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Items: 1 to 50 of 97

1.

SNP discovery of Korean short day onion inbred lines using double digest restriction site-associated DNA sequencing.

Lee JH, Natarajan S, Biswas MK, Shirasawa K, Isobe S, Kim HT, Park JI, Seong CN, Nou IS.

PLoS One. 2018 Aug 7;13(8):e0201229. doi: 10.1371/journal.pone.0201229. eCollection 2018.

2.

Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.).

Gayathri M, Shirasawa K, Varshney RK, Pandey MK, Bhat RS.

BMC Res Notes. 2018 Jan 8;11(1):10. doi: 10.1186/s13104-017-3121-8.

3.

Rapid identification of candidate genes for resistance to tomato late blight disease using next-generation sequencing technologies.

Arafa RA, Rakha MT, Soliman NEK, Moussa OM, Kamel SM, Shirasawa K.

PLoS One. 2017 Dec 18;12(12):e0189951. doi: 10.1371/journal.pone.0189951. eCollection 2017.

4.

Sequence analysis of cultivated strawberry (Fragaria × ananassa Duch.) using microdissected single somatic chromosomes.

Yanagi T, Shirasawa K, Terachi M, Isobe S.

Plant Methods. 2017 Oct 30;13:91. doi: 10.1186/s13007-017-0237-8. eCollection 2017.

5.

Mapping of important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut (Arachis hypogaea L.).

Hake AA, Shirasawa K, Yadawad A, Sukruth M, Patil M, Nayak SN, Lingaraju S, Patil PV, Nadaf HL, Gowda MVC, Bhat RS.

PLoS One. 2017 Oct 17;12(10):e0186113. doi: 10.1371/journal.pone.0186113. eCollection 2017.

6.

Climate Clever Clovers: New Paradigm to Reduce the Environmental Footprint of Ruminants by Breeding Low Methanogenic Forages Utilizing Haplotype Variation.

Kaur P, Appels R, Bayer PE, Keeble-Gagnere G, Wang J, Hirakawa H, Shirasawa K, Vercoe P, Stefanova K, Durmic Z, Nichols P, Revell C, Isobe SN, Edwards D, Erskine W.

Front Plant Sci. 2017 Sep 5;8:1463. doi: 10.3389/fpls.2017.01463. eCollection 2017.

7.

The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding.

Shirasawa K, Isuzugawa K, Ikenaga M, Saito Y, Yamamoto T, Hirakawa H, Isobe S.

DNA Res. 2017 Oct 1;24(5):499-508. doi: 10.1093/dnares/dsx020.

8.

Discrimination of candidate subgenome-specific loci by linkage map construction with an S1 population of octoploid strawberry (Fragaria × ananassa).

Nagano S, Shirasawa K, Hirakawa H, Maeda F, Ishikawa M, Isobe SN.

BMC Genomics. 2017 May 12;18(1):374. doi: 10.1186/s12864-017-3762-y.

9.

Corrigendum: Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.).

Mori K, Shirasawa K, Nogata H, Hirata C, Tashiro K, Habu T, Kim S, Himeno S, Kuhara S, Ikegami H.

Sci Rep. 2017 May 10;7:46784. doi: 10.1038/srep46784. No abstract available.

10.

Bayesian QTL mapping using genome-wide SSR markers and segregating population derived from a cross of two commercial F1 hybrids of tomato.

Ohyama A, Shirasawa K, Matsunaga H, Negoro S, Miyatake K, Yamaguchi H, Nunome T, Iwata H, Fukuoka H, Hayashi T.

Theor Appl Genet. 2017 Aug;130(8):1601-1616. doi: 10.1007/s00122-017-2913-5. Epub 2017 May 5.

PMID:
28477044
11.

Challenges to genome sequence dissection in sweetpotato.

Isobe S, Shirasawa K, Hirakawa H.

