø, Stewart NC, Gracey AY, Chang C, Qin S, Pertea G, Quackenbush J, Showe LC, Showe MK, Boyer BB, Barnes BM.

Physiol Genomics. 2009 Apr 10;37(2):108-18. doi: 10.1152/physiolgenomics.90398.2008. Epub 2009 Feb 24.

14.

Learning from positive examples when the negative class is undetermined--microRNA gene identification.

Yousef M, Jung S, Showe LC, Showe MK.

Algorithms Mol Biol. 2008 Jan 28;3:2. doi: 10.1186/1748-7188-3-2.

15.

Naïve Bayes for microRNA target predictions--machine learning for microRNA targets.

Yousef M, Jung S, Kossenkov AV, Showe LC, Showe MK.

Bioinformatics. 2007 Nov 15;23(22):2987-92. Epub 2007 Oct 8.

PMID:
17925304
16.

A 10-gene classifier for distinguishing head and neck squamous cell carcinoma and lung squamous cell carcinoma.

Vachani A, Nebozhyn M, Singhal S, Alila L, Wakeam E, Muschel R, Powell CA, Gaffney P, Singh B, Brose MS, Litzky LA, Kucharczuk J, Kaiser LR, Marron JS, Showe MK, Albelda SM, Showe LC.

Clin Cancer Res. 2007 May 15;13(10):2905-15.

17.

Recursive cluster elimination (RCE) for classification and feature selection from gene expression data.

Yousef M, Jung S, Showe LC, Showe MK.

BMC Bioinformatics. 2007 May 2;8:144.

18.

Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier.

Yousef M, Nebozhyn M, Shatkay H, Kanterakis S, Showe LC, Showe MK.

Bioinformatics. 2006 Jun 1;22(11):1325-34. Epub 2006 Mar 16.

PMID:
16543277
19.

Detection of differential gene expression in brown adipose tissue of hibernating arctic ground squirrels with mouse microarrays.

Yan J, Burman A, Nichols C, Alila L, Showe LC, Showe MK, Boyer BB, Barnes BM, Marr TG.

Physiol Genomics. 2006 Apr 13;25(2):346-53. Epub 2006 Feb 7.

PMID:
16464973
20.

Quantitative PCR on 5 genes reliably identifies CTCL patients with 5% to 99% circulating tumor cells with 90% accuracy.

Nebozhyn M, Loboda A, Kari L, Rook AH, Vonderheid EC, Lessin S, Berger C, Edelson R, Nichols C, Yousef M, Gudipati L, Shang M, Showe MK, Showe LC.

Blood. 2006 Apr 15;107(8):3189-96. Epub 2006 Jan 10.

21.

Analysis of genomic targets reveals complex functions of MYC.

Patel JH, Loboda AP, Showe MK, Showe LC, McMahon SB.

Nat Rev Cancer. 2004 Jul;4(7):562-8. doi: 10.1038/nrc1393. Review. No abstract available.

PMID:
15229481
22.

Infection of U937 monocytic cells with Chlamydia pneumoniae induces extensive changes in host cell gene expression.

Virok D, Loboda A, Kari L, Nebozhyn M, Chang C, Nichols C, Endresz V, Gonczol E, Berencsi K, Showe MK, Showe LC.

J Infect Dis. 2003 Nov 1;188(9):1310-21. Epub 2003 Oct 13.

PMID:
14593587
23.

Classification and prediction of survival in patients with the leukemic phase of cutaneous T cell lymphoma.

Kari L, Loboda A, Nebozhyn M, Rook AH, Vonderheid EC, Nichols C, Virok D, Chang C, Horng WH, Johnston J, Wysocka M, Showe MK, Showe LC.

J Exp Med. 2003 Jun 2;197(11):1477-88.

24.

Structure of the mouse IL-12R beta 1 chain and regulation of its expression in BCG/LPS-treated mice.

Showe LC, Wysocka M, Wang B, Lineman-Williams D, Peritt D, Showe MK, Trinchieri G.

Ann N Y Acad Sci. 1996 Oct 31;795:413-5. No abstract available.

