Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 228

1.

Surface-Enhanced Infrared Absorption Spectroscopy of Bacterial Nitric Oxide Reductase under Electrochemical Control Using a Vibrational Probe of Carbon Monoxide.

Kato M, Nakagawa S, Tosha T, Shiro Y, Masuda Y, Nakata K, Yagi I.

J Phys Chem Lett. 2018 Sep 6;9(17):5196-5200. doi: 10.1021/acs.jpclett.8b02581. Epub 2018 Aug 29.

PMID:
30141632
2.

Reconstitution of full-length P450BM3 with an artificial metal complex by utilising the transpeptidase Sortase A.

Omura K, Aiba Y, Onoda H, Stanfield JK, Ariyasu S, Sugimoto H, Shiro Y, Shoji O, Watanabe Y.

Chem Commun (Camb). 2018 Jul 12;54(57):7892-7895. doi: 10.1039/c8cc02760a.

PMID:
29845154
3.

Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.

Wright GSA, Saeki A, Hikima T, Nishizono Y, Hisano T, Kamaya M, Nukina K, Nishitani H, Nakamura H, Yamamoto M, Antonyuk SV, Hasnain SS, Shiro Y, Sawai H.

Sci Signal. 2018 Apr 10;11(525). pii: eaaq0825. doi: 10.1126/scisignal.aaq0825.

PMID:
29636388
4.

Pseudomonas aeruginosa overexpression system of nitric oxide reductase for in vivo and in vitro mutational analyses.

Yamagiwa R, Kurahashi T, Takeda M, Adachi M, Nakamura H, Arai H, Shiro Y, Sawai H, Tosha T.

Biochim Biophys Acta Bioenerg. 2018 May;1859(5):333-341. doi: 10.1016/j.bbabio.2018.02.009. Epub 2018 Feb 27.

PMID:
29499184
5.

Characterization of the quinol-dependent nitric oxide reductase from the pathogen Neisseria meningitidis, an electrogenic enzyme.

Gonska N, Young D, Yuki R, Okamoto T, Hisano T, Antonyuk S, Hasnain SS, Muramoto K, Shiro Y, Tosha T, Ädelroth P.

Sci Rep. 2018 Feb 26;8(1):3637. doi: 10.1038/s41598-018-21804-0.

6.

Mechanistic Insights into the Activation of Soluble Guanylate Cyclase by Carbon Monoxide: A Multistep Mechanism Proposed for the BAY 41-2272 Induced Formation of 5-Coordinate CO-Heme.

Makino R, Obata Y, Tsubaki M, Iizuka T, Hamajima Y, Kato-Yamada Y, Mashima K, Shiro Y.

Biochemistry. 2018 Mar 13;57(10):1620-1631. doi: 10.1021/acs.biochem.7b01240. Epub 2018 Feb 20.

PMID:
29461815
7.

Manganese(V) Porphycene Complex Responsible for Inert C-H Bond Hydroxylation in a Myoglobin Matrix.

Oohora K, Meichin H, Kihira Y, Sugimoto H, Shiro Y, Hayashi T.

J Am Chem Soc. 2017 Dec 27;139(51):18460-18463. doi: 10.1021/jacs.7b11288. Epub 2017 Dec 14.

PMID:
29237270
8.

Roles of N- and C-terminal domains in the ligand-binding properties of cytoglobin.

Hanai S, Tsujino H, Yamashita T, Torii R, Sawai H, Shiro Y, Oohora K, Hayashi T, Uno T.

J Inorg Biochem. 2018 Feb;179:1-9. doi: 10.1016/j.jinorgbio.2017.11.003. Epub 2017 Nov 9.

PMID:
29149638
9.

Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.

Tosha T, Nomura T, Nishida T, Saeki N, Okubayashi K, Yamagiwa R, Sugahara M, Nakane T, Yamashita K, Hirata K, Ueno G, Kimura T, Hisano T, Muramoto K, Sawai H, Takeda H, Mizohata E, Yamashita A, Kanematsu Y, Takano Y, Nango E, Tanaka R, Nureki O, Shoji O, Ikemoto Y, Murakami H, Owada S, Tono K, Yabashi M, Yamamoto M, Ago H, Iwata S, Sugimoto H, Shiro Y, Kubo M.

Nat Commun. 2017 Nov 17;8(1):1585. doi: 10.1038/s41467-017-01702-1.

10.

Physical Activity May Be Associated with Conditioned Pain Modulation in Women but Not Men among Healthy Individuals.

Shiro Y, Ikemoto T, Terasawa Y, Arai YP, Hayashi K, Ushida T, Matsubara T.

Pain Res Manag. 2017;2017:9059140. doi: 10.1155/2017/9059140. Epub 2017 Sep 26.

11.

Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group.

