Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 209

1.

COST1 regulates autophagy to control plant drought tolerance.

Bao Y, Song WM, Wang P, Yu X, Li B, Jiang C, Shiu SH, Zhang H, Bassham DC.

Proc Natl Acad Sci U S A. 2020 Mar 31;117(13):7482-7493. doi: 10.1073/pnas.1918539117. Epub 2020 Mar 13.

PMID:
32170020
2.

Carbamylated Lipoproteins and Progression of Diabetic Kidney Disease.

Tan KCB, Cheung CL, Lee ACH, Lam JKY, Wong Y, Shiu SWM.

Clin J Am Soc Nephrol. 2020 Mar 6;15(3):359-366. doi: 10.2215/CJN.11710919. Epub 2020 Feb 19.

PMID:
32075807
3.

Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data.

Panchy NL, Lloyd JP, Shiu SH.

BMC Genomics. 2020 Feb 13;21(1):159. doi: 10.1186/s12864-020-6554-8.

4.

Putative cis-Regulatory Elements Predict Iron Deficiency Responses in Arabidopsis Roots.

Schwarz B, Azodi CB, Shiu SH, Bauer P.

Plant Physiol. 2020 Mar;182(3):1420-1439. doi: 10.1104/pp.19.00760. Epub 2020 Jan 14.

5.

Isolated Right Ventricular Metastasis in a Woman with Advanced Hepatocellular Carcinoma after Palliative Therapy.

Fan CT, Lin WW, Chen MJ, Shiu SI.

Case Rep Gastroenterol. 2019 Nov 28;13(3):487-497. doi: 10.1159/000504566. eCollection 2019 Sep-Dec.

6.

Transcriptome-Based Prediction of Complex Traits in Maize.

Azodi CB, Pardo J, VanBuren R, de Los Campos G, Shiu SH.

Plant Cell. 2020 Jan;32(1):139-151. doi: 10.1105/tpc.19.00332. Epub 2019 Oct 22.

7.

Cis-Regulatory Code for Predicting Plant Cell-Type Transcriptional Response to High Salinity.

Uygun S, Azodi CB, Shiu SH.

Plant Physiol. 2019 Dec;181(4):1739-1751. doi: 10.1104/pp.19.00653. Epub 2019 Sep 24.

8.

Benchmarking Parametric and Machine Learning Models for Genomic Prediction of Complex Traits.

Azodi CB, Bolger E, McCarren A, Roantree M, de Los Campos G, Shiu SH.

G3 (Bethesda). 2019 Nov 5;9(11):3691-3702. doi: 10.1534/g3.119.400498.

9.

I feel it in my finger: Measurement device affects cardiac interoceptive accuracy.

Murphy J, Brewer R, Coll MP, Plans D, Hall M, Shiu SS, Catmur C, Bird G.

Biol Psychol. 2019 Nov;148:107765. doi: 10.1016/j.biopsycho.2019.107765. Epub 2019 Sep 10.

10.

Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae.

Lloyd JP, Bowman MJ, Azodi CB, Sowers RP, Moghe GD, Childs KL, Shiu SH.

Sci Rep. 2019 Aug 20;9(1):12122. doi: 10.1038/s41598-019-47797-y.

11.

Miliary Tuberculosis-Related Acute Respiratory Distress Syndrome Complicated with Hemophagocytic Lymphohistiocytosis Syndrome.

Shiu SJ, Li TT, Lee BJ, Fu PK, Wang CY, Shiu SI.

Case Rep Infect Dis. 2019 May 30;2019:9501610. doi: 10.1155/2019/9501610. eCollection 2019.

12.

Ruptured Multifocal Hepatic Aneurysms in a Woman with Systemic Lupus Erythematosus Successfully Treated with Transcatheter Arterial Embolization: A Case Report and Literature Review.

Shiu SI, Yong SA, Lai KL, Tseng CW, Wang CY, Lee BJ, Chen YH.

Case Reports Hepatol. 2019 Feb 26;2019:6272419. doi: 10.1155/2019/6272419. eCollection 2019.

13.

Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication.

Panchy NL, Azodi CB, Winship EF, O'Malley RC, Shiu SH.

BMC Evol Biol. 2019 Mar 13;19(1):77. doi: 10.1186/s12862-019-1398-z.

14.

Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes.

Chang YM, Lin HH, Liu WY, Yu CP, Chen HJ, Wartini PP, Kao YY, Wu YH, Lin JJ, Lu MJ, Tu SL, Wu SH, Shiu SH, Ku MSB, Li WH.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3091-3099. doi: 10.1073/pnas.1817621116. Epub 2019 Feb 4.

