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Items: 1 to 50 of 155

1.

High Impact Gene Discovery: Simple Strand-Specific mRNA Library Construction and Differential Regulatory Analysis Based on Gene Co-Expression Network.

Ichihashi Y, Fukushima A, Shibata A, Shirasu K.

Methods Mol Biol. 2018;1830:163-189. doi: 10.1007/978-1-4939-8657-6_11.

PMID:
30043371
2.

High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O.

Sato K, Kadota Y, Gan P, Bino T, Uehara T, Yamaguchi K, Ichihashi Y, Maki N, Iwahori H, Suzuki T, Shigenobu S, Shirasu K.

Genome Announc. 2018 Jun 28;6(26). pii: e00519-18. doi: 10.1128/genomeA.00519-18.

3.

Induced cell fate transitions at multiple cell layers configure haustorium development in parasitic plants.

Wakatake T, Yoshida S, Shirasu K.

Development. 2018 Jul 23;145(14). pii: dev164848. doi: 10.1242/dev.164848.

4.
5.

Same tune, different song-cytokinins as virulence factors in plant-pathogen interactions?

Spallek T, Gan P, Kadota Y, Shirasu K.

Curr Opin Plant Biol. 2018 Aug;44:82-87. doi: 10.1016/j.pbi.2018.03.002. Epub 2018 Mar 16. Review.

6.

Host lignin composition affects haustorium induction in the parasitic plants Phtheirospermum japonicum and Striga hermonthica.

Cui S, Wada S, Tobimatsu Y, Takeda Y, Saucet SB, Takano T, Umezawa T, Shirasu K, Yoshida S.

New Phytol. 2018 Apr;218(2):710-723. doi: 10.1111/nph.15033. Epub 2018 Mar 2.

PMID:
29498051
7.

Transcriptomic and Metabolomic Reprogramming from Roots to Haustoria in the Parasitic Plant, Thesium chinense.

Ichihashi Y, Kusano M, Kobayashi M, Suetsugu K, Yoshida S, Wakatake T, Kumaishi K, Shibata A, Saito K, Shirasu K.

Plant Cell Physiol. 2018 Apr 1;59(4):724-733. doi: 10.1093/pcp/pcx200.

8.

Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.

Uemura A, Yamaguchi N, Xu Y, Wee W, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Ito T.

Plant Reprod. 2018 Mar;31(1):89-105. doi: 10.1007/s00497-017-0315-0. Epub 2017 Dec 7.

PMID:
29218596
9.

The GYF domain protein PSIG1 dampens the induction of cell death during plant-pathogen interactions.

Matsui H, Nomura Y, Egusa M, Hamada T, Hyon GS, Kaminaka H, Watanabe Y, Ueda T, Trujillo M, Shirasu K, Nakagami H.

PLoS Genet. 2017 Oct 26;13(10):e1007037. doi: 10.1371/journal.pgen.1007037. eCollection 2017 Oct.

10.

Inappropriate Expression of an NLP Effector in Colletotrichum orbiculare Impairs Infection on Cucurbitaceae Cultivars via Plant Recognition of the C-Terminal Region.

Azmi NSA, Singkaravanit-Ogawa S, Ikeda K, Kitakura S, Inoue Y, Narusaka Y, Shirasu K, Kaido M, Mise K, Takano Y.

Mol Plant Microbe Interact. 2018 Jan;31(1):101-111. doi: 10.1094/MPMI-04-17-0085-FI. Epub 2017 Oct 23.

PMID:
29059009
11.

A calmodulin-like protein regulates plasmodesmal closure during bacterial immune responses.

Xu B, Cheval C, Laohavisit A, Hocking B, Chiasson D, Olsson TSG, Shirasu K, Faulkner C, Gilliham M.

New Phytol. 2017 Jul;215(1):77-84. doi: 10.1111/nph.14599. Epub 2017 May 17.

12.

Quinone oxidoreductase 2 is involved in haustorium development of the parasitic plant Phtheirospermum japonicum.

Ishida JK, Yoshida S, Shirasu K.

Plant Signal Behav. 2017 Jul 3;12(7):e1319029. doi: 10.1080/15592324.2017.1319029. Epub 2017 May 12.

13.

Interspecies hormonal control of host root morphology by parasitic plants.