Uehara H, Shisaka Y, Nishimura T, Sugimoto H, Shiro Y, Miyake Y, Shinokubo H, Watanabe Y, Shoji O.

Angew Chem Int Ed Engl. 2017 Nov 27;56(48):15279-15283. doi: 10.1002/anie.201707212. Epub 2017 Oct 9.

PMID:
28921809
12.

Structural basis for binding and transfer of heme in bacterial heme-acquisition systems.

Naoe Y, Nakamura N, Rahman MM, Tosha T, Nagatoishi S, Tsumoto K, Shiro Y, Sugimoto H.

Proteins. 2017 Dec;85(12):2217-2230. doi: 10.1002/prot.25386. Epub 2017 Sep 26.

PMID:
28913898
13.

Dynamics of nitric oxide controlled by protein complex in bacterial system.

Terasaka E, Yamada K, Wang PH, Hosokawa K, Yamagiwa R, Matsumoto K, Ishii S, Mori T, Yagi K, Sawai H, Arai H, Sugimoto H, Sugita Y, Shiro Y, Tosha T.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9888-9893. doi: 10.1073/pnas.1621301114. Epub 2017 Aug 28.

14.

Stool consistency is significantly associated with pain perception.

Shiro Y, Arai YC, Ikemoto T, Hayashi K.

PLoS One. 2017 Aug 9;12(8):e0182859. doi: 10.1371/journal.pone.0182859. eCollection 2017.

15.

Protein engineering of CYP105s for their industrial uses.

Yasuda K, Sugimoto H, Hayashi K, Takita T, Yasukawa K, Ohta M, Kamakura M, Ikushiro S, Shiro Y, Sakaki T.

Biochim Biophys Acta Proteins Proteom. 2018 Jan;1866(1):23-31. doi: 10.1016/j.bbapap.2017.05.014. Epub 2017 Jun 2. Review.

PMID:
28583351
16.

Direct Hydroxylation of Benzene to Phenol by Cytochrome P450BM3 Triggered by Amino Acid Derivatives.

Shoji O, Yanagisawa S, Stanfield JK, Suzuki K, Cong Z, Sugimoto H, Shiro Y, Watanabe Y.

Angew Chem Int Ed Engl. 2017 Aug 21;56(35):10324-10329. doi: 10.1002/anie.201703461. Epub 2017 Jun 8.

PMID:
28544674
17.

Relationship between biological factors and catastrophizing and clinical outcomes for female patients with knee osteoarthritis.

Ikemoto T, Miyagawa H, Shiro Y, Arai YP, Akao M, Murotani K, Ushida T, Deie M.

World J Orthop. 2017 Mar 18;8(3):278-285. doi: 10.5312/wjo.v8.i3.278. eCollection 2017 Mar 18.

18.

Production of an active form of vitamin D2 by genetically engineered CYP105A1.

Yasuda K, Yogo Y, Sugimoto H, Mano H, Takita T, Ohta M, Kamakura M, Ikushiro S, Yasukawa K, Shiro Y, Sakaki T.

Biochem Biophys Res Commun. 2017 Apr 29;486(2):336-341. doi: 10.1016/j.bbrc.2017.03.040. Epub 2017 Mar 14.

PMID:
28302483
19.

Crystal structure of bacterial haem importer complex in the inward-facing conformation.

Naoe Y, Nakamura N, Doi A, Sawabe M, Nakamura H, Shiro Y, Sugimoto H.

Nat Commun. 2016 Nov 10;7:13411. doi: 10.1038/ncomms13411.

20.

A Study of the Dynamics of the Heme Pocket and C-helix in CooA upon CO Dissociation Using Time-Resolved Visible and UV Resonance Raman Spectroscopy.

Otomo A, Ishikawa H, Mizuno M, Kimura T, Kubo M, Shiro Y, Aono S, Mizutani Y.

J Phys Chem B. 2016 Aug 18;120(32):7836-43. doi: 10.1021/acs.jpcb.6b05634. Epub 2016 Aug 5.

PMID:
27457181
21.

Regulatory Implications of Structural Changes in Tyr201 of the Oxygen Sensor Protein FixL.

Yamawaki T, Ishikawa H, Mizuno M, Nakamura H, Shiro Y, Mizutani Y.

Biochemistry. 2016 Jul 26;55(29):4027-35. doi: 10.1021/acs.biochem.6b00405. Epub 2016 Jul 11.

PMID:
27367650
22.

A nearly on-axis spectroscopic system for simultaneously measuring UV-visible absorption and X-ray diffraction in the SPring-8 structural genomics beamline.

Sakaguchi M, Kimura T, Nishida T, Tosha T, Sugimoto H, Yamaguchi Y, Yanagisawa S, Ueno G, Murakami H, Ago H, Yamamoto M, Ogura T, Shiro Y, Kubo M.

