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Items: 31

1.

CRISPR-Cas in mobile genetic elements: counter-defence and beyond.

Faure G, Shmakov SA, Yan WX, Cheng DR, Scott DA, Peters JE, Makarova KS, Koonin EV.

Nat Rev Microbiol. 2019 Aug;17(8):513-525. doi: 10.1038/s41579-019-0204-7.

PMID:
31165781
2.

Announcing the 2019 ACS Nano Award Lecture Laureates.

Bunje H, Millstone JE, Nie G, Wee ATS, Weil T, Shmakov SN, Weiss PS.

ACS Nano. 2019 May 28;13(5):4859-4861. doi: 10.1021/acsnano.9b03722. No abstract available.

PMID:
31137181
3.

Building Functional Nanodevices with Vesicle-Templated Porous Polymer Nanocapsules.

Dergunov SA, Kim MD, Shmakov SN, Pinkhassik E.

Acc Chem Res. 2019 Jan 15;52(1):189-198. doi: 10.1021/acs.accounts.8b00442. Epub 2018 Dec 18.

PMID:
30561994
4.

Optical activity anisotropy of chitosan-based films.

Shipovskaya AB, Shmakov SL, Gegel NO.

Carbohydr Polym. 2019 Feb 15;206:476-486. doi: 10.1016/j.carbpol.2018.11.026. Epub 2018 Nov 13.

PMID:
30553347
5.

Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems.

Faure G, Shmakov SA, Makarova KS, Wolf YI, Crawley AB, Barrangou R, Koonin EV.

RNA Biol. 2019 Apr;16(4):435-448. doi: 10.1080/15476286.2018.1493331. Epub 2018 Aug 14.

6.

Announcing the 2018 ACS Nano Award Lecture Laureates.

Shmakov SN, Weiss PS.

ACS Nano. 2018 Jun 26;12(6):5067-5068. doi: 10.1021/acsnano.8b04497. Epub 2018 Jun 18. No abstract available.

PMID:
29911860
7.

Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis.

Shmakov SA, Makarova KS, Wolf YI, Severinov KV, Koonin EV.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):E5307-E5316. doi: 10.1073/pnas.1803440115. Epub 2018 May 21.

8.

Phylogenomics of Cas4 family nucleases.

Hudaiberdiev S, Shmakov S, Wolf YI, Terns MP, Makarova KS, Koonin EV.

BMC Evol Biol. 2017 Nov 28;17(1):232. doi: 10.1186/s12862-017-1081-1.

9.

The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes.

Shmakov SA, Sitnik V, Makarova KS, Wolf YI, Severinov KV, Koonin EV.

MBio. 2017 Sep 19;8(5). pii: e01397-17. doi: 10.1128/mBio.01397-17.

10.

Recruitment of CRISPR-Cas systems by Tn7-like transposons.

Peters JE, Makarova KS, Shmakov S, Koonin EV.

Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):E7358-E7366. doi: 10.1073/pnas.1709035114. Epub 2017 Aug 15.

11.

Unraveling the Single-Nanometer Thickness of Shells of Vesicle-Templated Polymer Nanocapsules.

Richter AG, Dergunov SA, Kim MD, Shmakov SN, Pingali SV, Urban VS, Liu Y, Pinkhassik E.

J Phys Chem Lett. 2017 Aug 3;8(15):3630-3636. doi: 10.1021/acs.jpclett.7b01149. Epub 2017 Jul 25.

PMID:
28715200
12.

On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires.

Silas S, Makarova KS, Shmakov S, Páez-Espino D, Mohr G, Liu Y, Davison M, Roux S, Krishnamurthy SR, Fu BXH, Hansen LL, Wang D, Sullivan MB, Millard A, Clokie MR, Bhaya D, Lambowitz AM, Kyrpides NC, Koonin EV, Fire AZ.

MBio. 2017 Jul 11;8(4). pii: e00897-17. doi: 10.1128/mBio.00897-17.

13.

Diversity and evolution of class 2 CRISPR-Cas systems.

Shmakov S, Smargon A, Scott D, Cox D, Pyzocha N, Yan W, Abudayyeh OO, Gootenberg JS, Makarova KS, Wolf YI, Severinov K, Zhang F, Koonin EV.

Nat Rev Microbiol. 2017 Mar;15(3):169-182. doi: 10.1038/nrmicro.2016.184. Epub 2017 Jan 23.

14.

Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28.

Smargon AA, Cox DBT, Pyzocha NK, Zheng K, Slaymaker IM, Gootenberg JS, Abudayyeh OA, Essletzbichler P, Shmakov S, Makarova KS, Koonin EV, Zhang F.

Mol Cell. 2017 Feb 16;65(4):618-630.e7. doi: 10.1016/j.molcel.2016.12.023. Epub 2017 Jan 5.

15.

Encapsulation of Homogeneous Catalysts in Porous Polymer Nanocapsules Produces Fast-Acting Selective Nanoreactors.

Dergunov SA, Khabiyev AT, Shmakov SN, Kim MD, Ehterami N, Weiss MC, Birman VB, Pinkhassik E.

ACS Nano. 2016 Dec 27;10(12):11397-11406. doi: 10.1021/acsnano.6b06735. Epub 2016 Nov 22.

16.

Dynamics of Escherichia coli type I-E CRISPR spacers over 42 000 years.

Savitskaya E, Lopatina A, Medvedeva S, Kapustin M, Shmakov S, Tikhonov A, Artamonova II, Logacheva M, Severinov K.

