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Items: 1 to 50 of 193

1.

Galectin-3and risk of cardiovascular events and all-cause mortality in type 2 diabetes mellitus.

Tan KCB, Cheung CL, Lee ACH, Lam JKY, Wong Y, Shiu SWM.

Diabetes Metab Res Rev. 2018 Oct 30:e3093. doi: 10.1002/dmrr.3093. [Epub ahead of print]

PMID:
30378236
2.

Factors Influencing Gene Family Size Variation Among Related Species in a Plant Family, Solanaceae.

Wang P, Moore BM, Panchy NL, Meng F, Lehti-Shiu MD, Shiu SH.

Genome Biol Evol. 2018 Oct 1;10(10):2596-2613. doi: 10.1093/gbe/evy193.

3.

The Three S's for Aptamer-Mediated Control of DNA Nanostructure Dynamics: Shape, Self-Complementarity, and Spatial Flexibility.

Shiu SC, Kinghorn AB, Sakai Y, Cheung YW, Heddle JG, Tanner JA.

Chembiochem. 2018 Sep 17;19(18):1900-1906. doi: 10.1002/cbic.201800308. Epub 2018 Aug 10.

PMID:
30007003
4.

Aptamer Display on Diverse DNA Polyhedron Supports.

Shiu SC, Fraser LA, Ding Y, Tanner JA.

Molecules. 2018 Jul 11;23(7). pii: E1695. doi: 10.3390/molecules23071695.

5.

Differential Cross Section and Photon-Beam Asymmetry for the γ[over →]p → π^{-}Δ^{++}(1232) Reaction at Forward π^{-} Angles for E_{γ}=1.5-2.95  GeV.

Kohri H, Shiu SH, Chang WC, Yanai Y, Ahn DS, Ahn JK, Chen JY, Daté S, Ejiri H, Fujimura H, Fujiwara M, Fukui S, Gohn W, Hicks K, Hosaka A, Hotta T, Hwang SH, Imai K, Ishikawa T, Joo K, Kato Y, Kon Y, Lee HS, Maeda Y, Mibe T, Miyabe M, Morino Y, Muramatsu N, Nakano T, Nakatsugawa Y, Nam SI, Niiyama M, Noumi H, Ohashi Y, Ohta T, Oka M, Parker JD, Rangacharyulu C, Ryu SY, Sawada T, Shimizu H, Strokovsky EA, Sugaya Y, Sumihama M, Tsunemi T, Uchida M, Ungaro M, Wang SY, Yosoi M; LEPS Collaboration.

Phys Rev Lett. 2018 May 18;120(20):202004. doi: 10.1103/PhysRevLett.120.202004.

PMID:
29864366
6.

Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato.

Liu MJ, Sugimoto K, Uygun S, Panchy N, Campbell MS, Yandell M, Howe GA, Shiu SH.

Plant Cell. 2018 Jul;30(7):1445-1460. doi: 10.1105/tpc.18.00194. Epub 2018 May 9.

7.

A Model-Based Approach for Identifying Functional Intergenic Transcribed Regions and Noncoding RNAs.

Lloyd JP, Tsai ZT, Sowers RP, Panchy NL, Shiu SH.

Mol Biol Evol. 2018 Jun 1;35(6):1422-1436. doi: 10.1093/molbev/msy035.

PMID:
29554332
8.

Galectin-3 is independently associated with progression of nephropathy in type 2 diabetes mellitus.

Tan KCB, Cheung CL, Lee ACH, Lam JKY, Wong Y, Shiu SWM.

Diabetologia. 2018 May;61(5):1212-1219. doi: 10.1007/s00125-018-4552-z. Epub 2018 Feb 7.

PMID:
29417184
9.

An aptamer-enabled DNA nanobox for protein sensing.

Tang MSL, Shiu SC, Godonoga M, Cheung YW, Liang S, Dirkzwager RM, Kinghorn AB, Fraser LA, Heddle JG, Tanner JA.

Nanomedicine. 2018 Feb 1;14(4):1161-1168. doi: 10.1016/j.nano.2018.01.018. [Epub ahead of print]

PMID:
29410111
10.

Recovery from N Deprivation Is a Transcriptionally and Functionally Distinct State in Chlamydomonas.

