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Items: 1 to 50 of 91

1.

Network changes associated with transdiagnostic depressive symptom improvement following cognitive behavioral therapy in MDD and PTSD.

Yang Z, Gu S, Honnorat N, Linn KA, Shinohara RT, Aselcioglu I, Bruce S, Oathes DJ, Davatzikos C, Satterthwaite TD, Bassett DS, Sheline YI.

Mol Psychiatry. 2018 Aug 13. doi: 10.1038/s41380-018-0201-7. [Epub ahead of print]

PMID:
30104727
2.

Linked dimensions of psychopathology and connectivity in functional brain networks.

Xia CH, Ma Z, Ciric R, Gu S, Betzel RF, Kaczkurkin AN, Calkins ME, Cook PA, García de la Garza A, Vandekar SN, Cui Z, Moore TM, Roalf DR, Ruparel K, Wolf DH, Davatzikos C, Gur RC, Gur RE, Shinohara RT, Bassett DS, Satterthwaite TD.

Nat Commun. 2018 Aug 1;9(1):3003. doi: 10.1038/s41467-018-05317-y.

3.

Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data.

Yu M, Linn KA, Cook PA, Phillips ML, McInnis M, Fava M, Trivedi MH, Weissman MM, Shinohara RT, Sheline YI.

Hum Brain Mapp. 2018 Jul 1. doi: 10.1002/hbm.24241. [Epub ahead of print]

PMID:
29962049
4.

Retinal Parameters as Compared with Head Circumference, Height, Weight, and Body Mass Index in Children in Kenya and Bhutan.

Grundy SJ, Tshering L, Wanjala SW, Diamond MB, Audi MS, Prasad S, Shinohara RT, Rogo D, Wangmo D, Wangdi U, Aarayang A, Tshering T, Burke TF, Mateen FJ.

Am J Trop Med Hyg. 2018 Aug;99(2):482-488. doi: 10.4269/ajtmh.17-0943. Epub 2018 Jun 7.

PMID:
29893200
5.

On testing for spatial correspondence between maps of human brain structure and function.

Alexander-Bloch AF, Shou H, Liu S, Satterthwaite TD, Glahn DC, Shinohara RT, Vandekar SN, Raznahan A.

Neuroimage. 2018 Sep;178:540-551. doi: 10.1016/j.neuroimage.2018.05.070. Epub 2018 Jun 1.

PMID:
29860082
6.

Normative brain size variation and brain shape diversity in humans.

Reardon PK, Seidlitz J, Vandekar S, Liu S, Patel R, Park MTM, Alexander-Bloch A, Clasen LS, Blumenthal JD, Lalonde FM, Giedd JN, Gur RC, Gur RE, Lerch JP, Chakravarty MM, Satterthwaite TD, Shinohara RT, Raznahan A.

Science. 2018 Jun 15;360(6394):1222-1227. doi: 10.1126/science.aar2578. Epub 2018 May 31.

PMID:
29853553
7.

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.

Oguz I, Carass A, Pham DL, Roy S, Subbana N, Calabresi PA, Yushkevich PA, Shinohara RT, Prince JL.

Brainlesion (2017). 2018;10670:3-14. doi: 10.1007/978-3-319-75238-9_1. Epub 2018 Feb 17.

PMID:
29714358
8.

Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation.

Fleishman GM, Valcarcel A, Pham DL, Roy S, Calabresi PA, Yushkevich P, Shinohara RT, Oguz I.

Brainlesion (2017). 2018;10670:43-54. Epub 2018 Feb 17.

PMID:
29714357
9.

Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion.

Dong M, Oguz I, Subbana N, Calabresi P, Shinohara RT, Yushkevich P.

Patch Based Tech Med Imaging (2017). 2017 Sep;10530:138-145. doi: 10.1007/978-3-319-67434-6_16. Epub 2017 Aug 31.

10.

Gestational Age is Dimensionally Associated with Structural Brain Network Abnormalities Across Development.

Nassar R, Kaczkurkin AN, Xia CH, Sotiras A, Pehlivanova M, Moore TM, Garcia de La Garza A, Roalf DR, Rosen AFG, Lorch SA, Ruparel K, Shinohara RT, Davatzikos C, Gur RC, Gur RE, Satterthwaite TD.

Cereb Cortex. 2018 Apr 21. doi: 10.1093/cercor/bhy091. [Epub ahead of print]

PMID:
29688290
11.

Automated Multi-Atlas Segmentation of Hippocampal and Extrahippocampal Subregions in Alzheimer's Disease at 3T and 7T: What Atlas Composition Works Best?