Mol Ecol. 2017 Apr;26(7):2019-2026. doi: 10.1111/mec.13961. Epub 2017 Jan 17.

17.

Altered stoichiometry Escherichia coli Cascade complexes with shortened CRISPR RNA spacers are capable of interference and primed adaptation.

Kuznedelov K, Mekler V, Lemak S, Tokmina-Lukaszewska M, Datsenko KA, Jain I, Savitskaya E, Mallon J, Shmakov S, Bothner B, Bailey S, Yakunin AF, Severinov K, Semenova E.

Nucleic Acids Res. 2016 Dec 15;44(22):10849-10861. Epub 2016 Oct 13.

18.

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector.

Abudayyeh OO, Gootenberg JS, Konermann S, Joung J, Slaymaker IM, Cox DB, Shmakov S, Makarova KS, Semenova E, Minakhin L, Severinov K, Regev A, Lander ES, Koonin EV, Zhang F.

Science. 2016 Aug 5;353(6299):aaf5573. doi: 10.1126/science.aaf5573. Epub 2016 Jun 2.

19.

Controlled Permeability in Porous Polymer Nanocapsules Enabling Size- and Charge-Selective SERS Nanoprobes.

Jia Y, Shmakov SN, Pinkhassik E.

ACS Appl Mater Interfaces. 2016 Aug 3;8(30):19755-63. doi: 10.1021/acsami.6b05522. Epub 2016 May 26.

20.

Tuning Optical Properties of Encapsulated Clusters of Gold Nanoparticles through Stimuli-Triggered Controlled Aggregation.

Dergunov SA, Kim MD, Shmakov SN, Richter AG, Weigand S, Pinkhassik E.

Chemistry. 2016 Jun 1;22(23):7702-5. doi: 10.1002/chem.201601072. Epub 2016 May 9.

PMID:
27159384
21.

Metagenomic Analysis of Bacterial Communities of Antarctic Surface Snow.

Lopatina A, Medvedeva S, Shmakov S, Logacheva MD, Krylenkov V, Severinov K.

Front Microbiol. 2016 Mar 31;7:398. doi: 10.3389/fmicb.2016.00398. eCollection 2016.

22.

Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity.

Krupovic M, Shmakov S, Makarova KS, Forterre P, Koonin EV.

Genome Biol Evol. 2016 Jan 13;8(2):375-86. doi: 10.1093/gbe/evw006.

23.

Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems.

Shmakov S, Abudayyeh OO, Makarova KS, Wolf YI, Gootenberg JS, Semenova E, Minakhin L, Joung J, Konermann S, Severinov K, Zhang F, Koonin EV.

Mol Cell. 2015 Nov 5;60(3):385-97. doi: 10.1016/j.molcel.2015.10.008. Epub 2015 Oct 22.

24.

Size-selective yolk-shell nanoreactors with nanometer-thin porous polymer shells.

Jia Y, Shmakov SN, Register P, Pinkhassik E.

Chemistry. 2015 Sep 1;21(36):12709-14. doi: 10.1002/chem.201501968. Epub 2015 Jul 28.

PMID:
26223572
25.

Pervasive generation of oppositely oriented spacers during CRISPR adaptation.

Shmakov S, Savitskaya E, Semenova E, Logacheva MD, Datsenko KA, Severinov K.

Nucleic Acids Res. 2014 May;42(9):5907-16. doi: 10.1093/nar/gku226. Epub 2014 Apr 11.

26.

Algorithm to calculate limiting cumulative particle size distribution functions from turbidimetric data.

Shmakov SL.

Appl Opt. 2014 Jan 10;53(2):301-5. doi: 10.1364/AO.53.000301.

PMID:
24514065
27.

Facile directed assembly of hollow polymer nanocapsules within spontaneously formed catanionic surfactant vesicles.

Kim MD, Dergunov SA, Richter AG, Durbin J, Shmakov SN, Jia Y, Kenbeilova S, Orazbekuly Y, Kengpeiil A, Lindner E, Pingali SV, Urban VS, Weigand S, Pinkhassik E.

Langmuir. 2014 Jun 24;30(24):7061-9. doi: 10.1021/la404026w. Epub 2014 Jan 23.

PMID:
24341533
28.

Ship-in-a-bottle entrapment of molecules in porous nanocapsules.

Shmakov SN, Dergunov SA, Pinkhassik E.

Chem Commun (Camb). 2011 Aug 7;47(29):8223-5. doi: 10.1039/c1cc11526j. Epub 2011 May 4.

PMID:
21541422
29.

Simultaneous templating of polymer nanocapsules and entrapped silver nanoparticles.

Shmakov SN, Pinkhassik E.

Chem Commun (Camb). 2010 Oct 21;46(39):7346-8. doi: 10.1039/c0cc01988g. Epub 2010 Sep 1.

PMID:
20820521
30.

[Acute mesenteric lymphadenitis: modern approaches to differential diagnostics and a choice of treatment tactics (review of literature)].

Esipov AV, Kislenko AM, Eriashev FA, Bespal'ko VI, Shmakov SN.

Voen Med Zh. 2010 Jun;331(6):27-31. Review. Russian.

PMID:
20731093
31.

[Difficulties in diagnosis of malaria in servicemen].

Antukh EA, Shmakov SN, Slovakovskiĭ SS, Bazhukov OA.

Voen Med Zh. 2001 Apr;322(4):59-62. Russian. No abstract available.

PMID:
11547669

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