Breed Sci. 2017 Jan;67(1):35-40. doi: 10.1270/jsbbs.16186. Epub 2017 Feb 24. Review.

12.

A high-density SNP genetic map consisting of a complete set of homologous groups in autohexaploid sweetpotato (Ipomoea batatas).

Shirasawa K, Tanaka M, Takahata Y, Ma D, Cao Q, Liu Q, Zhai H, Kwak SS, Cheol Jeong J, Yoon UH, Lee HU, Hirakawa H, Isobe S.

Sci Rep. 2017 Mar 10;7:44207. doi: 10.1038/srep44207.

13.

Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.).

Mori K, Shirasawa K, Nogata H, Hirata C, Tashiro K, Habu T, Kim S, Himeno S, Kuhara S, Ikegami H.

Sci Rep. 2017 Jan 25;7:41124. doi: 10.1038/srep41124. Erratum in: Sci Rep. 2017 May 10;7:46784.

14.

Target Amplicon Sequencing for Genotyping Genome-Wide Single Nucleotide Polymorphisms Identified by Whole-Genome Resequencing in Peanut.

Shirasawa K, Kuwata C, Watanabe M, Fukami M, Hirakawa H, Isobe S.

Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2016.06.0052.

15.

Draft genome sequence of subterranean clover, a reference for genus Trifolium.

Hirakawa H, Kaur P, Shirasawa K, Nichols P, Nagano S, Appels R, Erskine W, Isobe SN.

Sci Rep. 2016 Aug 22;6:30358. doi: 10.1038/srep30358.

16.

Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and in silico optimization in tomato.

Shirasawa K, Hirakawa H, Isobe S.

DNA Res. 2016 Apr;23(2):145-53. doi: 10.1093/dnares/dsw004. Epub 2016 Feb 29.

17.

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P.

Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22.

PMID:
26901068
18.
19.

A simulation-based breeding design that uses whole-genome prediction in tomato.

Yamamoto E, Matsunaga H, Onogi A, Kajiya-Kanegae H, Minamikawa M, Suzuki A, Shirasawa K, Hirakawa H, Nunome T, Yamaguchi H, Miyatake K, Ohyama A, Iwata H, Fukuoka H.

Sci Rep. 2016 Jan 20;6:19454. doi: 10.1038/srep19454.

20.

Identification of QTLs for Rust Resistance in the Peanut Wild Species Arachis magna and the Development of KASP Markers for Marker-Assisted Selection.

Leal-Bertioli SC, Cavalcante U, Gouvea EG, Ballén-Taborda C, Shirasawa K, Guimarães PM, Jackson SA, Bertioli DJ, Moretzsohn MC.

G3 (Bethesda). 2015 May 5;5(7):1403-13. doi: 10.1534/g3.115.018796.

21.

Marker-assisted breeding of a LOX-3-null rice line with improved storability and resistance to preharvest sprouting.

Suzuki Y, Miura K, Shigemune A, Sasahara H, Ohta H, Uehara Y, Ishikawa T, Hamada S, Shirasawa K.

Theor Appl Genet. 2015 Jul;128(7):1421-30. doi: 10.1007/s00122-015-2516-y. Epub 2015 Apr 28.

PMID:
25917598
22.

Survey of genome sequences in a wild sweet potato, Ipomoea trifida (H. B. K.) G. Don.

Hirakawa H, Okada Y, Tabuchi H, Shirasawa K, Watanabe A, Tsuruoka H, Minami C, Nakayama S, Sasamoto S, Kohara M, Kishida Y, Fujishiro T, Kato M, Nanri K, Komaki A, Yoshinaga M, Takahata Y, Tanaka M, Tabata S, Isobe SN.

DNA Res. 2015 Apr;22(2):171-9. doi: 10.1093/dnares/dsv002. Epub 2015 Mar 24.

23.

Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis.

Leal-Bertioli S, Shirasawa K, Abernathy B, Moretzsohn M, Chavarro C, Clevenger J, Ozias-Akins P, Jackson S, Bertioli D.

