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Items: 1 to 50 of 160

1.

A role of nitrite reductase (NirBD) for NO homeostatic regulation in Streptomyces coelicolor A3(2).

Yukioka Y, Tanahashi T, Shida K, Oguchi H, Ogawa S, Saito C, Yajima S, Ito S, Ohsawa K, Shoun H, Sasaki Y.

FEMS Microbiol Lett. 2017 Jan;364(1). pii: fnw241. doi: 10.1093/femsle/fnw241. Epub 2016 Oct 18.

PMID:
27797866
2.

Nitrogen oxide cycle regulates nitric oxide levels and bacterial cell signaling.

Sasaki Y, Oguchi H, Kobayashi T, Kusama S, Sugiura R, Moriya K, Hirata T, Yukioka Y, Takaya N, Yajima S, Ito S, Okada K, Ohsawa K, Ikeda H, Takano H, Ueda K, Shoun H.

Sci Rep. 2016 Feb 25;6:22038. doi: 10.1038/srep22038.

3.

Structural basis for the 4'-hydroxylation of diclofenac by a microbial cytochrome P450 monooxygenase.

Xu LH, Ikeda H, Liu L, Arakawa T, Wakagi T, Shoun H, Fushinobu S.

Appl Microbiol Biotechnol. 2015 Apr;99(7):3081-91. doi: 10.1007/s00253-014-6148-y. Epub 2014 Oct 24.

PMID:
25341403
4.

Nitrite formation from organic nitrogen by Streptomyces antibioticus supporting bacterial cell growth and possible involvement of nitric oxide as an intermediate.

Sasaki Y, Takaya N, Morita A, Nakamura A, Shoun H.

Biosci Biotechnol Biochem. 2014;78(9):1603-10. doi: 10.1080/09168451.2014.932665. Epub 2014 Jul 18.

PMID:
25209510
5.

New insights into the nature of observable reaction intermediates in cytochrome P450 NO reductase by using a combination of spectroscopy and quantum mechanics/molecular mechanics calculations.

Riplinger C, Bill E, Daiber A, Ullrich V, Shoun H, Neese F.

Chemistry. 2014 Feb 3;20(6):1602-14. doi: 10.1002/chem.201302443. Epub 2014 Jan 22.

PMID:
24453075
6.

Brevibacillus fulvus sp. nov., isolated from a compost pile.

Hatayama K, Shoun H, Ueda Y, Nakamura A.

Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):506-12. doi: 10.1099/ijs.0.051052-0. Epub 2013 Oct 8.

PMID:
24105946
7.

Effectiveness of heat treatment to protect introduced denitrifying bacteria from eukaryotic predatory microorganisms in a pilot-scale bioreactor.

Ikeda-Ohtsubo W, Miyahara M, Yamada T, Watanabe A, Fushinobu S, Wakagi T, Shoun H, Miyauchi K, Endo G.

J Biosci Bioeng. 2013 Dec;116(6):722-4. doi: 10.1016/j.jbiosc.2013.05.024. Epub 2013 Jun 28.

PMID:
23810658
8.

Bioaugmentation of a wastewater bioreactor system with the nitrous oxide-reducing denitrifier Pseudomonas stutzeri strain TR2.

Ikeda-Ohtsubo W, Miyahara M, Kim SW, Yamada T, Matsuoka M, Watanabe A, Fushinobu S, Wakagi T, Shoun H, Miyauchi K, Endo G.

J Biosci Bioeng. 2013 Jan;115(1):37-42. doi: 10.1016/j.jbiosc.2012.08.015. Epub 2012 Sep 19.

PMID:
22999357
9.

Survival of the aerobic denitrifier Pseudomonas stutzeri strain TR2 during co-culture with activated sludge under denitrifying conditions.

Miyahara M, Kim SW, Zhou S, Fushinobu S, Yamada T, Ikeda-Ohtsubo W, Watanabe A, Miyauchi K, Endo G, Wakagi T, Shoun H.

Biosci Biotechnol Biochem. 2012;76(3):495-500.

10.

Fungal denitrification and nitric oxide reductase cytochrome P450nor.

Shoun H, Fushinobu S, Jiang L, Kim SW, Wakagi T.

Philos Trans R Soc Lond B Biol Sci. 2012 May 5;367(1593):1186-94. doi: 10.1098/rstb.2011.0335. Review.

11.

Advenella faeciporci sp. nov., a nitrite-denitrifying bacterium isolated from nitrifying-denitrifying activated sludge collected from a laboratory-scale bioreactor treating piggery wastewater.

Matsuoka M, Park S, An SY, Miyahara M, Kim SW, Kamino K, Fushinobu S, Yokota A, Wakagi T, Shoun H.

