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Items: 19

1.

Structural complexity and functional diversity of plant NADPH oxidases.

Kaur G, Guruprasad K, Temple BRS, Shirvanyants DG, Dokholyan NV, Pati PK.

Amino Acids. 2018 Jan;50(1):79-94. doi: 10.1007/s00726-017-2491-5. Epub 2017 Oct 25.

2.

Engineering extrinsic disorder to control protein activity in living cells.

Dagliyan O, Tarnawski M, Chu PH, Shirvanyants D, Schlichting I, Dokholyan NV, Hahn KM.

Science. 2016 Dec 16;354(6318):1441-1444.

3.

Single-Step Fabrication of Computationally Designed Microneedles by Continuous Liquid Interface Production.

Johnson AR, Caudill CL, Tumbleston JR, Bloomquist CJ, Moga KA, Ermoshkin A, Shirvanyants D, Mecham SJ, Luft JC, DeSimone JM.

PLoS One. 2016 Sep 8;11(9):e0162518. doi: 10.1371/journal.pone.0162518. eCollection 2016.

4.

Additive manufacturing. Continuous liquid interface production of 3D objects.

Tumbleston JR, Shirvanyants D, Ermoshkin N, Janusziewicz R, Johnson AR, Kelly D, Chen K, Pinschmidt R, Rolland JP, Ermoshkin A, Samulski ET, DeSimone JM.

Science. 2015 Mar 20;347(6228):1349-52. doi: 10.1126/science.aaa2397. Epub 2015 Mar 16.

5.

Light-cleavable rapamycin dimer as an optical trigger for protein dimerization.

Brown KA, Zou Y, Shirvanyants D, Zhang J, Samanta S, Mantravadi PK, Dokholyan NV, Deiters A.

Chem Commun (Camb). 2015 Apr 4;51(26):5702-5. doi: 10.1039/c4cc09442e.

PMID:
25716548
6.

Pore dynamics and conductance of RyR1 transmembrane domain.

Shirvanyants D, Ramachandran S, Mei Y, Xu L, Meissner G, Dokholyan NV.

Biophys J. 2014 Jun 3;106(11):2375-84. doi: 10.1016/j.bpj.2014.04.023.

7.

Computational approaches to understanding protein aggregation in neurodegeneration.

Redler RL, Shirvanyants D, Dagliyan O, Ding F, Kim DN, Kota P, Proctor EA, Ramachandran S, Tandon A, Dokholyan NV.

J Mol Cell Biol. 2014 Apr;6(2):104-15. doi: 10.1093/jmcb/mju007. Epub 2014 Mar 11. Review.

8.

Rational design of a ligand-controlled protein conformational switch.

Dagliyan O, Shirvanyants D, Karginov AV, Ding F, Fee L, Chandrasekaran SN, Freisinger CM, Smolen GA, Huttenlocher A, Hahn KM, Dokholyan NV.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6800-4. doi: 10.1073/pnas.1218319110. Epub 2013 Apr 8.

9.

Hybrid dynamics simulation engine for metalloproteins.

Sparta M, Shirvanyants D, Ding F, Dokholyan NV, Alexandrova AN.

Biophys J. 2012 Aug 22;103(4):767-76. doi: 10.1016/j.bpj.2012.06.024.

10.

Discrete molecular dynamics: an efficient and versatile simulation method for fine protein characterization.

Shirvanyants D, Ding F, Tsao D, Ramachandran S, Dokholyan NV.

J Phys Chem B. 2012 Jul 26;116(29):8375-82. doi: 10.1021/jp2114576. Epub 2012 Feb 10.

11.

Rigid substructure search.

Shirvanyants D, Alexandrova AN, Dokholyan NV.

Bioinformatics. 2011 May 1;27(9):1327-9. doi: 10.1093/bioinformatics/btr129. Epub 2011 Apr 1.

12.

Light regulation of protein dimerization and kinase activity in living cells using photocaged rapamycin and engineered FKBP.

Karginov AV, Zou Y, Shirvanyants D, Kota P, Dokholyan NV, Young DD, Hahn KM, Deiters A.

J Am Chem Soc. 2011 Jan 26;133(3):420-3. doi: 10.1021/ja109630v. Epub 2010 Dec 16.

13.

Spontaneous and specific activation of chemical bonds in macromolecular fluids.

Park I, Shirvanyants D, Nese A, Matyjaszewski K, Rubinstein M, Sheiko SS.

J Am Chem Soc. 2010 Sep 8;132(35):12487-91. doi: 10.1021/ja105897b.

PMID:
20707364
14.

Flory theorem for structurally asymmetric mixtures.

Sun FC, Dobrynin AV, Shirvanyants D, Lee HI, Matyjaszewski K, Rubinstein GJ, Rubinstein M, Sheiko SS.

Phys Rev Lett. 2007 Sep 28;99(13):137801. Epub 2007 Sep 24.

PMID:
17930638
15.

Adsorption-induced scission of carbon-carbon bonds.

Sheiko SS, Sun FC, Randall A, Shirvanyants D, Rubinstein M, Lee HI, Matyjaszewski K.

Nature. 2006 Mar 9;440(7081):191-4.

PMID:
16525468
16.

Multiarm molecular brushes: effect of the number of arms on the molecular weight polydispersity and surface ordering.

Boyce JR, Shirvanyants D, Sheiko SS, Ivanov DA, Qin S, Börner H, Matyjaszewski K.

Langmuir. 2004 Jul 6;20(14):6005-11.

PMID:
16459623
17.

Flow-enhanced epitaxial ordering of brush-like macromolecules on graphite.

Xu H, Sheiko SS, Shirvanyants D, Rubinstein M, Beers KL, Matyjaszewski K.

Langmuir. 2006 Jan 31;22(3):1254-9.

PMID:
16430291
18.

Molecular visualization of conformation-triggered flow instability.

Xu H, Shirvanyants D, Beers KL, Matyjaszewski K, Dobrynin AV, Rubinstein M, Sheiko SS.

Phys Rev Lett. 2005 Jun 17;94(23):237801. Epub 2005 Jun 15.

PMID:
16090503
19.

Molecular motion in a spreading precursor film.

Xu H, Shirvanyants D, Beers K, Matyjaszewski K, Rubinstein M, Sheiko SS.

Phys Rev Lett. 2004 Nov 12;93(20):206103. Epub 2004 Nov 10.

PMID:
15600943

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