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Items: 1 to 50 of 305

1.

HIV-1 is more dependent on the K182 capsid residue than HIV-2 for interactions with CPSF6.

Saito A, Ode H, Nohata K, Ohmori H, Nakayama EE, Iwatani Y, Shioda T.

Virology. 2019 Apr 27;532:118-126. doi: 10.1016/j.virol.2019.04.012. [Epub ahead of print]

PMID:
31071616
2.
3.

Defects in assembly explain reduced antiviral activity of the G249D polymorphism in human TRIM5α.

Kömürlü S, Bradley M, Smolin N, Imam S, Pauszek RF 3rd, Robia SL, Millar D, Nakayama EE, Shioda T, Campbell EM.

PLoS One. 2019 Mar 19;14(3):e0212888. doi: 10.1371/journal.pone.0212888. eCollection 2019.

4.

COX-2 mediates tumor-stromal prolactin signaling to initiate tumorigenesis.

Zheng Y, Comaills V, Burr R, Boulay G, Miyamoto DT, Wittner BS, Emmons E, Sil S, Koulopoulos MW, Broderick KT, Tai E, Rengarajan S, Kulkarni AS, Shioda T, Wu CL, Ramaswamy S, Ting DT, Toner M, Rivera MN, Maheswaran S, Haber DA.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5223-5232. doi: 10.1073/pnas.1819303116. Epub 2019 Feb 28.

5.

Generation of Human Primordial Germ Cell-like Cells at the Surface of Embryoid Bodies from Primed-pluripotency Induced Pluripotent Stem Cells.

Mitsunaga S, Shioda K, Isselbacher KJ, Hanna JH, Shioda T.

J Vis Exp. 2019 Jan 11;(143). doi: 10.3791/58297.

PMID:
30688291
6.

Broad-spectrum monoclonal antibodies against chikungunya virus structural proteins: Promising candidates for antibody-based rapid diagnostic test development.

Tuekprakhon A, Puiprom O, Sasaki T, Michiels J, Bartholomeeusen K, Nakayama EE, Meno MK, Phadungsombat J, Huits R, Ariën KK, Luplertlop N, Shioda T, Leaungwutiwong P.

PLoS One. 2018 Dec 17;13(12):e0208851. doi: 10.1371/journal.pone.0208851. eCollection 2018.

7.

Reduced body weight at weaning followed by increased post-weaning growth rate interacts with part-per-trillion fetal serum concentrations of bisphenol A (BPA) to impair glucose tolerance in male mice.

Taylor JA, Sommerfeld-Sager JM, Meng CX, Nagel SC, Shioda T, Vom Saal FS.

PLoS One. 2018 Dec 17;13(12):e0208846. doi: 10.1371/journal.pone.0208846. eCollection 2018.

8.

Emergence of genotype Cosmopolitan of dengue virus type 2 and genotype III of dengue virus type 3 in Thailand.

Phadungsombat J, Lin MY, Srimark N, Yamanaka A, Nakayama EE, Moolasart V, Suttha P, Shioda T, Uttayamakul S.

PLoS One. 2018 Nov 12;13(11):e0207220. doi: 10.1371/journal.pone.0207220. eCollection 2018.

9.

Relationship between genome packaging and Gag translation/AUG of primate lentiviruses.

Sakuragi S, Shioda T, Sakuragi JI.

Microbes Infect. 2019 Mar;21(2):119-123. doi: 10.1016/j.micinf.2018.09.002. Epub 2018 Oct 4.

10.

External Quality Assessment Scheme for HIV-1 Drug-Resistance Genotyping in Thailand.

Saeng-Aroon S, Saipradit N, Loket R, Klamkhai N, Boonmuang R, Kaewprommal P, Prommajan K, Takeda N, Sungkanuparph S, Shioda T, Sangkitporn S, Motomura K.

AIDS Res Hum Retroviruses. 2018 Dec;34(12):1028-1035. doi: 10.1089/AID.2017.0299. Epub 2018 Nov 10.

PMID:
30215266
11.

Pyrosequencing Methylation Analysis.

Poulin M, Zhou JY, Yan L, Shioda T.

Methods Mol Biol. 2018;1856:283-296. doi: 10.1007/978-1-4939-8751-1_17.

PMID:
30178259
12.