Int J Syst Evol Microbiol. 2012 Dec;62(Pt 12):2986-90. doi: 10.1099/ijs.0.037440-0. Epub 2012 Feb 3.

PMID:
22307513
12.

Generation of gaseous sulfur-containing compounds in tumour tissue and suppression of gas diffusion as an antitumour treatment.

Yamagishi K, Onuma K, Chiba Y, Yagi S, Aoki S, Sato T, Sugawara Y, Hosoya N, Saeki Y, Takahashi M, Fuji M, Ohsaka T, Okajima T, Akita K, Suzuki T, Senawongse P, Urushiyama A, Kawai K, Shoun H, Ishii Y, Ishikawa H, Sugiyama S, Nakajima M, Tsuboi M, Yamanaka T.

Gut. 2012 Apr;61(4):554-61. doi: 10.1136/gutjnl-2011-300721. Epub 2011 Aug 11.

PMID:
21836027
13.

Conserved residues in membrane-bound acid pyrophosphatase from Sulfolobus tokodaii, a thermoacidophilic archaeon.

Manabe F, Shoun H, Wakagi T.

Extremophiles. 2011 May;15(3):359-64. doi: 10.1007/s00792-011-0367-2. Epub 2011 Apr 2.

PMID:
21461791
14.

Multi-energy metabolic mechanisms of the fungus Fusarium oxysporum in low oxygen environments.

Zhou Z, Takaya N, Shoun H.

Biosci Biotechnol Biochem. 2010;74(12):2431-7. Epub 2010 Dec 7.

15.

Pentalenic acid is a shunt metabolite in the biosynthesis of the pentalenolactone family of metabolites: hydroxylation of 1-deoxypentalenic acid mediated by CYP105D7 (SAV_7469) of Streptomyces avermitilis.

Takamatsu S, Xu LH, Fushinobu S, Shoun H, Komatsu M, Cane DE, Ikeda H.

J Antibiot (Tokyo). 2011 Jan;64(1):65-71. doi: 10.1038/ja.2010.135. Epub 2010 Nov 17.

16.

Functional analysis and subcellular location of two flavohemoglobins from Aspergillus oryzae.

Zhou S, Fushinobu S, Kim SW, Nakanishi Y, Maruyama J, Kitamoto K, Wakagi T, Shoun H.

Fungal Genet Biol. 2011 Feb;48(2):200-7. doi: 10.1016/j.fgb.2010.08.011. Epub 2010 Sep 9.

PMID:
20817113
17.

Crystal structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism.

Suzuki R, Katayama T, Kim BJ, Wakagi T, Shoun H, Ashida H, Yamamoto K, Fushinobu S.

J Biol Chem. 2010 Oct 29;285(44):34279-87. doi: 10.1074/jbc.M110.156281. Epub 2010 Aug 24.

18.

Overexpression, crystallization and preliminary X-ray analysis of xylulose-5-phosphate/fructose-6-phosphate phosphoketolase from Bifidobacterium breve.

Suzuki R, Kim BJ, Shibata T, Iwamoto Y, Katayama T, Ashida H, Wakagi T, Shoun H, Fushinobu S, Yamamoto K.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Aug 1;66(Pt 8):941-3. doi: 10.1107/S1744309110023845. Epub 2010 Jul 29.

19.

The possible involvement of copper-containing nitrite reductase (NirK) and flavohemoglobin in denitrification by the fungus Cylindrocarpon tonkinense.

Kim SW, Fushinobu S, Zhou S, Wakagi T, Shoun H.

Biosci Biotechnol Biochem. 2010;74(7):1403-7. Epub 2010 Jul 7.

20.

Potential of aerobic denitrification by Pseudomonas stutzeri TR2 to reduce nitrous oxide emissions from wastewater treatment plants.

Miyahara M, Kim SW, Fushinobu S, Takaki K, Yamada T, Watanabe A, Miyauchi K, Endo G, Wakagi T, Shoun H.

Appl Environ Microbiol. 2010 Jul;76(14):4619-25. doi: 10.1128/AEM.01983-09. Epub 2010 May 21.

21.

A eukaryotic copper-containing nitrite reductase derived from a NirK homolog gene of Aspergillus oryzae.

Nakanishi Y, Zhou S, Kim SW, Fushinobu S, Maruyama J, Kitamoto K, Wakagi T, Shoun H.

Biosci Biotechnol Biochem. 2010;74(5):984-91. Epub 2010 May 7.

22.

Regio- and stereospecificity of filipin hydroxylation sites revealed by crystal structures of cytochrome P450 105P1 and 105D6 from Streptomyces avermitilis.

Xu LH, Fushinobu S, Takamatsu S, Wakagi T, Ikeda H, Shoun H.