Genetics. 2015 Apr;199(4):1093-105. doi: 10.1534/genetics.115.174607. Epub 2015 Feb 20.

24.

Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato.

Shirasawa K, Hirakawa H, Nunome T, Tabata S, Isobe S.

Plant Biotechnol J. 2016 Jan;14(1):51-60. doi: 10.1111/pbi.12348. Epub 2015 Feb 16.

25.

A reference genetic linkage map of apomictic Hieracium species based on expressed markers derived from developing ovule transcripts.

Shirasawa K, Hand ML, Henderson ST, Okada T, Johnson SD, Taylor JM, Spriggs A, Siddons H, Hirakawa H, Isobe S, Tabata S, Koltunow AM.

Ann Bot. 2015 Mar;115(4):567-80. doi: 10.1093/aob/mcu249. Epub 2014 Dec 22.

26.

Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.

Shirasawa K, Isobe S, Tabata S, Hirakawa H.

Breed Sci. 2014 Sep;64(3):264-71. doi: 10.1270/jsbbs.64.264. Epub 2014 Sep 1.

27.

Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba).

El-Rodeny W, Kimura M, Hirakawa H, Sabah A, Shirasawa K, Sato S, Tabata S, Sasamoto S, Watanabe A, Kawashima K, Kato M, Wada T, Tsuruoka H, Takahashi C, Minami C, Nanri K, Nakayama S, Kohara M, Yamada M, Kishida Y, Fujishiro T, Isobe S.

Breed Sci. 2014 Sep;64(3):252-63. doi: 10.1270/jsbbs.64.252. Epub 2014 Sep 1.

28.

Direct reduction may need to be considered to avoid postoperative subtype P in patients with an unstable trochanteric fracture: a retrospective study using a multivariate analysis.

Kozono N, Ikemura S, Yamashita A, Harada T, Watanabe T, Shirasawa K.

Arch Orthop Trauma Surg. 2014 Dec;134(12):1649-54. doi: 10.1007/s00402-014-2089-2. Epub 2014 Sep 27.

PMID:
25260901
29.

Draft genome sequence of eggplant (Solanum melongena L.): the representative solanum species indigenous to the old world.

Hirakawa H, Shirasawa K, Miyatake K, Nunome T, Negoro S, Ohyama A, Yamaguchi H, Sato S, Isobe S, Tabata S, Fukuoka H.

DNA Res. 2014 Dec;21(6):649-60. doi: 10.1093/dnares/dsu027. Epub 2014 Sep 18.

30.

Detection of genome donor species of neglected tetraploid crop Vigna reflexo-pilosa (créole bean), and genetic structure of diploid species based on newly developed EST-SSR markers from azuki bean (Vigna angularis).

Chankaew S, Isemura T, Isobe S, Kaga A, Tomooka N, Somta P, Hirakawa H, Shirasawa K, Vaughan DA, Srinives P.

PLoS One. 2014 Aug 25;9(8):e104990. doi: 10.1371/journal.pone.0104990. eCollection 2014.

31.

Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum).

Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A, Ezura H.

Plant J. 2014 Aug;79(3):453-65. doi: 10.1111/tpj.12570. Epub 2014 Jul 2.

32.

Draft sequences of the radish (Raphanus sativus L.) genome.

Kitashiba H, Li F, Hirakawa H, Kawanabe T, Zou Z, Hasegawa Y, Tonosaki K, Shirasawa S, Fukushima A, Yokoi S, Takahata Y, Kakizaki T, Ishida M, Okamoto S, Sakamoto K, Shirasawa K, Tabata S, Nishio T.

DNA Res. 2014 Oct;21(5):481-90. doi: 10.1093/dnares/dsu014. Epub 2014 May 16.

33.

Genome-wide comparative analysis of 20 miniature inverted-repeat transposable element families in Brassica rapa and B. oleracea.