Multiple polymerase gene mutations for human adaptation occurring in Asian H5N1 influenza virus clinical isolates.

Arai Y, Kawashita N, Hotta K, Hoang PVM, Nguyen HLK, Nguyen TC, Vuong CD, Le TT, Le MTQ, Soda K, Ibrahim MS, Daidoji T, Takagi T, Shioda T, Nakaya T, Ito T, Hasebe F, Watanabe Y.

Sci Rep. 2018 Aug 30;8(1):13066. doi: 10.1038/s41598-018-31397-3.

13.

Reduced MEK inhibition preserves genomic stability in naive human embryonic stem cells.

Di Stefano B, Ueda M, Sabri S, Brumbaugh J, Huebner AJ, Sahakyan A, Clement K, Clowers KJ, Erickson AR, Shioda K, Gygi SP, Gu H, Shioda T, Meissner A, Takashima Y, Plath K, Hochedlinger K.

Nat Methods. 2018 Sep;15(9):732-740. doi: 10.1038/s41592-018-0104-1. Epub 2018 Aug 20.

14.

RARγ is required for mesodermal gene expression prior to gastrulation in Xenopus.

Janesick A, Tang W, Shioda T, Blumberg B.

Development. 2018 Sep 17;145(18). pii: dev147769. doi: 10.1242/dev.147769.

15.

Retinoid X Receptor Activation During Adipogenesis of Female Mesenchymal Stem Cells Programs a Dysfunctional Adipocyte.

Shoucri BM, Hung VT, Chamorro-García R, Shioda T, Blumberg B.

Endocrinology. 2018 Aug 1;159(8):2863-2883. doi: 10.1210/en.2018-00056.

PMID:
29860300
16.

Evolutionarily diverse mechanisms of germline specification among mammals: what about us?

Mitsunaga S, Shioda T.

Stem Cell Investig. 2018 Apr 24;5:12. doi: 10.21037/sci.2018.04.03. eCollection 2018. No abstract available.

17.

Evaluation of an immunochromatography rapid diagnosis kit for detection of chikungunya virus antigen in India, a dengue-endemic country.

Jain J, Okabayashi T, Kaur N, Nakayama E, Shioda T, Gaind R, Kurosu T, Sunil S.

Virol J. 2018 May 11;15(1):84. doi: 10.1186/s12985-018-1000-0.

18.

MECP2 mutation in a boy with severe apnea and sick sinus syndrome.

Shioda T, Takahashi S, Kaname T, Yamauchi T, Fukuoka T.

Brain Dev. 2018 Sep;40(8):714-718. doi: 10.1016/j.braindev.2018.03.008. Epub 2018 Apr 7.

PMID:
29631775
19.

Characterization of H5N1 Influenza Virus Quasispecies with Adaptive Hemagglutinin Mutations from Single-Virus Infections of Human Airway Cells.

Watanabe Y, Arai Y, Kawashita N, Ibrahim MS, Elgendy EM, Daidoji T, Kajikawa J, Hiramatsu H, Sriwilaijaroen N, Ono T, Takagi T, Takahashi K, Shioda T, Matsumoto K, Suzuki Y, Nakaya T.

J Virol. 2018 May 14;92(11). pii: e02004-17. doi: 10.1128/JVI.02004-17. Print 2018 Jun 1.

20.

AR Expression in Breast Cancer CTCs Associates with Bone Metastases.

Aceto N, Bardia A, Wittner BS, Donaldson MC, O'Keefe R, Engstrom A, Bersani F, Zheng Y, Comaills V, Niederhoffer K, Zhu H, Mackenzie O, Shioda T, Sgroi D, Kapur R, Ting DT, Moy B, Ramaswamy S, Toner M, Haber DA, Maheswaran S.

Mol Cancer Res. 2018 Apr;16(4):720-727. doi: 10.1158/1541-7786.MCR-17-0480. Epub 2018 Feb 16.

21.

Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection.

Owa C, Poulin M, Yan L, Shioda T.

PLoS One. 2018 Feb 8;13(2):e0192722. doi: 10.1371/journal.pone.0192722. eCollection 2018.

22.

Variation at position 350 in the Chikungunya virus 6K-E1 protein determines the sensitivity of detection in a rapid E1-antigen test.

