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Items: 1 to 50 of 76

1.

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin.

Montgomery SA, Tanizawa Y, Galik B, Wang N, Ito T, Mochizuki T, Akimcheva S, Bowman JL, Cognat V, Maréchal-Drouard L, Ekker H, Hong SF, Kohchi T, Lin SS, Liu LD, Nakamura Y, Valeeva LR, Shakirov EV, Shippen DE, Wei WL, Yagura M, Yamaoka S, Yamato KT, Liu C, Berger F.

Curr Biol. 2020 Jan 24. pii: S0960-9822(19)31610-0. doi: 10.1016/j.cub.2019.12.015. [Epub ahead of print]

2.

Components of the ribosome biogenesis pathway underlie establishment of telomere length set point in Arabidopsis.

Abdulkina LR, Kobayashi C, Lovell JT, Chastukhina IB, Aklilu BB, Agabekian IA, Suescún AV, Valeeva LR, Nyamsuren C, Aglyamova GV, Sharipova MR, Shippen DE, Juenger TE, Shakirov EV.

Nat Commun. 2019 Dec 2;10(1):5479. doi: 10.1038/s41467-019-13448-z.

3.

The conserved structure of plant telomerase RNA provides the missing link for an evolutionary pathway from ciliates to humans.

Song J, Logeswaran D, Castillo-González C, Li Y, Bose S, Aklilu BB, Ma Z, Polkhovskiy A, Chen JJ, Shippen DE.

Proc Natl Acad Sci U S A. 2019 Dec 3;116(49):24542-24550. doi: 10.1073/pnas.1915312116. Epub 2019 Nov 21.

PMID:
31754031
4.

Back to the future: The intimate and evolving connection between telomere-related factors and genotoxic stress.

Barbero Barcenilla B, Shippen DE.

J Biol Chem. 2019 Oct 4;294(40):14803-14813. doi: 10.1074/jbc.AW119.008145. Epub 2019 Aug 21. Review.

5.

Recent emergence and extinction of the protection of telomeres 1c gene in Arabidopsis thaliana.

Kobayashi CR, Castillo-González C, Survotseva Y, Canal E, Nelson ADL, Shippen DE.

Plant Cell Rep. 2019 Sep;38(9):1081-1097. doi: 10.1007/s00299-019-02427-9. Epub 2019 May 27.

PMID:
31134349
6.

DDM1 guards against telomere truncation in Arabidopsis.

Xie X, Shippen DE.

Plant Cell Rep. 2018 Mar;37(3):501-513. doi: 10.1007/s00299-017-2245-6. Epub 2018 Feb 1.

7.

Evolution of Arabidopsis protection of telomeres 1 alters nucleic acid recognition and telomerase regulation.

Arora A, Beilstein MA, Shippen DE.

Nucleic Acids Res. 2016 Nov 16;44(20):9821-9830. Epub 2016 Sep 19.

8.

Dynamic Interactions of Arabidopsis TEN1: Stabilizing Telomeres in Response to Heat Stress.

Lee JR, Xie X, Yang K, Zhang J, Lee SY, Shippen DE.

Plant Cell. 2016 Sep;28(9):2212-2224. doi: 10.1105/tpc.16.00408. Epub 2016 Sep 8.

9.

Evolution of TERT-interacting lncRNAs: expanding the regulatory landscape of telomerase.

Nelson AD, Shippen DE.

Front Genet. 2015 Sep 10;6:277. doi: 10.3389/fgene.2015.00277. eCollection 2015. Review.

10.

A transposable element within the Non-canonical telomerase RNA of Arabidopsis thaliana modulates telomerase in response to DNA damage [corrected].

Xu H, Nelson AD, Shippen DE.

PLoS Genet. 2015 Jun 15;11(6):e1005281. doi: 10.1371/journal.pgen.1005281. eCollection 2015 Jun. Erratum in: PLoS Genet. 2015 Aug;11(8):e1005417.

11.

Single-cell telomere-length quantification couples telomere length to meristem activity and stem cell development in Arabidopsis.

González-García MP, Pavelescu I, Canela A, Sevillano X, Leehy KA, Nelson ADL, Ibañes M, Shippen DE, Blasco MA, Caño-Delgado AI.

Cell Rep. 2015 May 12;11(6):977-989. doi: 10.1016/j.celrep.2015.04.013. Epub 2015 Apr 30.

12.

Evolution of the Telomere-Associated Protein POT1a in Arabidopsis thaliana Is Characterized by Positive Selection to Reinforce Protein-Protein Interaction.

Beilstein MA, Renfrew KB, Song X, Shakirov EV, Zanis MJ, Shippen DE.

Mol Biol Evol. 2015 May;32(5):1329-41. doi: 10.1093/molbev/msv025. Epub 2015 Feb 19.

13.

POT1a and components of CST engage telomerase and regulate its activity in Arabidopsis.