Sampath P, Murukarthick J, Izzah NK, Lee J, Choi HI, Shirasawa K, Choi BS, Liu S, Nou IS, Yang TJ.

PLoS One. 2014 Apr 18;9(4):e94499. doi: 10.1371/journal.pone.0094499. eCollection 2014.

34.

A novel tomato mutant, Solanum lycopersicum elongated fruit1 (Slelf1), exhibits an elongated fruit shape caused by increased cell layers in the proximal region of the ovary.

Chusreeaeom K, Ariizumi T, Asamizu E, Okabe Y, Shirasawa K, Ezura H.

Mol Genet Genomics. 2014 Jun;289(3):399-409. doi: 10.1007/s00438-014-0822-8. Epub 2014 Feb 12.

PMID:
24519535
35.

Sequence analysis of the genome of carnation (Dianthus caryophyllus L.).

Yagi M, Kosugi S, Hirakawa H, Ohmiya A, Tanase K, Harada T, Kishimoto K, Nakayama M, Ichimura K, Onozaki T, Yamaguchi H, Sasaki N, Miyahara T, Nishizaki Y, Ozeki Y, Nakamura N, Suzuki T, Tanaka Y, Sato S, Shirasawa K, Isobe S, Miyamura Y, Watanabe A, Nakayama S, Kishida Y, Kohara M, Tabata S.

DNA Res. 2014 Jun;21(3):231-41. doi: 10.1093/dnares/dst053. Epub 2013 Dec 17.

36.

Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species.

Hirakawa H, Shirasawa K, Kosugi S, Tashiro K, Nakayama S, Yamada M, Kohara M, Watanabe A, Kishida Y, Fujishiro T, Tsuruoka H, Minami C, Sasamoto S, Kato M, Nanri K, Komaki A, Yanagi T, Guoxin Q, Maeda F, Ishikawa M, Kuhara S, Sato S, Tabata S, Isobe SN.

DNA Res. 2014;21(2):169-81. doi: 10.1093/dnares/dst049. Epub 2013 Nov 26.

37.

Three-dimensional analyses of proximal humeral fractures using computed tomography with multiplanar reconstruction: early stability of fixation after osteosynthesis in relation to preoperative bone quality.

Ueda K, Ikemura S, Yamashita A, Harada T, Watanabe T, Shirasawa K.

Eur J Orthop Surg Traumatol. 2014 Dec;24(8):1389-94. doi: 10.1007/s00590-013-1318-7. Epub 2013 Sep 17.

PMID:
24043369
38.

Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato.

Shirasawa K, Fukuoka H, Matsunaga H, Kobayashi Y, Kobayashi I, Hirakawa H, Isobe S, Tabata S.

DNA Res. 2013 Dec;20(6):593-603. doi: 10.1093/dnares/dst033. Epub 2013 Jul 31.

39.

DNA marker applications to molecular genetics and genomics in tomato.

Shirasawa K, Hirakawa H.

Breed Sci. 2013 Mar;63(1):21-30. doi: 10.1270/jsbbs.63.21. Epub 2013 Mar 1.

40.

Genome-wide SNP genotyping to infer the effects on gene functions in tomato.

Hirakawa H, Shirasawa K, Ohyama A, Fukuoka H, Aoki K, Rothan C, Sato S, Isobe S, Tabata S.

DNA Res. 2013 Jun;20(3):221-33. doi: 10.1093/dnares/dst005. Epub 2013 Mar 12.

41.

Development of Capsicum EST-SSR markers for species identification and in silico mapping onto the tomato genome sequence.

Shirasawa K, Ishii K, Kim C, Ban T, Suzuki M, Ito T, Muranaka T, Kobayashi M, Nagata N, Isobe S, Tabata S.

Mol Breed. 2013 Jan;31(1):101-110. Epub 2012 Aug 11.

42.