J Biol Chem. 2010 May 28;285(22):16844-53. doi: 10.1074/jbc.M109.092460. Epub 2010 Apr 7.

23.

Aspergillus oryzae flavohemoglobins promote oxidative damage by hydrogen peroxide.

Zhou S, Fushinobu S, Kim SW, Nakanishi Y, Wakagi T, Shoun H.

Biochem Biophys Res Commun. 2010 Apr 9;394(3):558-61. doi: 10.1016/j.bbrc.2010.03.018. Epub 2010 Mar 6.

PMID:
20211603
24.

Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.

Tsukimoto K, Takada R, Araki Y, Suzuki K, Karita S, Wakagi T, Shoun H, Watanabe T, Fushinobu S.

FEBS Lett. 2010 Mar 19;584(6):1205-11. doi: 10.1016/j.febslet.2010.02.027. Epub 2010 Feb 14.

25.

Nitrous oxide emission from nitrifying activated sludge dependent on denitrification by ammonia-oxidizing bacteria.

Kim SW, Miyahara M, Fushinobu S, Wakagi T, Shoun H.

Bioresour Technol. 2010 Jun;101(11):3958-63. doi: 10.1016/j.biortech.2010.01.030. Epub 2010 Feb 6.

PMID:
20138758
26.

Structural explanation for the acquisition of glycosynthase activity.

Hidaka M, Fushinobu S, Honda Y, Wakagi T, Shoun H, Kitaoka M.

J Biochem. 2010 Feb;147(2):237-44. doi: 10.1093/jb/mvp159. Epub 2009 Oct 9.

PMID:
19819900
27.

Membrane-bound acid pyrophosphatase from Sulfolobus tokodaii, a thermoacidophilic archaeon: heterologous expression of the gene and characterization of the product.

Manabe F, Itoh YH, Shoun H, Wakagi T.

Extremophiles. 2009 Nov;13(6):859-65. doi: 10.1007/s00792-009-0273-z. Epub 2009 Aug 21.

PMID:
19696963
28.

Crystallographic and mutational analyses of substrate recognition of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum.

Suzuki R, Katayama T, Kitaoka M, Kumagai H, Wakagi T, Shoun H, Ashida H, Yamamoto K, Fushinobu S.

J Biochem. 2009 Sep;146(3):389-98. doi: 10.1093/jb/mvp086. Epub 2009 Jun 5.

PMID:
19502354
29.

Cloning and characterization of two flavohemoglobins from Aspergillus oryzae.

Zhou S, Fushinobu S, Nakanishi Y, Kim SW, Wakagi T, Shoun H.

Biochem Biophys Res Commun. 2009 Mar 27;381(1):7-11. doi: 10.1016/j.bbrc.2009.01.112. Epub 2009 Jan 23.

PMID:
19351585
30.

Eukaryotic nirK genes encoding copper-containing nitrite reductase: originating from the protomitochondrion?

Kim SW, Fushinobu S, Zhou S, Wakagi T, Shoun H.

Appl Environ Microbiol. 2009 May;75(9):2652-8. doi: 10.1128/AEM.02536-08. Epub 2009 Mar 6.

31.

The crystal structure of galacto-N-biose/lacto-N-biose I phosphorylase: a large deformation of a TIM barrel scaffold.

Hidaka M, Nishimoto M, Kitaoka M, Wakagi T, Shoun H, Fushinobu S.

J Biol Chem. 2009 Mar 13;284(11):7273-83. doi: 10.1074/jbc.M808525200. Epub 2009 Jan 5.

32.

Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state.

Xu LH, Fushinobu S, Ikeda H, Wakagi T, Shoun H.

J Bacteriol. 2009 Feb;191(4):1211-9. doi: 10.1128/JB.01276-08. Epub 2008 Dec 12.

33.

Identification of the lysine residue responsible for coenzyme A binding in the heterodimeric 2-oxoacid:ferredoxin oxidoreductase from Sulfolobus tokodaii, a thermoacidophilic archaeon, using 4-fluoro-7-nitrobenzofurazan as an affinity label.

Luo J, Fukuda E, Takase H, Fushinobu S, Shoun H, Wakagi T.

Biochim Biophys Acta. 2009 Feb;1794(2):335-40. doi: 10.1016/j.bbapap.2008.10.006. Epub 2008 Nov 5.

PMID:
19027887
34.

[Physiological function, reaction mechanism, and structure of cytochrone P450nor].

Shoun H, Fushinobu S.

Seikagaku. 2008 Jun;80(6):560-8. Review. Japanese. No abstract available.

PMID:
18634431
35.

Production of hydroxy-fatty acid derivatives from waste oil by Escherichia coli cells producing fungal cytochrome P450foxy.