Renfrew KB, Song X, Lee JR, Arora A, Shippen DE.

PLoS Genet. 2014 Oct 16;10(10):e1004738. doi: 10.1371/journal.pgen.1004738. eCollection 2014 Oct.

14.

Analysis of poly(ADP-Ribose) polymerases in Arabidopsis telomere biology.

Boltz KA, Jasti M, Townley JM, Shippen DE.

PLoS One. 2014 Feb 13;9(2):e88872. doi: 10.1371/journal.pone.0088872. eCollection 2014.

15.

MERISTEM DISORGANIZATION1 encodes TEN1, an essential telomere protein that modulates telomerase processivity in Arabidopsis.

Leehy KA, Lee JR, Song X, Renfrew KB, Shippen DE.

Plant Cell. 2013 Apr;25(4):1343-54. doi: 10.1105/tpc.112.107425. Epub 2013 Apr 9.

16.

Surprises from the chromosome front: lessons from Arabidopsis on telomeres and telomerase.

Nelson AD, Shippen DE.

Cold Spring Harb Symp Quant Biol. 2012;77:7-15. doi: 10.1101/sqb.2013.77.017053. Epub 2013 Mar 4.

17.

An alternative telomerase RNA in Arabidopsis modulates enzyme activity in response to DNA damage.

Cifuentes-Rojas C, Nelson AD, Boltz KA, Kannan K, She X, Shippen DE.

Genes Dev. 2012 Nov 15;26(22):2512-23. doi: 10.1101/gad.202960.112. Epub 2012 Oct 29.

18.

Evolution of the Arabidopsis telomerase RNA.

Beilstein MA, Brinegar AE, Shippen DE.

Front Genet. 2012 Sep 24;3:188. eCollection 2012.

19.

Blunt-ended telomeres: an alternative ending to the replication and end protection stories.

Nelson AD, Shippen DE.

Genes Dev. 2012 Aug 1;26(15):1648-52. doi: 10.1101/gad.199059.112.

20.

Selaginella moellendorffii telomeres: conserved and unique features in an ancient land plant lineage.

Shakirov EV, Shippen DE.

Front Plant Sci. 2012 Jul 19;3:161. doi: 10.3389/fpls.2012.00161. eCollection 2012.

21.

ATR cooperates with CTC1 and STN1 to maintain telomeres and genome integrity in Arabidopsis.

Boltz KA, Leehy K, Song X, Nelson AD, Shippen DE.

Mol Biol Cell. 2012 Apr;23(8):1558-68. doi: 10.1091/mbc.E11-12-1002. Epub 2012 Feb 22.

22.

Telomerase regulation.

Cifuentes-Rojas C, Shippen DE.

Mutat Res. 2012 Feb 1;730(1-2):20-7. doi: 10.1016/j.mrfmmm.2011.10.003. Epub 2011 Oct 18. Review.

23.

Parameters affecting telomere-mediated chromosomal truncation in Arabidopsis.

Nelson AD, Lamb JC, Kobrossly PS, Shippen DE.

Plant Cell. 2011 Jun;23(6):2263-72. doi: 10.1105/tpc.111.086017. Epub 2011 Jun 7.

24.

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.

Science. 2011 May 20;332(6032):960-3. doi: 10.1126/science.1203810. Epub 2011 May 5.

25.

Two RNA subunits and POT1a are components of Arabidopsis telomerase.

Cifuentes-Rojas C, Kannan K, Tseng L, Shippen DE.

Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):73-78. doi: 10.1073/pnas.1013021107. Epub 2010 Dec 16. Retraction in: Proc Natl Acad Sci U S A. 2019 Dec 3;116(49):24908.

26.

Evolution of CST function in telomere maintenance.

Price CM, Boltz KA, Chaiken MF, Stewart JA, Beilstein MA, Shippen DE.

Cell Cycle. 2010 Aug 15;9(16):3157-65. doi: 10.4161/cc.9.16.12547. Epub 2010 Aug 26. Review.

27.

Protection of Telomeres 1 is required for telomere integrity in the moss Physcomitrella patens.

Shakirov EV, Perroud PF, Nelson AD, Cannell ME, Quatrano RS, Shippen DE.

Plant Cell. 2010 Jun;22(6):1838-48. doi: 10.1105/tpc.110.075846. Epub 2010 Jun 1.

28.

Conserved telomere maintenance component 1 interacts with STN1 and maintains chromosome ends in higher eukaryotes.

Surovtseva YV, Churikov D, Boltz KA, Song X, Lamb JC, Warrington R, Leehy K, Heacock M, Price CM, Shippen DE.

Mol Cell. 2009 Oct 23;36(2):207-18. doi: 10.1016/j.molcel.2009.09.017.

29.

POT1 proteins in green algae and land plants: DNA-binding properties and evidence of co-evolution with telomeric DNA.

Shakirov EV, Song X, Joseph JA, Shippen DE.