Tuekprakhon A, Nakayama EE, Bartholomeeusen K, Puiprom O, Sasaki T, Huits R, Luplertlop N, Kosoltanapiwat N, Maneekan P, Ariën KK, Shioda T, Leaungwutiwong P.

Sci Rep. 2018 Jan 18;8(1):1094. doi: 10.1038/s41598-018-19174-8.

23.

Naturally Occurring Mutations in HIV-1 CRF01_AE Capsid Affect Viral Sensitivity to Restriction Factors.

Nakayama EE, Saito A, Sultana T, Jin Z, Nohata K, Shibata M, Hosoi M, Motomura K, Shioda T, Sangkitporn S, Loket R, Saeng-Aroon S.

AIDS Res Hum Retroviruses. 2018 Apr;34(4):382-392. doi: 10.1089/AID.2017.0212. Epub 2018 Feb 13.

24.

Ancestral perinatal obesogen exposure results in a transgenerational thrifty phenotype in mice.

Chamorro-Garcia R, Diaz-Castillo C, Shoucri BM, Käch H, Leavitt R, Shioda T, Blumberg B.

Nat Commun. 2017 Dec 8;8(1):2012. doi: 10.1038/s41467-017-01944-z.

25.

Prenatal Exposure to Bisphenol A Disrupts Naturally Occurring Bimodal DNA Methylation at Proximal Promoter of fggy, an Obesity-Relevant Gene Encoding a Carbohydrate Kinase, in Gonadal White Adipose Tissues of CD-1 Mice.

Taylor JA, Shioda K, Mitsunaga S, Yawata S, Angle BM, Nagel SC, Vom Saal FS, Shioda T.

Endocrinology. 2018 Feb 1;159(2):779-794. doi: 10.1210/en.2017-00711.

26.

Relevance of iPSC-derived human PGC-like cells at the surface of embryoid bodies to prechemotaxis migrating PGCs.

Mitsunaga S, Odajima J, Yawata S, Shioda K, Owa C, Isselbacher KJ, Hanna JH, Shioda T.

Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):E9913-E9922. doi: 10.1073/pnas.1707779114. Epub 2017 Oct 30.

27.

Retinoid X Receptor Activation Alters the Chromatin Landscape To Commit Mesenchymal Stem Cells to the Adipose Lineage.

Shoucri BM, Martinez ES, Abreo TJ, Hung VT, Moosova Z, Shioda T, Blumberg B.

Endocrinology. 2017 Oct 1;158(10):3109-3125. doi: 10.1210/en.2017-00348.

28.

Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells.

Choi J, Huebner AJ, Clement K, Walsh RM, Savol A, Lin K, Gu H, Di Stefano B, Brumbaugh J, Kim SY, Sharif J, Rose CM, Mohammad A, Odajima J, Charron J, Shioda T, Gnirke A, Gygi S, Koseki H, Sadreyev RI, Xiao A, Meissner A, Hochedlinger K.

Nature. 2017 Aug 10;548(7666):219-223. doi: 10.1038/nature23274. Epub 2017 Jul 26.

29.

Recurrent and functional regulatory mutations in breast cancer.

Rheinbay E, Parasuraman P, Grimsby J, Tiao G, Engreitz JM, Kim J, Lawrence MS, Taylor-Weiner A, Rodriguez-Cuevas S, Rosenberg M, Hess J, Stewart C, Maruvka YE, Stojanov P, Cortes ML, Seepo S, Cibulskis C, Tracy A, Pugh TJ, Lee J, Zheng Z, Ellisen LW, Iafrate AJ, Boehm JS, Gabriel SB, Meyerson M, Golub TR, Baselga J, Hidalgo-Miranda A, Shioda T, Bernards A, Lander ES, Getz G.

Nature. 2017 Jul 6;547(7661):55-60. doi: 10.1038/nature22992. Epub 2017 Jun 28.

30.

Isolation and functional interrogation of adult human prostate epithelial stem cells at single cell resolution.

Hu WY, Hu DP, Xie L, Li Y, Majumdar S, Nonn L, Hu H, Shioda T, Prins GS.

Stem Cell Res. 2017 Aug;23:1-12. doi: 10.1016/j.scr.2017.06.009. Epub 2017 Jun 16.

31.

Diagnostic accuracy of a rapid E1-antigen test for chikungunya virus infection in a reference setting.