Tsai CH, Uygun S, Roston R, Shiu SH, Benning C.

Plant Physiol. 2018 Mar;176(3):2007-2023. doi: 10.1104/pp.17.01546. Epub 2017 Dec 29.

11.

Transcatheter arterial chemoembolization after stopping sorafenib therapy for advanced hepatocellular carcinoma.

Huang YK, Yen CL, Shiu SI, Lee SW, Chang PY, Yeh HZ, Lee TY.

PLoS One. 2017 Nov 30;12(11):e0188999. doi: 10.1371/journal.pone.0188999. eCollection 2017.

12.

Aptamer Bioinformatics.

Kinghorn AB, Fraser LA, Lang S, Shiu SCC, Tanner JA.

Int J Mol Sci. 2017 Nov 24;18(12). pii: E2516. doi: 10.3390/ijms18122516. Review.

13.

A portable microfluidic Aptamer-Tethered Enzyme Capture (APTEC) biosensor for malaria diagnosis.

Fraser LA, Kinghorn AB, Dirkzwager RM, Liang S, Cheung YW, Lim B, Shiu SC, Tang MSL, Andrew D, Manitta J, Richards JS, Tanner JA.

Biosens Bioelectron. 2018 Feb 15;100:591-596. doi: 10.1016/j.bios.2017.10.001. Epub 2017 Oct 4.

PMID:
29032164
14.

Elevated auxin biosynthesis and transport underlie high vein density in C4 leaves.

Huang CF, Yu CP, Wu YH, Lu MJ, Tu SL, Wu SH, Shiu SH, Ku MSB, Li WH.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):E6884-E6891. doi: 10.1073/pnas.1709171114. Epub 2017 Jul 31.

15.

Pre-β1 HDL in type 2 diabetes mellitus.

Shiu SW, Wong Y, Tan KC.

Atherosclerosis. 2017 Aug;263:24-28. doi: 10.1016/j.atherosclerosis.2017.05.031. Epub 2017 May 25.

PMID:
28595104
17.

Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779.

Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya, Simpson JP, TerBush A, Warakanont J, Zäuner S, Farre EM, Hegg EL, Jiang N, Kuo MH, Lu Y, Niyogi KK, Ohlrogge J, Osteryoung KW, Shachar-Hill Y, Sears BB, Sun Y, Takahashi H, Yandell M, Shiu SH, Benning C.

PLoS Genet. 2017 May 23;13(5):e1006802. doi: 10.1371/journal.pgen.1006802. eCollection 2017 May.

18.

High-Order Local Pooling and Encoding Gaussians Over a Dictionary of Gaussians.

Li P, Zeng H, Wang Q, Shiu SCK, Zhang L.

IEEE Trans Image Process. 2017 Jul;26(7):3372-3384. doi: 10.1109/TIP.2017.2695884. Epub 2017 Apr 19.

PMID:
28436868
19.

Defining Functional Genic Regions in the Human Genome through Integration of Biochemical, Evolutionary, and Genetic Evidence.

Tsai ZT, Lloyd JP, Shiu SH.

Mol Biol Evol. 2017 Jul 1;34(7):1788-1798. doi: 10.1093/molbev/msx101.

PMID:
28398576
20.

Predictive Models of Spatial Transcriptional Response to High Salinity.

Uygun S, Seddon AE, Azodi CB, Shiu SH.

Plant Physiol. 2017 May;174(1):450-464. doi: 10.1104/pp.16.01828. Epub 2017 Apr 3.

21.

A rare case of plastid protein-coding gene duplication in the chloroplast genome of Euglena archaeoplastidiata (Euglenophyta).

Bennett MS, Shiu SH, Triemer RE.

J Phycol. 2017 Jun;53(3):493-502. doi: 10.1111/jpy.12531. Epub 2017 Apr 5.

PMID:
28295310
22.

Utility and Limitations of Using Gene Expression Data to Identify Functional Associations.

Uygun S, Peng C, Lehti-Shiu MD, Last RL, Shiu SH.

PLoS Comput Biol. 2016 Dec 9;12(12):e1005244. doi: 10.1371/journal.pcbi.1005244. eCollection 2016 Dec.

23.

Loss of YAP1 defines neuroendocrine differentiation of lung tumors.