Nucleic Acids Res. 2009 Dec;37(22):7455-67. doi: 10.1093/nar/gkp785.

30.

POT1-independent single-strand telomeric DNA binding activities in Brassicaceae.

Shakirov EV, McKnight TD, Shippen DE.

Plant J. 2009 Jun;58(6):1004-15. doi: 10.1111/j.1365-313X.2009.03837.x. Epub 2009 Feb 18.

31.

STN1 protects chromosome ends in Arabidopsis thaliana.

Song X, Leehy K, Warrington RT, Lamb JC, Surovtseva YV, Shippen DE.

Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19815-20. doi: 10.1073/pnas.0807867105. Epub 2008 Dec 8.

32.
33.

Arabidopsis SMG7 protein is required for exit from meiosis.

Riehs N, Akimcheva S, Puizina J, Bulankova P, Idol RA, Siroky J, Schleiffer A, Schweizer D, Shippen DE, Riha K.

J Cell Sci. 2008 Jul 1;121(Pt 13):2208-16. doi: 10.1242/jcs.027862. Epub 2008 Jun 10.

34.

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Pérez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M.

Nature. 2008 Apr 24;452(7190):991-6. doi: 10.1038/nature06856.

35.

Dyskerin is a component of the Arabidopsis telomerase RNP required for telomere maintenance.

Kannan K, Nelson AD, Shippen DE.

Mol Cell Biol. 2008 Apr;28(7):2332-41. doi: 10.1128/MCB.01490-07. Epub 2008 Jan 22.

36.

ATM regulates the length of individual telomere tracts in Arabidopsis.

Vespa L, Warrington RT, Mokros P, Siroky J, Shippen DE.

Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18145-50. Epub 2007 Nov 7.

37.

Telomere dynamics and fusion of critically shortened telomeres in plants lacking DNA ligase IV.

Heacock ML, Idol RA, Friesner JD, Britt AB, Shippen DE.

Nucleic Acids Res. 2007;35(19):6490-500. Epub 2007 Sep 25.

38.

Arabidopsis POT1 associates with the telomerase RNP and is required for telomere maintenance.

Surovtseva YV, Shakirov EV, Vespa L, Osbun N, Song X, Shippen DE.

EMBO J. 2007 Aug 8;26(15):3653-61. Epub 2007 Jul 12.

39.

Telomere rapid deletion regulates telomere length in Arabidopsis thaliana.

Watson JM, Shippen DE.

Mol Cell Biol. 2007 Mar;27(5):1706-15. Epub 2006 Dec 22.

40.

The role of the nonhomologous end-joining DNA double-strand break repair pathway in telomere biology.

Riha K, Heacock ML, Shippen DE.

Annu Rev Genet. 2006;40:237-77. Review.

PMID:
16822175
41.
42.

Telomerase-independent cell survival in Arabidopsis thaliana.

Watson JM, Bulankova P, Riha K, Shippen DE, Vyskot B.

Plant J. 2005 Sep;43(5):662-74.

43.

The Arabidopsis Pot1 and Pot2 proteins function in telomere length homeostasis and chromosome end protection.

Shakirov EV, Surovtseva YV, Osbun N, Shippen DE.

Mol Cell Biol. 2005 Sep;25(17):7725-33.

44.

TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis.

Ren S, Johnston JS, Shippen DE, McKnight TD.

Plant Cell. 2004 Nov;16(11):2910-22. Epub 2004 Oct 14.

45.

A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis.

Karamysheva ZN, Surovtseva YV, Vespa L, Shakirov EV, Shippen DE.

J Biol Chem. 2004 Nov 12;279(46):47799-807. Epub 2004 Sep 10.

46.

Length regulation and dynamics of individual telomere tracts in wild-type Arabidopsis.

Shakirov EV, Shippen DE.

Plant Cell. 2004 Aug;16(8):1959-67. Epub 2004 Jul 16.

47.

Molecular analysis of telomere fusions in Arabidopsis: multiple pathways for chromosome end-joining.

Heacock M, Spangler E, Riha K, Puizina J, Shippen DE.

EMBO J. 2004 Jun 2;23(11):2304-13. Epub 2004 May 13.

48.

Plant telomere biology.

McKnight TD, Shippen DE.

Plant Cell. 2004 Apr;16(4):794-803. No abstract available.

49.

Rearrangements of ribosomal DNA clusters in late generation telomerase-deficient Arabidopsis.

Siroky J, Zluvova J, Riha K, Shippen DE, Vyskot B.

Chromosoma. 2003 Oct;112(3):116-23. Epub 2003 Sep 17.

PMID:
14579127
50.

Developmentally programmed gene elimination in Euplotes crassus facilitates a switch in the telomerase catalytic subunit.

Karamysheva Z, Wang L, Shrode T, Bednenko J, Hurley LA, Shippen DE.

Cell. 2003 May 30;113(5):565-76.

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