J Synchrotron Radiat. 2016 Jan;23(1):334-8. doi: 10.1107/S1600577515018275. Epub 2016 Jan 1.

23.

[Concept of the Pain Rehabilitation].

Matsubara T, Shiro Y, Shimo K.

Masui. 2015 Jul;64(7):709-17. Japanese.

PMID:
26422938
24.

Contribution of the distal pocket residue to the acyl-chain-length specificity of (R)-specific enoyl-coenzyme A hydratases from Pseudomonas spp.

Tsuge T, Sato S, Hiroe A, Ishizuka K, Kanazawa H, Shiro Y, Hisano T.

Appl Environ Microbiol. 2015 Dec;81(23):8076-83. doi: 10.1128/AEM.02412-15. Epub 2015 Sep 18.

25.

Structure of the response regulator ChrA in the haem-sensing two-component system of Corynebacterium diphtheriae.

Doi A, Nakamura H, Shiro Y, Sugimoto H.

Acta Crystallogr F Struct Biol Commun. 2015 Aug;71(Pt 8):966-71. doi: 10.1107/S2053230X15009838. Epub 2015 Jul 29.

26.

Initial O₂ Insertion Step of the Tryptophan Dioxygenase Reaction Proposed by a Heme-Modification Study.

Makino R, Obayashi E, Hori H, Iizuka T, Mashima K, Shiro Y, Ishimura Y.

Biochemistry. 2015 Jun 16;54(23):3604-16. doi: 10.1021/acs.biochem.5b00048. Epub 2015 Jun 2.

PMID:
25996254
27.

Structure-function analyses of cytochrome P450revI involved in reveromycin A biosynthesis and evaluation of the biological activity of its substrate, reveromycin T.

Takahashi S, Nagano S, Nogawa T, Kanoh N, Uramoto M, Kawatani M, Shimizu T, Miyazawa T, Shiro Y, Osada H.

J Biol Chem. 2014 Nov 21;289(47):32446-58. doi: 10.1074/jbc.M114.598391. Epub 2014 Sep 25.

28.

Palladium-nanoparticle-catalyzed 1,7-palladium migration involving C-H activation, followed by intramolecular amination: regioselective synthesis of N1-arylbenzotriazoles and an evaluation of their inhibitory activity toward indoleamine 2,3-dioxygenase.

Takagi K, Al-Amin M, Hoshiya N, Wouters J, Sugimoto H, Shiro Y, Fukuda H, Shuto S, Arisawa M.

J Org Chem. 2014 Jul 3;79(13):6366-71. doi: 10.1021/jo5009838. Epub 2014 Jun 24.

PMID:
24906179
29.

Distal traditional acupuncture points of the large intestinal meridian and the stomach meridian differently affect heart rate variability and oxygenation of the trapezius muscle.

Shiro Y, Arai YC, Ikemoto T, Kawai T, Ikeuchi M, Ushida T.

Evid Based Complement Alternat Med. 2014;2014:283010. doi: 10.1155/2014/283010. Epub 2014 Feb 19.

30.

Disulfide bonds regulate binding of exogenous ligand to human cytoglobin.

Tsujino H, Yamashita T, Nose A, Kukino K, Sawai H, Shiro Y, Uno T.

J Inorg Biochem. 2014 Jun;135:20-7. doi: 10.1016/j.jinorgbio.2014.02.011. Epub 2014 Mar 1.

PMID:
24632414
31.

Inhibition of heme uptake in Pseudomonas aeruginosa by its hemophore (HasA(p)) bound to synthetic metal complexes.

Shirataki C, Shoji O, Terada M, Ozaki S, Sugimoto H, Shiro Y, Watanabe Y.

Angew Chem Int Ed Engl. 2014 Mar 10;53(11):2862-6. doi: 10.1002/anie.201307889. Epub 2014 Feb 7.

PMID:
24604808
32.

Characterization of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus: enzymatic activity and active site structure.

Terasaka E, Okada N, Sato N, Sako Y, Shiro Y, Tosha T.

Biochim Biophys Acta. 2014 Jul;1837(7):1019-26. doi: 10.1016/j.bbabio.2014.02.017. Epub 2014 Feb 22.

33.

H2O2-dependent substrate oxidation by an engineered diiron site in a bacterial hemerythrin.

Okamoto Y, Onoda A, Sugimoto H, Takano Y, Hirota S, Kurtz DM Jr, Shiro Y, Hayashi T.

Chem Commun (Camb). 2014 Apr 4;50(26):3421-3. doi: 10.1039/c3cc48108e. Epub 2014 Jan 8.

34.

Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes.