Ito T, Matsubara D, Tanaka I, Makiya K, Tanei ZI, Kumagai Y, Shiu SJ, Nakaoka HJ, Ishikawa S, Isagawa T, Morikawa T, Shinozaki-Ushiku A, Goto Y, Nakano T, Tsuchiya T, Tsubochi H, Komura D, Aburatani H, Dobashi Y, Nakajima J, Endo S, Fukayama M, Sekido Y, Niki T, Murakami Y.

Cancer Sci. 2016 Oct;107(10):1527-1538. doi: 10.1111/cas.13013. Epub 2016 Sep 9.

24.

First-line Helicobacter pylori eradication therapies in countries with high and low clarithromycin resistance: a systematic review and network meta-analysis.

Yeo YH, Shiu SI, Ho HJ, Zou B, Lin JT, Wu MS, Liou JM, Wu CY; Taiwan Gastrointestinal Disease and Helicobacter Consortium.

Gut. 2018 Jan;67(1):20-27. doi: 10.1136/gutjnl-2016-311868. Epub 2016 Sep 26. Review.

PMID:
27670375
25.

Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families.

Lehti-Shiu MD, Panchy N, Wang P, Uygun S, Shiu SH.

Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):3-20. doi: 10.1016/j.bbagrm.2016.08.005. Epub 2016 Aug 10. Review.

PMID:
27522016
26.

Aptamer Affinity Maturation by Resampling and Microarray Selection.

Kinghorn AB, Dirkzwager RM, Liang S, Cheung YW, Fraser LA, Shiu SC, Tang MS, Tanner JA.

Anal Chem. 2016 Jul 19;88(14):6981-5. doi: 10.1021/acs.analchem.6b01635. Epub 2016 Jul 7.

PMID:
27346322
27.

Evolution of Gene Duplication in Plants.

Panchy N, Lehti-Shiu M, Shiu SH.

Plant Physiol. 2016 Aug;171(4):2294-316. doi: 10.1104/pp.16.00523. Epub 2016 Jun 10. Review.

28.

A novel method for identifying polymorphic transposable elements via scanning of high-throughput short reads.

Kang H, Zhu D, Lin R, Opiyo SO, Jiang N, Shiu SH, Wang GL.

DNA Res. 2016 Jun;23(3):241-51. doi: 10.1093/dnares/dsw011. Epub 2016 Apr 20.

29.

CORRECTION. A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis.

Liu TL, Newton L, Liu MJ, Shiu SH, Farré EM.

Plant Physiol. 2016 Feb;170(2):1168. doi: 10.1104/pp.16.00089. No abstract available.

30.

A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis.

Liu TL, Newton L, Liu MJ, Shiu SH, Farré EM.

Plant Physiol. 2016 Jan;170(1):528-39. doi: 10.1104/pp.15.01562. Epub 2015 Nov 19. Erratum in: Plant Physiol. 2016 Feb;170(2):1168.

31.

Serum Level of Soluble Receptor for Advanced Glycation End Products Is Associated with A Disintegrin And Metalloproteinase 10 in Type 1 Diabetes.

Lee AC, Lam JK, Shiu SW, Wong Y, Betteridge DJ, Tan KC.

PLoS One. 2015 Sep 1;10(9):e0137330. doi: 10.1371/journal.pone.0137330. eCollection 2015.

32.

Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.

Tsai ZT, Shiu SH, Tsai HK.

PLoS Comput Biol. 2015 Aug 20;11(8):e1004418. doi: 10.1371/journal.pcbi.1004418. eCollection 2015 Aug.

33.

Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.

Lloyd JP, Seddon AE, Moghe GD, Simenc MC, Shiu SH.

Plant Cell. 2015 Aug;27(8):2133-47. doi: 10.1105/tpc.15.00051. Epub 2015 Aug 18.

34.

Effects of Yoga on Stress, Stress Adaption, and Heart Rate Variability Among Mental Health Professionals--A Randomized Controlled Trial.

Lin SL, Huang CY, Shiu SP, Yeh SH.

Worldviews Evid Based Nurs. 2015 Aug;12(4):236-45. doi: 10.1111/wvn.12097. Epub 2015 Jul 28.

PMID:
26220020
35.

Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles.

Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu SH, Farré EM.