Kitazume T, Yamazaki Y, Matsuyama S, Shoun H, Takaya N.

Appl Microbiol Biotechnol. 2008 Jul;79(6):981-8. doi: 10.1007/s00253-008-1513-3. Epub 2008 May 30.

PMID:
18512058
36.

Purification and functional analysis of fungal nitric oxide reductase cytochrome P450nor.

Zhang L, Shoun H.

Methods Enzymol. 2008;437:117-33. doi: 10.1016/S0076-6879(07)37007-9. Review.

PMID:
18433626
37.

Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.

Suzuki R, Wada J, Katayama T, Fushinobu S, Wakagi T, Shoun H, Sugimoto H, Tanaka A, Kumagai H, Ashida H, Kitaoka M, Yamamoto K.

J Biol Chem. 2008 May 9;283(19):13165-73. doi: 10.1074/jbc.M709777200. Epub 2008 Mar 10.

38.

Alternative strategy for converting an inverting glycoside hydrolase into a glycosynthase.

Honda Y, Fushinobu S, Hidaka M, Wakagi T, Shoun H, Taniguchi H, Kitaoka M.

Glycobiology. 2008 Apr;18(4):325-30. doi: 10.1093/glycob/cwn011. Epub 2008 Feb 9.

PMID:
18263897
39.

Streptomyces griseus enhances denitrification by Ralstonia pickettii K50, which is possibly mediated by histidine produced during co-culture.

Takaki K, Fushinobu S, Kim SW, Miyahara M, Wakagi T, Shoun H.

Biosci Biotechnol Biochem. 2008 Jan;72(1):163-70. Epub 2008 Jan 7.

40.

Purification, crystallization and preliminary X-ray analysis of the galacto-N-biose-/lacto-N-biose I-binding protein (GL-BP) of the ABC transporter from Bifidobacterium longum JCM1217.

Wada J, Suzuki R, Fushinobu S, Kitaoka M, Wakagi T, Shoun H, Ashida H, Kumagai H, Katayama T, Yamamoto K.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Sep 1;63(Pt 9):751-3. Epub 2007 Aug 10.

41.

Crystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium.

Nijikken Y, Tsukada T, Igarashi K, Samejima M, Wakagi T, Shoun H, Fushinobu S.

FEBS Lett. 2007 Apr 3;581(7):1514-20. Epub 2007 Mar 13.

42.

Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.

Nishimasu H, Fushinobu S, Shoun H, Wakagi T.

J Biol Chem. 2007 Mar 30;282(13):9923-31. Epub 2007 Jan 17.

43.

Characterization of a thermostable carboxylesterase from the hyperthermophilic bacterium Thermotoga maritima.

Kakugawa S, Fushinobu S, Wakagi T, Shoun H.

Appl Microbiol Biotechnol. 2007 Mar;74(3):585-91. Epub 2006 Nov 15.

PMID:
17106678
45.

The family 42 carbohydrate-binding module of family 54 alpha-L-arabinofuranosidase specifically binds the arabinofuranose side chain of hemicellulose.

Miyanaga A, Koseki T, Miwa Y, Mese Y, Nakamura S, Kuno A, Hirabayashi J, Matsuzawa H, Wakagi T, Shoun H, Fushinobu S.

Biochem J. 2006 Nov 1;399(3):503-11.

46.

Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01.

Jun SY, Fushinobu S, Nojiri H, Omori T, Shoun H, Wakagi T.

Biochim Biophys Acta. 2006 Jul;1764(7):1159-66. Epub 2006 Jun 7.

PMID:
16844437
47.

Mutational analysis of N-glycosylation recognition sites on the biochemical properties of Aspergillus kawachii alpha-L-arabinofuranosidase 54.

Koseki T, Miwa Y, Mese Y, Miyanaga A, Fushinobu S, Wakagi T, Shoun H, Matsuzawa H, Hashizume K.

Biochim Biophys Acta. 2006 Sep;1760(9):1458-64. Epub 2006 May 13.

PMID:
16784813
48.

[Denitrification and anaerobic energy producing mechanisms by fungi].

Shoun H.

Tanpakushitsu Kakusan Koso. 2006 May;51(5):419-29. Review. Japanese. No abstract available.

PMID:
16686344
49.

Structural dissection of the reaction mechanism of cellobiose phosphorylase.

Hidaka M, Kitaoka M, Hayashi K, Wakagi T, Shoun H, Fushinobu S.

Biochem J. 2006 Aug 15;398(1):37-43.

50.

Crystallization and preliminary X-ray analysis of cytosolic alpha-mannosidase from Thermotoga maritima.

Nakajima M, Fushinobu S, Imamura H, Shoun H, Wakagi T.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Feb 1;62(Pt 2):104-5. Epub 2006 Jan 27.

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