Sato N, Ishii S, Sugimoto H, Hino T, Fukumori Y, Sako Y, Shiro Y, Tosha T.

Proteins. 2014 Jul;82(7):1258-71. doi: 10.1002/prot.24492. Epub 2014 Jan 15.

PMID:
24338896
35.

Crystal structure, exogenous ligand binding, and redox properties of an engineered diiron active site in a bacterial hemerythrin.

Okamoto Y, Onoda A, Sugimoto H, Takano Y, Hirota S, Kurtz DM Jr, Shiro Y, Hayashi T.

Inorg Chem. 2013 Nov 18;52(22):13014-20. doi: 10.1021/ic401632x. Epub 2013 Nov 4.

36.

Ultraviolet resonance Raman observations of the structural dynamics of rhizobial oxygen sensor FixL on ligand recognition.

Yano S, Ishikawa H, Mizuno M, Nakamura H, Shiro Y, Mizutani Y.

J Phys Chem B. 2013 Dec 12;117(49):15786-91. doi: 10.1021/jp406709e. Epub 2013 Aug 26.

PMID:
23941305
38.

Crystal structures of nitric oxide reductases provide key insights into functional conversion of respiratory enzymes.

Tosha T, Shiro Y.

IUBMB Life. 2013 Mar;65(3):217-26. doi: 10.1002/iub.1135. Epub 2013 Feb 3. Review.

39.

Acoustic impairment is a distinguishable clinical feature of Asidan/SCA36.

Ikeda Y, Ohta Y, Kurata T, Shiro Y, Takao Y, Abe K.

J Neurol Sci. 2013 Jan 15;324(1-2):109-12. doi: 10.1016/j.jns.2012.10.013. Epub 2012 Nov 7.

PMID:
23140984
40.

Interactions of soluble guanylate cyclase with a P-site inhibitor: effects of gaseous heme ligands, azide, and allosteric activators on the binding of 2'-deoxy-3'-GMP.

Makino R, Yazawa S, Hori H, Shiro Y.

Biochemistry. 2012 Nov 20;51(46):9277-89. doi: 10.1021/bi3004044. Epub 2012 Nov 9.

PMID:
23106307
41.

Coupling reaction of indolepyruvic acid by StaD and its product: implications for biosynthesis of indolocarbazole and violacein.

Asamizu S, Hirano S, Onaka H, Koshino H, Shiro Y, Nagano S.

Chembiochem. 2012 Nov 26;13(17):2495-500. doi: 10.1002/cbic.201200535. Epub 2012 Oct 18. No abstract available.

PMID:
23081937
42.

Molecular dynamics simulations reveal proton transfer pathways in cytochrome C-dependent nitric oxide reductase.

Pisliakov AV, Hino T, Shiro Y, Sugita Y.

PLoS Comput Biol. 2012;8(8):e1002674. doi: 10.1371/journal.pcbi.1002674. Epub 2012 Aug 30.

43.
44.

Structural basis for the transcriptional regulation of heme homeostasis in Lactococcus lactis.

Sawai H, Yamanaka M, Sugimoto H, Shiro Y, Aono S.

J Biol Chem. 2012 Aug 31;287(36):30755-68. doi: 10.1074/jbc.M112.370916. Epub 2012 Jul 13.

45.

Chiral-substrate-assisted stereoselective epoxidation catalyzed by H2O2-dependent cytochrome P450SPα.

Fujishiro T, Shoji O, Kawakami N, Watanabe T, Sugimoto H, Shiro Y, Watanabe Y.

Chem Asian J. 2012 Oct;7(10):2286-93. doi: 10.1002/asia.201200250. Epub 2012 Jun 14.

PMID:
22700535
46.
47.
48.

Structural basis for oxygen sensing and signal transduction of the heme-based sensor protein Aer2 from Pseudomonas aeruginosa.

Sawai H, Sugimoto H, Shiro Y, Ishikawa H, Mizutani Y, Aono S.

Chem Commun (Camb). 2012 Jul 4;48(52):6523-5. doi: 10.1039/c2cc32549g. Epub 2012 May 23.

PMID:
22622145
49.

Proton transfer in the quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus during reduction of oxygen.

Salomonsson L, Reimann J, Tosha T, Krause N, Gonska N, Shiro Y, Adelroth P.

Biochim Biophys Acta. 2012 Oct;1817(10):1914-20. doi: 10.1016/j.bbabio.2012.04.007. Epub 2012 Apr 17.

50.

Structural basis for nitrous oxide generation by bacterial nitric oxide reductases.

Shiro Y, Sugimoto H, Tosha T, Nagano S, Hino T.

Philos Trans R Soc Lond B Biol Sci. 2012 May 5;367(1593):1195-203. doi: 10.1098/rstb.2011.0310.

Supplemental Content

Support Center