PMID:
8958970
25.

Quantitation of transient gene expression.

Showe MK, Showe LC.

Methods Mol Biol. 1995;48:211-24. No abstract available.

PMID:
8528393
26.

An MboI RFLP in the human erythrocyte surface protein band 3-like 1 gene (EPB3L1) on chromosome 7q35-7q36.

Showe MK, Williams D, Showe LC.

Hum Mol Genet. 1993 Mar;2(3):337. No abstract available.

PMID:
8098982
27.

Quantitation of transient gene expression after electroporation.

Showe MK, Williams DL, Showe LC.

Nucleic Acids Res. 1992 Jun 25;20(12):3153-7.

28.

Structural changes during the transformation of bacteriophage T4 polyheads. II. Evidence that a conformational change in the major capsid protein precedes the expansion.

Kistler J, Showe MK, Carrascosa JL, Stirmer B, Onorato-Showe L.

J Mol Biol. 1982 Dec 15;162(3):607-22. No abstract available.

PMID:
7166758
29.
30.

Gene 67, a new, essential bacteriophage T4 head gene codes for a prehead core component, PIP. I. Genetic mapping and DNA sequence.

Völker TA, Gafner J, Bickle TA, Showe MK.

J Mol Biol. 1982 Nov 15;161(4):479-89. No abstract available.

PMID:
7154087
31.
32.
33.
34.

Kinetic factors and form determination of the head of bacteriophage T4.

Showe MK, Onorato L.

Proc Natl Acad Sci U S A. 1978 Sep;75(9):4165-9.

35.

Isolation and characterization of bacteriophage T4 mutant preheads.

Onorato L, Stirmer B, Showe MK.

J Virol. 1978 Aug;27(2):409-26.

36.

New method for localizing proteins in periodic structures: Fab fragment labeling combined with image processing of electron micrographs.

Aebi U, ten Heggeler B, Onorato L, Kistler J, Showe MK.

Proc Natl Acad Sci U S A. 1977 Dec;74(12):5514-18.

37.

Localization of minor protein components of the head of bacteriophage T4.

Müller-Salamin L, Onorato L, Showe MK.

J Virol. 1977 Oct;24(1):121-34.

38.

Bacteriophage T4 prehead proteinase. II. Its cleavage from the product of gene 21 and regulation in phage-infected cells.

Showe MK, Isobe E, Onorato L.

J Mol Biol. 1976 Oct 15;107(1):55-69. No abstract available.

PMID:
1003460
39.

Bacteriophage T4 prehead proteinase. I. Purification and properties of a bacteriophage enzyme which cleaves the capsid precursor proteins.

Showe MK, Isobe E, Onorato L.

J Mol Biol. 1976 Oct 15;107(1):35-54. No abstract available.

PMID:
12371
40.

Structure of T4 polyheads. II. A pathway of polyhead transformation as a model for T4 capsid maturation.

Steven AC, Couture E, Aebi U, Showe MK.

J Mol Biol. 1976 Sep 5;106(1):187-221. No abstract available.

PMID:
972397
41.

Folding and capsomere morphology of the P23 surface shell of bacteriophage T4 polyheads from mutants in five different head genes.

Steven AC, Aebi U, Showe MK.

J Mol Biol. 1976 Apr 15;102(3):373-400. No abstract available.

PMID:
775106
42.

Protein cleavage during virus assembly: characterization of cleavage in T4 phage.

Tsugita A, Black LW, Showe MK.

J Mol Biol. 1975 Oct 15;98(1):217-5. No abstract available.

PMID:
1195380
43.

Gene 21 protein-dependent proteolysis in vitro of purified gene 22 product of bacteriophage T4.

Onorato L, Showe MK.

J Mol Biol. 1975 Mar 5;92(3):395-412. No abstract available.

PMID:
238040
44.

Assembly core of bacteriophage T4: an intermediate in head formation.

Showe MK, Black LW.

Nat New Biol. 1973 Mar 21;242(116):70-5. No abstract available.

PMID:
4512235
45.
46.

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