Spallek T, Melnyk CW, Wakatake T, Zhang J, Sakamoto Y, Kiba T, Yoshida S, Matsunaga S, Sakakibara H, Shirasu K.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):5283-5288. doi: 10.1073/pnas.1619078114. Epub 2017 May 1.

14.

Regulation of Strigolactone Biosynthesis by Gibberellin Signaling.

Ito S, Yamagami D, Umehara M, Hanada A, Yoshida S, Sasaki Y, Yajima S, Kyozuka J, Ueguchi-Tanaka M, Matsuoka M, Shirasu K, Yamaguchi S, Asami T.

Plant Physiol. 2017 Jun;174(2):1250-1259. doi: 10.1104/pp.17.00301. Epub 2017 Apr 12.

15.

Strigolactones in Plant Interactions with Beneficial and Detrimental Organisms: The Yin and Yang.

López-Ráez JA, Shirasu K, Foo E.

Trends Plant Sci. 2017 Jun;22(6):527-537. doi: 10.1016/j.tplants.2017.03.011. Epub 2017 Apr 8. Review.

PMID:
28400173
16.

Draft Genome Assembly of Colletotrichum chlorophyti, a Pathogen of Herbaceous Plants.

Gan P, Narusaka M, Tsushima A, Narusaka Y, Takano Y, Shirasu K.

Genome Announc. 2017 Mar 9;5(10). pii: e01733-16. doi: 10.1128/genomeA.01733-16.

17.

Molecular Parasitic Plant-Host Interactions.

Saucet SB, Shirasu K.

PLoS Pathog. 2016 Dec 15;12(12):e1005978. doi: 10.1371/journal.ppat.1005978. eCollection 2016 Dec. Review. No abstract available.

18.

The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.

Yamada K, Yamaguchi K, Shirakawa T, Nakagami H, Mine A, Ishikawa K, Fujiwara M, Narusaka M, Narusaka Y, Ichimura K, Kobayashi Y, Matsui H, Nomura Y, Nomoto M, Tada Y, Fukao Y, Fukamizo T, Tsuda K, Shirasu K, Shibuya N, Kawasaki T.

EMBO J. 2016 Nov 15;35(22):2468-2483. Epub 2016 Sep 27.

19.

Local Auxin Biosynthesis Mediated by a YUCCA Flavin Monooxygenase Regulates Haustorium Development in the Parasitic Plant Phtheirospermum japonicum.

Ishida JK, Wakatake T, Yoshida S, Takebayashi Y, Kasahara H, Wafula E, dePamphilis CW, Namba S, Shirasu K.

Plant Cell. 2016 Aug;28(8):1795-814. doi: 10.1105/tpc.16.00310. Epub 2016 Jul 6.

20.

Genus-Wide Comparative Genome Analyses of Colletotrichum Species Reveal Specific Gene Family Losses and Gains during Adaptation to Specific Infection Lifestyles.

Gan P, Narusaka M, Kumakura N, Tsushima A, Takano Y, Narusaka Y, Shirasu K.

Genome Biol Evol. 2016 May 22;8(5):1467-81. doi: 10.1093/gbe/evw089.

21.

The Haustorium, a Specialized Invasive Organ in Parasitic Plants.

Yoshida S, Cui S, Ichihashi Y, Shirasu K.

Annu Rev Plant Biol. 2016 Apr 29;67:643-67. doi: 10.1146/annurev-arplant-043015-111702. Review.

PMID:
27128469
22.

Leucine zipper motif in RRS1 is crucial for the regulation of Arabidopsis dual resistance protein complex RPS4/RRS1.

Narusaka M, Toyoda K, Shiraishi T, Iuchi S, Takano Y, Shirasu K, Narusaka Y.

Sci Rep. 2016 Jan 11;6:18702. doi: 10.1038/srep18702.

23.

Haustorial Hairs Are Specialized Root Hairs That Support Parasitism in the Facultative Parasitic Plant Phtheirospermum japonicum.

Cui S, Wakatake T, Hashimoto K, Saucet SB, Toyooka K, Yoshida S, Shirasu K.

Plant Physiol. 2016 Mar;170(3):1492-503. doi: 10.1104/pp.15.01786. Epub 2015 Dec 28.

24.

WRKY Transcription Factors Phosphorylated by MAPK Regulate a Plant Immune NADPH Oxidase in Nicotiana benthamiana.

Adachi H, Nakano T, Miyagawa N, Ishihama N, Yoshioka M, Katou Y, Yaeno T, Shirasu K, Yoshioka H.