15.

Robust predictions of specialized metabolism genes through machine learning.

Moore BM, Wang P, Fan P, Leong B, Schenck CA, Lloyd JP, Lehti-Shiu MD, Last RL, Pichersky E, Shiu SH.

Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2344-2353. doi: 10.1073/pnas.1817074116. Epub 2019 Jan 23. Erratum in: Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5830.

16.

DNA Aptamers for the Functionalisation of DNA Origami Nanostructures.

Sakai Y, Islam MS, Adamiak M, Shiu SC, Tanner JA, Heddle JG.

Genes (Basel). 2018 Nov 23;9(12). pii: E571. doi: 10.3390/genes9120571. Review.

17.

Galectin-3 and risk of cardiovascular events and all-cause mortality in type 2 diabetes.

Tan KCB, Cheung CL, Lee ACH, Lam JKY, Wong Y, Shiu SWM.

Diabetes Metab Res Rev. 2019 Feb;35(2):e3093. doi: 10.1002/dmrr.3093. Epub 2018 Nov 15.

PMID:
30378236
18.

Factors Influencing Gene Family Size Variation Among Related Species in a Plant Family, Solanaceae.

Wang P, Moore BM, Panchy NL, Meng F, Lehti-Shiu MD, Shiu SH.

Genome Biol Evol. 2018 Oct 1;10(10):2596-2613. doi: 10.1093/gbe/evy193.

19.

The Three S's for Aptamer-Mediated Control of DNA Nanostructure Dynamics: Shape, Self-Complementarity, and Spatial Flexibility.

Shiu SC, Kinghorn AB, Sakai Y, Cheung YW, Heddle JG, Tanner JA.

Chembiochem. 2018 Sep 17;19(18):1900-1906. doi: 10.1002/cbic.201800308. Epub 2018 Aug 10.

PMID:
30007003
20.

Aptamer Display on Diverse DNA Polyhedron Supports.

Shiu SC, Fraser LA, Ding Y, Tanner JA.

Molecules. 2018 Jul 11;23(7). pii: E1695. doi: 10.3390/molecules23071695.

21.

Differential Cross Section and Photon-Beam Asymmetry for the γ[over →]p → π^{-}Δ^{++}(1232) Reaction at Forward π^{-} Angles for E_{γ}=1.5-2.95  GeV.

Kohri H, Shiu SH, Chang WC, Yanai Y, Ahn DS, Ahn JK, Chen JY, Daté S, Ejiri H, Fujimura H, Fujiwara M, Fukui S, Gohn W, Hicks K, Hosaka A, Hotta T, Hwang SH, Imai K, Ishikawa T, Joo K, Kato Y, Kon Y, Lee HS, Maeda Y, Mibe T, Miyabe M, Morino Y, Muramatsu N, Nakano T, Nakatsugawa Y, Nam SI, Niiyama M, Noumi H, Ohashi Y, Ohta T, Oka M, Parker JD, Rangacharyulu C, Ryu SY, Sawada T, Shimizu H, Strokovsky EA, Sugaya Y, Sumihama M, Tsunemi T, Uchida M, Ungaro M, Wang SY, Yosoi M; LEPS Collaboration.

Phys Rev Lett. 2018 May 18;120(20):202004. doi: 10.1103/PhysRevLett.120.202004.

PMID:
29864366
22.

Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato.

Liu MJ, Sugimoto K, Uygun S, Panchy N, Campbell MS, Yandell M, Howe GA, Shiu SH.

Plant Cell. 2018 Jul;30(7):1445-1460. doi: 10.1105/tpc.18.00194. Epub 2018 May 9.

23.

A Model-Based Approach for Identifying Functional Intergenic Transcribed Regions and Noncoding RNAs.

Lloyd JP, Tsai ZT, Sowers RP, Panchy NL, Shiu SH.

Mol Biol Evol. 2018 Jun 1;35(6):1422-1436. doi: 10.1093/molbev/msy035.

PMID:
29554332
24.

Galectin-3 is independently associated with progression of nephropathy in type 2 diabetes mellitus.

Tan KCB, Cheung CL, Lee ACH, Lam JKY, Wong Y, Shiu SWM.

Diabetologia. 2018 May;61(5):1212-1219. doi: 10.1007/s00125-018-4552-z. Epub 2018 Feb 7.

PMID:
29417184
25.

An aptamer-enabled DNA nanobox for protein sensing.