Plant J. 2015 Sep;83(6):1097-113. doi: 10.1111/tpj.12944. Epub 2015 Aug 20.

36.

Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana.

Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH.

Plant Physiol. 2015 Aug;168(4):1717-34. doi: 10.1104/pp.15.00689. Epub 2015 Jun 23.

37.

Determinants of nucleosome positioning and their influence on plant gene expression.

Liu MJ, Seddon AE, Tsai ZT, Major IT, Floer M, Howe GA, Shiu SH.

Genome Res. 2015 Aug;25(8):1182-95. doi: 10.1101/gr.188680.114. Epub 2015 Jun 10.

38.

Prior statin use and the outcomes in patients with first-attack acute pancreatitis: A retrospective cohort study.

Shiu SI, Su PF, Jang LH, Lee BJ, Wang CY.

Eur J Intern Med. 2015 Jul;26(6):425-8. doi: 10.1016/j.ejim.2015.05.002. Epub 2015 May 18.

PMID:
25997756
39.

The Impact of the Branched-Chain Ketoacid Dehydrogenase Complex on Amino Acid Homeostasis in Arabidopsis.

Peng C, Uygun S, Shiu SH, Last RL.

Plant Physiol. 2015 Nov;169(3):1807-20. doi: 10.1104/pp.15.00461. Epub 2015 May 18.

40.

Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors.

Yu CP, Chen SC, Chang YM, Liu WY, Lin HH, Lin JJ, Chen HJ, Lu YJ, Wu YH, Lu MY, Lu CH, Shih AC, Ku MS, Shiu SH, Wu SH, Li WH.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):E2477-86. doi: 10.1073/pnas.1500605112. Epub 2015 Apr 27.

41.

Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains.

Wu G, Hufnagel DE, Denton AK, Shiu SH.

BMC Genomics. 2015 Mar 4;16:149. doi: 10.1186/s12864-015-1335-5.

42.

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.

Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M.

Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10.

43.

Prevalence, evolution, and cis-regulation of diel transcription in Chlamydomonas reinhardtii.

Panchy N, Wu G, Newton L, Tsai CH, Chen J, Benning C, Farré EM, Shiu SH.

G3 (Bethesda). 2014 Oct 28;4(12):2461-71. doi: 10.1534/g3.114.015032.

44.

Cellular cholesterol transport proteins in diabetic nephropathy.

Tsun JG, Yung S, Chau MK, Shiu SW, Chan TM, Tan KC.

PLoS One. 2014 Sep 2;9(9):e105787. doi: 10.1371/journal.pone.0105787. eCollection 2014.

45.

The causes and molecular consequences of polyploidy in flowering plants.

Moghe GD, Shiu SH.

Ann N Y Acad Sci. 2014 Jul;1320:16-34. doi: 10.1111/nyas.12466. Epub 2014 Jun 5. Review.

PMID:
24903334
46.

Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species.

Moghe GD, Hufnagel DE, Tang H, Xiao Y, Dworkin I, Town CD, Conner JK, Shiu SH.

Plant Cell. 2014 May;26(5):1925-1937. Epub 2014 May 29.

47.

Robust kernel representation with statistical local features for face recognition.

Yang M, Zhang L, Shiu SC, Zhang D.

IEEE Trans Neural Netw Learn Syst. 2013 Jun;24(6):900-12. doi: 10.1109/TNNLS.2013.2245340.

PMID:
24808472
48.

Holospinal epidural abscess complicated with bilateral psoas muscle abscess.

Shiu SI, Lee BJ, Chen HC, Lin YH, Wang CY.

Spine J. 2014 Jun 1;14(6):1072-3. doi: 10.1016/j.spinee.2013.12.020. Epub 2014 Jan 18. No abstract available.

PMID:
24445327
49.

MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.

Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, Yandell M.

Plant Physiol. 2014 Feb;164(2):513-24. doi: 10.1104/pp.113.230144. Epub 2013 Dec 4.

50.

Impact of serum amyloid A on cellular cholesterol efflux to serum in type 2 diabetes mellitus.

Tsun JG, Shiu SW, Wong Y, Yung S, Chan TM, Tan KC.

Atherosclerosis. 2013 Dec;231(2):405-10. doi: 10.1016/j.atherosclerosis.2013.10.008. Epub 2013 Oct 18.

PMID:
24267259

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