Plant Cell. 2015 Sep;27(9):2645-63. doi: 10.1105/tpc.15.00213. Epub 2015 Sep 15.

25.

Plant cells under siege: plant immune system versus pathogen effectors.

Asai S, Shirasu K.

Curr Opin Plant Biol. 2015 Dec;28:1-8. doi: 10.1016/j.pbi.2015.08.008. Epub 2015 Sep 3. Review.

PMID:
26343014
26.

PLANT EVOLUTION. Convergent evolution of strigolactone perception enabled host detection in parasitic plants.

Conn CE, Bythell-Douglas R, Neumann D, Yoshida S, Whittington B, Westwood JH, Shirasu K, Bond CS, Dyer KA, Nelson DC.

Science. 2015 Jul 31;349(6247):540-3. doi: 10.1126/science.aab1140.

27.

The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism.

Mutuku JM, Yoshida S, Shimizu T, Ichihashi Y, Wakatake T, Takahashi A, Seo M, Shirasu K.

Plant Physiol. 2015 Jul;168(3):1152-63. doi: 10.1104/pp.114.256404. Epub 2015 May 29.

28.

Regulation of the NADPH Oxidase RBOHD During Plant Immunity.

Kadota Y, Shirasu K, Zipfel C.

Plant Cell Physiol. 2015 Aug;56(8):1472-80. doi: 10.1093/pcp/pcv063. Epub 2015 May 4. Review.

PMID:
25941234
29.
30.

Arabidopsis dual resistance proteins, both RPS4 and RRS1, are required for resistance to bacterial wilt in transgenic Brassica crops.

Narusaka M, Hatakeyama K, Shirasu K, Narusaka Y.

Plant Signal Behav. 2014;9(7):e29130. doi: 10.4161/psb.29130.

31.

Transcriptomics exposes the uniqueness of parasitic plants.

Ichihashi Y, Mutuku JM, Yoshida S, Shirasu K.

Brief Funct Genomics. 2015 Jul;14(4):275-82. doi: 10.1093/bfgp/elv001. Epub 2015 Feb 19. Review.

PMID:
25700082
32.

Expression profiling during arabidopsis/downy mildew interaction reveals a highly-expressed effector that attenuates responses to salicylic acid.

Asai S, Rallapalli G, Piquerez SJ, Caillaud MC, Furzer OJ, Ishaque N, Wirthmueller L, Fabro G, Shirasu K, Jones JD.

PLoS Pathog. 2014 Oct 16;10(10):e1004443. doi: 10.1371/journal.ppat.1004443. eCollection 2014 Oct.

33.

Analysis of differential expression patterns of mRNA and protein during cold-acclimation and de-acclimation in Arabidopsis.

Nakaminami K, Matsui A, Nakagami H, Minami A, Nomura Y, Tanaka M, Morosawa T, Ishida J, Takahashi S, Uemura M, Shirasu K, Seki M.

Mol Cell Proteomics. 2014 Dec;13(12):3602-11. doi: 10.1074/mcp.M114.039081. Epub 2014 Oct 2.

34.

Arabidopsis dual resistance proteins, both RPS4 and RRS1, are required for resistance to bacterial wilt in transgenic Brassica crops.

Narusaka M, Hatakeyama K, Shirasu K, Narusaka Y.

Plant Signal Behav. 2014 May 15;9. pii: e29130. [Epub ahead of print]

PMID:
24832367
35.

Stitching together the Multiple Dimensions of Autophagy Using Metabolomics and Transcriptomics Reveals Impacts on Metabolism, Development, and Plant Responses to the Environment in Arabidopsis.

Masclaux-Daubresse C, Clément G, Anne P, Routaboul JM, Guiboileau A, Soulay F, Shirasu K, Yoshimoto K.

Plant Cell. 2014 May;26(5):1857-1877. Epub 2014 May 7.

36.

Plant GSK3 proteins regulate xylem cell differentiation downstream of TDIF-TDR signalling.

Kondo Y, Ito T, Nakagami H, Hirakawa Y, Saito M, Tamaki T, Shirasu K, Fukuda H.

Nat Commun. 2014 Mar 24;5:3504. doi: 10.1038/ncomms4504.

PMID:
24662460
37.

Direct regulation of the NADPH oxidase RBOHD by the PRR-associated kinase BIK1 during plant immunity.