Tang MSL, Shiu SC, Godonoga M, Cheung YW, Liang S, Dirkzwager RM, Kinghorn AB, Fraser LA, Heddle JG, Tanner JA.

Nanomedicine. 2018 Jun;14(4):1161-1168. doi: 10.1016/j.nano.2018.01.018. Epub 2018 Feb 1.

PMID:
29410111
26.

Recovery from N Deprivation Is a Transcriptionally and Functionally Distinct State in Chlamydomonas.

Tsai CH, Uygun S, Roston R, Shiu SH, Benning C.

Plant Physiol. 2018 Mar;176(3):2007-2023. doi: 10.1104/pp.17.01546. Epub 2017 Dec 29.

27.

Transcatheter arterial chemoembolization after stopping sorafenib therapy for advanced hepatocellular carcinoma.

Huang YK, Yen CL, Shiu SI, Lee SW, Chang PY, Yeh HZ, Lee TY.

PLoS One. 2017 Nov 30;12(11):e0188999. doi: 10.1371/journal.pone.0188999. eCollection 2017.

28.

Aptamer Bioinformatics.

Kinghorn AB, Fraser LA, Lang S, Shiu SCC, Tanner JA.

Int J Mol Sci. 2017 Nov 24;18(12). pii: E2516. doi: 10.3390/ijms18122516. Review.

29.

A portable microfluidic Aptamer-Tethered Enzyme Capture (APTEC) biosensor for malaria diagnosis.

Fraser LA, Kinghorn AB, Dirkzwager RM, Liang S, Cheung YW, Lim B, Shiu SC, Tang MSL, Andrew D, Manitta J, Richards JS, Tanner JA.

Biosens Bioelectron. 2018 Feb 15;100:591-596. doi: 10.1016/j.bios.2017.10.001. Epub 2017 Oct 4.

PMID:
29032164
30.

Elevated auxin biosynthesis and transport underlie high vein density in C4 leaves.

Huang CF, Yu CP, Wu YH, Lu MJ, Tu SL, Wu SH, Shiu SH, Ku MSB, Li WH.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):E6884-E6891. doi: 10.1073/pnas.1709171114. Epub 2017 Jul 31.

31.

Pre-β1 HDL in type 2 diabetes mellitus.

Shiu SW, Wong Y, Tan KC.

Atherosclerosis. 2017 Aug;263:24-28. doi: 10.1016/j.atherosclerosis.2017.05.031. Epub 2017 May 25.

PMID:
28595104
33.

Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779.

Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya, Simpson JP, TerBush A, Warakanont J, Zäuner S, Farre EM, Hegg EL, Jiang N, Kuo MH, Lu Y, Niyogi KK, Ohlrogge J, Osteryoung KW, Shachar-Hill Y, Sears BB, Sun Y, Takahashi H, Yandell M, Shiu SH, Benning C.

PLoS Genet. 2017 May 23;13(5):e1006802. doi: 10.1371/journal.pgen.1006802. eCollection 2017 May.

34.

High-Order Local Pooling and Encoding Gaussians Over a Dictionary of Gaussians.

Li P, Zeng H, Wang Q, Shiu SCK, Zhang L.

IEEE Trans Image Process. 2017 Jul;26(7):3372-3384. doi: 10.1109/TIP.2017.2695884. Epub 2017 Apr 19.

PMID:
28436868
35.

Defining Functional Genic Regions in the Human Genome through Integration of Biochemical, Evolutionary, and Genetic Evidence.

Tsai ZT, Lloyd JP, Shiu SH.

Mol Biol Evol. 2017 Jul 1;34(7):1788-1798. doi: 10.1093/molbev/msx101.

PMID:
28398576
36.

Predictive Models of Spatial Transcriptional Response to High Salinity.

Uygun S, Seddon AE, Azodi CB, Shiu SH.

Plant Physiol. 2017 May;174(1):450-464. doi: 10.1104/pp.16.01828. Epub 2017 Apr 3.

37.

A rare case of plastid protein-coding gene duplication in the chloroplast genome of Euglena archaeoplastidiata (Euglenophyta).

Bennett MS, Shiu SH, Triemer RE.

J Phycol. 2017 Jun;53(3):493-502. doi: 10.1111/jpy.12531. Epub 2017 Apr 5.

PMID:
28295310
38.

Utility and Limitations of Using Gene Expression Data to Identify Functional Associations.

Uygun S, Peng C, Lehti-Shiu MD, Last RL, Shiu SH.