Huits R, Okabayashi T, Cnops L, Barbé B, Van Den Berg R, Bartholomeeusen K, Ariën KK, Jacobs J, Bottieau E, Nakayama EE, Shioda T, Van Esbroeck M.

Clin Microbiol Infect. 2018 Jan;24(1):78-81. doi: 10.1016/j.cmi.2017.06.004. Epub 2017 Jun 9.

32.

Sequence diversity of dengue virus type 2 in brain and thymus of infected interferon receptor ko mice: implications for dengue virulence.

Dhole P, Nakayama EE, Saito A, Limkittikul K, Phanthanawiboon S, Shioda T, Kurosu T.

Virol J. 2016 Nov 30;13(1):199.

33.

SL1 revisited: functional analysis of the structure and conformation of HIV-1 genome RNA.

Sakuragi S, Yokoyama M, Shioda T, Sato H, Sakuragi JI.

Retrovirology. 2016 Nov 11;13(1):79.

34.

Critical Contribution of Tyr15 in the HIV-1 Integrase (IN) in Facilitating IN Assembly and Nonenzymatic Function through the IN Precursor Form with Reverse Transcriptase.

Takahata T, Takeda E, Tobiume M, Tokunaga K, Yokoyama M, Huang YL, Hasegawa A, Shioda T, Sato H, Kannagi M, Masuda T.

J Virol. 2016 Dec 16;91(1). pii: e02003-16. doi: 10.1128/JVI.02003-16. Print 2017 Jan 1.

35.

Oxygen delivery using neonatal self-inflating bags without reservoirs.

Sugiura T, Urushibata R, Komatsu K, Shioda T, Ota T, Sato M, Okubo Y, Fukuoka T, Hosono S, Tamura M.

Pediatr Int. 2017 Feb;59(2):154-158. doi: 10.1111/ped.13184. Epub 2017 Jan 3.

PMID:
27706892
36.

HIV-1 Vpr Abrogates the Effect of TSG101 Overexpression to Support Virus Release.

Chutiwitoonchai N, Siarot L, Takeda E, Shioda T, Ueda M, Aida Y.

PLoS One. 2016 Sep 20;11(9):e0163100. doi: 10.1371/journal.pone.0163100. eCollection 2016.

37.

Proximity-Based Differential Single-Cell Analysis of the Niche to Identify Stem/Progenitor Cell Regulators.

Silberstein L, Goncalves KA, Kharchenko PV, Turcotte R, Kfoury Y, Mercier F, Baryawno N, Severe N, Bachand J, Spencer JA, Papazian A, Lee D, Chitteti BR, Srour EF, Hoggatt J, Tate T, Lo Celso C, Ono N, Nutt S, Heino J, Sipilä K, Shioda T, Osawa M, Lin CP, Hu GF, Scadden DT.

Cell Stem Cell. 2016 Oct 6;19(4):530-543. doi: 10.1016/j.stem.2016.07.004. Epub 2016 Aug 11.

38.

Erasure of DNA methylation, genomic imprints, and epimutations in a primordial germ-cell model derived from mouse pluripotent stem cells.

Miyoshi N, Stel JM, Shioda K, Qu N, Odajima J, Mitsunaga S, Zhang X, Nagano M, Hochedlinger K, Isselbacher KJ, Shioda T.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9545-50. doi: 10.1073/pnas.1610259113. Epub 2016 Aug 2. Erratum in: Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):E5697. Odahima, Junko [corrected to Odajima, Junko].

39.

Social and household factors affecting child health checkup attendance based on a household survey in Japan.

Shioda T, Matsuura M, Fukuda Y, Takahashi K, Yamaoka K.

Ind Health. 2016 Dec 7;54(6):488-497. Epub 2016 Jul 9.

40.

Novel Polymerase Gene Mutations for Human Adaptation in Clinical Isolates of Avian H5N1 Influenza Viruses.

Arai Y, Kawashita N, Daidoji T, Ibrahim MS, El-Gendy EM, Takagi T, Takahashi K, Suzuki Y, Ikuta K, Nakaya T, Shioda T, Watanabe Y.

PLoS Pathog. 2016 Apr 20;12(4):e1005583. doi: 10.1371/journal.ppat.1005583. eCollection 2016 Apr.