Kadota Y, Sklenar J, Derbyshire P, Stransfeld L, Asai S, Ntoukakis V, Jones JD, Shirasu K, Menke F, Jones A, Zipfel C.

Mol Cell. 2014 Apr 10;54(1):43-55. doi: 10.1016/j.molcel.2014.02.021. Epub 2014 Mar 12.

38.

The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition.

Yi SY, Shirasu K, Moon JS, Lee SG, Kwon SY.

PLoS One. 2014 Feb 25;9(2):e88951. doi: 10.1371/journal.pone.0088951. eCollection 2014.

39.

Organ-specific quality control of plant peroxisomes is mediated by autophagy.

Yoshimoto K, Shibata M, Kondo M, Oikawa K, Sato M, Toyooka K, Shirasu K, Nishimura M, Ohsumi Y.

J Cell Sci. 2014 Mar 15;127(Pt 6):1161-8. doi: 10.1242/jcs.139709. Epub 2014 Jan 24.

40.

Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.

Sasaki-Sekimoto Y, Saito H, Masuda S, Shirasu K, Ohta H.

Plant Signal Behav. 2014;9(1):e27639. Epub 2014 Jan 6.

41.

The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation.

Lyons R, Iwase A, Gänsewig T, Sherstnev A, Duc C, Barton GJ, Hanada K, Higuchi-Takeuchi M, Matsui M, Sugimoto K, Kazan K, Simpson GG, Shirasu K.

Sci Rep. 2013 Oct 9;3:2866. doi: 10.1038/srep02866.

42.

D-Amino acid oxidase and presence of D-proline in Xenopus laevis.

Soma H, Furuya R, Kaneko R, Tsukamoto A, Shirasu K, Tanigawa M, Nagata Y.

Comp Biochem Physiol B Biochem Mol Biol. 2013 Oct;166(2):165-71. doi: 10.1016/j.cbpb.2013.08.004. Epub 2013 Aug 28.

PMID:
23994361
43.

A Munc13-like protein in Arabidopsis mediates H+-ATPase translocation that is essential for stomatal responses.

Hashimoto-Sugimoto M, Higaki T, Yaeno T, Nagami A, Irie M, Fujimi M, Miyamoto M, Akita K, Negi J, Shirasu K, Hasezawa S, Iba K.

Nat Commun. 2013;4:2215. doi: 10.1038/ncomms3215.

44.

Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis.

Sasaki-Sekimoto Y, Jikumaru Y, Obayashi T, Saito H, Masuda S, Kamiya Y, Ohta H, Shirasu K.

Plant Physiol. 2013 Sep;163(1):291-304. doi: 10.1104/pp.113.220129. Epub 2013 Jul 12.

45.

The genus Striga: a witch profile.

Spallek T, Mutuku M, Shirasu K.

Mol Plant Pathol. 2013 Dec;14(9):861-9. doi: 10.1111/mpp.12058. Epub 2013 Jul 10.

PMID:
23841683
46.

Glutathione and tryptophan metabolism are required for Arabidopsis immunity during the hypersensitive response to hemibiotrophs.

Hiruma K, Fukunaga S, Bednarek P, Pislewska-Bednarek M, Watanabe S, Narusaka Y, Shirasu K, Takano Y.

Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9589-94. doi: 10.1073/pnas.1305745110. Epub 2013 May 21.

47.

Breaking restricted taxonomic functionality by dual resistance genes.

Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y.

Plant Signal Behav. 2013 Jun;8(6):e24244. doi: 10.4161/psb.24244. Epub 2013 Mar 21.

48.

Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens.

Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, Nanasato Y, Tabei Y, Takano Y, Shirasu K, Narusaka Y.

PLoS One. 2013;8(2):e55954. doi: 10.1371/journal.pone.0055954. Epub 2013 Feb 20.

49.

The RXLR motif of oomycete effectors is not a sufficient element for binding to phosphatidylinositol monophosphates.

Yaeno T, Shirasu K.

Plant Signal Behav. 2013 Apr;8(4):e23865. doi: 10.4161/psb.23865. Epub 2013 Feb 20.

PMID:
23425855
50.

Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift of Colletotrichum fungi.

Gan P, Ikeda K, Irieda H, Narusaka M, O'Connell RJ, Narusaka Y, Takano Y, Kubo Y, Shirasu K.

New Phytol. 2013 Mar;197(4):1236-49. doi: 10.1111/nph.12085. Epub 2012 Dec 17.

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