PLoS Comput Biol. 2016 Dec 9;12(12):e1005244. doi: 10.1371/journal.pcbi.1005244. eCollection 2016 Dec.

39.

Loss of YAP1 defines neuroendocrine differentiation of lung tumors.

Ito T, Matsubara D, Tanaka I, Makiya K, Tanei ZI, Kumagai Y, Shiu SJ, Nakaoka HJ, Ishikawa S, Isagawa T, Morikawa T, Shinozaki-Ushiku A, Goto Y, Nakano T, Tsuchiya T, Tsubochi H, Komura D, Aburatani H, Dobashi Y, Nakajima J, Endo S, Fukayama M, Sekido Y, Niki T, Murakami Y.

Cancer Sci. 2016 Oct;107(10):1527-1538. doi: 10.1111/cas.13013. Epub 2016 Sep 9.

40.

First-line Helicobacter pylori eradication therapies in countries with high and low clarithromycin resistance: a systematic review and network meta-analysis.

Yeo YH, Shiu SI, Ho HJ, Zou B, Lin JT, Wu MS, Liou JM, Wu CY; Taiwan Gastrointestinal Disease and Helicobacter Consortium.

Gut. 2018 Jan;67(1):20-27. doi: 10.1136/gutjnl-2016-311868. Epub 2016 Sep 26. Review.

PMID:
27670375
41.

Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families.

Lehti-Shiu MD, Panchy N, Wang P, Uygun S, Shiu SH.

Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):3-20. doi: 10.1016/j.bbagrm.2016.08.005. Epub 2016 Aug 10. Review.

PMID:
27522016
42.

Aptamer Affinity Maturation by Resampling and Microarray Selection.

Kinghorn AB, Dirkzwager RM, Liang S, Cheung YW, Fraser LA, Shiu SC, Tang MS, Tanner JA.

Anal Chem. 2016 Jul 19;88(14):6981-5. doi: 10.1021/acs.analchem.6b01635. Epub 2016 Jul 7.

PMID:
27346322
43.

Evolution of Gene Duplication in Plants.

Panchy N, Lehti-Shiu M, Shiu SH.

Plant Physiol. 2016 Aug;171(4):2294-316. doi: 10.1104/pp.16.00523. Epub 2016 Jun 10. Review.

44.

A novel method for identifying polymorphic transposable elements via scanning of high-throughput short reads.

Kang H, Zhu D, Lin R, Opiyo SO, Jiang N, Shiu SH, Wang GL.

DNA Res. 2016 Jun;23(3):241-51. doi: 10.1093/dnares/dsw011. Epub 2016 Apr 20.

45.

CORRECTION. A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis.

Liu TL, Newton L, Liu MJ, Shiu SH, Farré EM.

Plant Physiol. 2016 Feb;170(2):1168. doi: 10.1104/pp.16.00089. No abstract available.

46.

A G-Box-Like Motif Is Necessary for Transcriptional Regulation by Circadian Pseudo-Response Regulators in Arabidopsis.

Liu TL, Newton L, Liu MJ, Shiu SH, Farré EM.

Plant Physiol. 2016 Jan;170(1):528-39. doi: 10.1104/pp.15.01562. Epub 2015 Nov 19. Erratum in: Plant Physiol. 2016 Feb;170(2):1168.

47.

Serum Level of Soluble Receptor for Advanced Glycation End Products Is Associated with A Disintegrin And Metalloproteinase 10 in Type 1 Diabetes.

Lee AC, Lam JK, Shiu SW, Wong Y, Betteridge DJ, Tan KC.

PLoS One. 2015 Sep 1;10(9):e0137330. doi: 10.1371/journal.pone.0137330. eCollection 2015.

48.

Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.

Tsai ZT, Shiu SH, Tsai HK.

PLoS Comput Biol. 2015 Aug 20;11(8):e1004418. doi: 10.1371/journal.pcbi.1004418. eCollection 2015 Aug.

49.

Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.

Lloyd JP, Seddon AE, Moghe GD, Simenc MC, Shiu SH.

Plant Cell. 2015 Aug;27(8):2133-47. doi: 10.1105/tpc.15.00051. Epub 2015 Aug 18.

50.

Effects of Yoga on Stress, Stress Adaption, and Heart Rate Variability Among Mental Health Professionals--A Randomized Controlled Trial.

Lin SL, Huang CY, Shiu SP, Yeh SH.

Worldviews Evid Based Nurs. 2015 Aug;12(4):236-45. doi: 10.1111/wvn.12097. Epub 2015 Jul 28.

PMID:
26220020

Supplemental Content

Support Center