Integrated consensus map of cultivated peanut and wild relatives reveals structures of the A and B genomes of Arachis and divergence of the legume genomes.

Shirasawa K, Bertioli DJ, Varshney RK, Moretzsohn MC, Leal-Bertioli SC, Thudi M, Pandey MK, Rami JF, Foncéka D, Gowda MV, Qin H, Guo B, Hong Y, Liang X, Hirakawa H, Tabata S, Isobe S.

DNA Res. 2013 Apr;20(2):173-84. doi: 10.1093/dnares/dss042. Epub 2013 Jan 12.

43.

Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability.

Isobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S.

DNA Res. 2013 Feb;20(1):79-92. doi: 10.1093/dnares/dss035. Epub 2012 Dec 17.

44.

Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms.

Asamizu E, Shirasawa K, Hirakawa H, Sato S, Tabata S, Yano K, Ariizumi T, Shibata D, Ezura H.

Int J Plant Genomics. 2012;2012:437026. doi: 10.1155/2012/437026. Epub 2012 Nov 27.

45.

Availability of Micro-Tom mutant library combined with TILLING in molecular breeding of tomato fruit shelf-life.

Okabe Y, Asamizu E, Ariizumi T, Shirasawa K, Tabata S, Ezura H.

Breed Sci. 2012 Jun;62(2):202-8. doi: 10.1270/jsbbs.62.202. Epub 2012 Jun 19.

46.

Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis in Arachis spp.

Koilkonda P, Sato S, Tabata S, Shirasawa K, Hirakawa H, Sakai H, Sasamoto S, Watanabe A, Wada T, Kishida Y, Tsuruoka H, Fujishiro T, Yamada M, Kohara M, Suzuki S, Hasegawa M, Kiyoshima H, Isobe S.

Mol Breed. 2012 Jun;30(1):125-138. Epub 2011 Jun 24.

47.

In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut.

Shirasawa K, Koilkonda P, Aoki K, Hirakawa H, Tabata S, Watanabe M, Hasegawa M, Kiyoshima H, Suzuki S, Kuwata C, Naito Y, Kuboyama T, Nakaya A, Sasamoto S, Watanabe A, Kato M, Kawashima K, Kishida Y, Kohara M, Kurabayashi A, Takahashi C, Tsuruoka H, Wada T, Isobe S.

BMC Plant Biol. 2012 Jun 6;12:80. doi: 10.1186/1471-2229-12-80.

48.

Comparative Genetic Mapping and Discovery of Linkage Disequilibrium Across Linkage Groups in White Clover (Trifolium repens L.).

Isobe SN, Hisano H, Sato S, Hirakawa H, Okumura K, Shirasawa K, Sasamoto S, Watanabe A, Wada T, Kishida Y, Tsuruoka H, Fujishiro T, Yamada M, Kohara M, Tabata S.

G3 (Bethesda). 2012 May;2(5):607-17. doi: 10.1534/g3.112.002600. Epub 2012 May 1.

49.

Performance upgrade in the JAEA actinide science beamline BL23SU at SPring-8 with a new twin-helical undulator.

Saitoh Y, Fukuda Y, Takeda Y, Yamagami H, Takahashi S, Asano Y, Hara T, Shirasawa K, Takeuchi M, Tanaka T, Kitamura H.

J Synchrotron Radiat. 2012 May;19(Pt 3):388-93. doi: 10.1107/S0909049512006772. Epub 2012 Mar 17.

50.

Development of gene-based markers and construction of an integrated linkage map in eggplant by using Solanum orthologous (SOL) gene sets.

Fukuoka H, Miyatake K, Nunome T, Negoro S, Shirasawa K, Isobe S, Asamizu E, Yamaguchi H, Ohyama A.

Theor Appl Genet. 2012 Jun;125(1):47-56. doi: 10.1007/s00122-012-1815-9. Epub 2012 Feb 16.

PMID:
22350090

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