41.

Circulation of HIV-1 Multiple Complexity Recombinant Forms Among Female Sex Workers Recently Infected with HIV-1 in Thailand.

Saeng-Aroon S, Loket R, Plipat T, Lumyai S, Chu PY, Sangkitporn S, Nakayama EE, Takeda N, Shioda T, Motomura K.

AIDS Res Hum Retroviruses. 2016 Jul;32(7):694-701. doi: 10.1089/AID.2015.0371. Epub 2016 Apr 19.

PMID:
26892382
42.

A Single-Nucleotide Polymorphism in ABCC4 Is Associated with Tenofovir-Related Beta2-Microglobulinuria in Thai Patients with HIV-1 Infection.

Likanonsakul S, Suntisuklappon B, Nitiyanontakij R, Prasithsirikul W, Nakayama EE, Shioda T, Sangsajja C.

PLoS One. 2016 Jan 25;11(1):e0147724. doi: 10.1371/journal.pone.0147724. eCollection 2016.

43.

Novel mutant human immunodeficiency virus type 1 strains with high degree of resistance to cynomolgus macaque TRIMCyp generated by random mutagenesis.

Sultana T, Nakayama EE, Tobita S, Yokoyama M, Seki Y, Saito A, Nomaguchi M, Adachi A, Akari H, Sato H, Shioda T.

J Gen Virol. 2016 Apr;97(4):963-76. doi: 10.1099/jgv.0.000408. Epub 2016 Jan 20.

44.

Progesterone receptor membrane component 1 promotes survival of human breast cancer cells and the growth of xenograft tumors.

Clark NC, Friel AM, Pru CA, Zhang L, Shioda T, Rueda BR, Peluso JJ, Pru JK.

Cancer Biol Ther. 2016;17(3):262-71. doi: 10.1080/15384047.2016.1139240. Epub 2016 Jan 19.

45.

Nodes-and-connections RNAi knockdown screening: identification of a signaling molecule network involved in fulvestrant action and breast cancer prognosis.

Miyoshi N, Wittner BS, Shioda K, Hitora T, Ito T, Ramaswamy S, Isselbacher KJ, Sgroi DC, Shioda T.

Oncogenesis. 2015 Oct 19;4:e172. doi: 10.1038/oncsis.2015.32.

46.

SETD1A modulates cell cycle progression through a miRNA network that regulates p53 target genes.

Tajima K, Yae T, Javaid S, Tam O, Comaills V, Morris R, Wittner BS, Liu M, Engstrom A, Takahashi F, Black JC, Ramaswamy S, Shioda T, Hammell M, Haber DA, Whetstine JR, Maheswaran S.

Nat Commun. 2015 Sep 23;6:8257. doi: 10.1038/ncomms9257.

47.

RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance.

Miyamoto DT, Zheng Y, Wittner BS, Lee RJ, Zhu H, Broderick KT, Desai R, Fox DB, Brannigan BW, Trautwein J, Arora KS, Desai N, Dahl DM, Sequist LV, Smith MR, Kapur R, Wu CL, Shioda T, Ramaswamy S, Ting DT, Toner M, Maheswaran S, Haber DA.

Science. 2015 Sep 18;349(6254):1351-6. doi: 10.1126/science.aab0917.

48.

Impact of TRIM5α in vivo.

Nakayama EE, Shioda T.

AIDS. 2015 Sep 10;29(14):1733-43. doi: 10.1097/QAD.0000000000000812. Review.

49.

Properties of human immunodeficiency virus type 1 reverse transcriptase recombination upon infection.

Sakuragi S, Shioda T, Sakuragi J.

J Gen Virol. 2015 Nov;96(11):3382-8.

PMID:
26282329
50.

A microfluidic device for label-free, physical capture of circulating tumor cell clusters.

Sarioglu AF, Aceto N, Kojic N, Donaldson MC, Zeinali M, Hamza B, Engstrom A, Zhu H, Sundaresan TK, Miyamoto DT, Luo X, Bardia A, Wittner BS, Ramaswamy S, Shioda T, Ting DT, Stott SL, Kapur R, Maheswaran S, Haber DA, Toner M.

Nat Methods. 2015 Jul;12(7):685-91. doi: 10.1038/nmeth.3404. Epub 2015 May 18.

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