Xie L, Shinohara RT, Ittyerah R, Kuijf HJ, Pluta JB, Blom K, Kooistra M, Reijmer YD, Koek HL, Zwanenburg JJM, Wang H, Luijten PR, Geerlings MI, Das SR, Biessels GJ, Wolk DA, Yushkevich PA, Wisse LEM.

J Alzheimers Dis. 2018;63(1):217-225. doi: 10.3233/JAD-170932.

PMID:
29614654
12.

MIMoSA: An Automated Method for Intermodal Segmentation Analysis of Multiple Sclerosis Brain Lesions.

Valcarcel AM, Linn KA, Vandekar SN, Satterthwaite TD, Muschelli J, Calabresi PA, Pham DL, Martin ML, Shinohara RT.

J Neuroimaging. 2018 Jul;28(4):389-398. doi: 10.1111/jon.12506. Epub 2018 Mar 8.

PMID:
29516669
13.

An Automated Statistical Technique for Counting Distinct Multiple Sclerosis Lesions.

Dworkin JD, Linn KA, Oguz I, Fleishman GM, Bakshi R, Nair G, Calabresi PA, Henry RG, Oh J, Papinutto N, Pelletier D, Rooney W, Stern W, Sicotte NL, Reich DS, Shinohara RT; North American Imaging in Multiple Sclerosis Cooperative.

AJNR Am J Neuroradiol. 2018 Apr;39(4):626-633. doi: 10.3174/ajnr.A5556. Epub 2018 Feb 22.

PMID:
29472300
14.

Diminished Cortical Thickness is Associated with Impulsive Choice in Adolescence.

Pehlivanova M, Wolf DH, Sotiras A, Kaczkurkin A, Moore TM, Ciric R, Cook PA, de La Garza AG, Rosen A, Ruparel K, Sharma A, Shinohara RT, Roalf DR, Gur RC, Davatzikos C, Gur RE, Kable JW, Satterthwaite TD.

J Neurosci. 2018 Feb 12. pii: 2200-17. doi: 10.1523/JNEUROSCI.2200-17.2018. [Epub ahead of print]

PMID:
29440536
15.

Vitamin D levels do not predict the stage of hepatic fibrosis in patients with non-alcoholic fatty liver disease: A PRISMA compliant systematic review and meta-analysis of pooled data.

Saberi B, Dadabhai AS, Nanavati J, Wang L, Shinohara RT, Mullin GE.

World J Hepatol. 2018 Jan 27;10(1):142-154. doi: 10.4254/wjh.v10.i1.142.

16.

Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.

Davatzikos C, Rathore S, Bakas S, Pati S, Bergman M, Kalarot R, Sridharan P, Gastounioti A, Jahani N, Cohen E, Akbari H, Tunc B, Doshi J, Parker D, Hsieh M, Sotiras A, Li H, Ou Y, Doot RK, Bilello M, Fan Y, Shinohara RT, Yushkevich P, Verma R, Kontos D.

J Med Imaging (Bellingham). 2018 Jan;5(1):011018. doi: 10.1117/1.JMI.5.1.011018. Epub 2018 Jan 11.

PMID:
29340286
17.

Quantitative assessment of structural image quality.

Rosen AFG, Roalf DR, Ruparel K, Blake J, Seelaus K, Villa LP, Ciric R, Cook PA, Davatzikos C, Elliott MA, Garcia de La Garza A, Gennatas ED, Quarmley M, Schmitt JE, Shinohara RT, Tisdall MD, Craddock RC, Gur RE, Gur RC, Satterthwaite TD.

Neuroimage. 2018 Apr 1;169:407-418. doi: 10.1016/j.neuroimage.2017.12.059. Epub 2017 Dec 24.

PMID:
29278774
18.

Yield of Brain MRI in Clinically Diagnosed Epilepsy in the Kingdom of Bhutan: A Prospective Study.

Bruno V, Klein JP, Nidup D, Nirola DK, Tshering L, Deki S, Clark SJ, Linn KA, Shinohara RT, Dorji C, Pokhrel DR, Dema U, Mateen FJ; Bhutan Epilepsy Project.

Ann Glob Health. 2017 May - Aug;83(3-4):415-422. doi: 10.1016/j.aogh.2017.02.001. Epub 2017 Apr 7.

19.

Mapping the structural and functional network architecture of the medial temporal lobe using 7T MRI.

Shah P, Bassett DS, Wisse LEM, Detre JA, Stein JM, Yushkevich PA, Shinohara RT, Pluta JB, Valenciano E, Daffner M, Wolk DA, Elliott MA, Litt B, Davis KA, Das SR.

Hum Brain Mapp. 2018 Feb;39(2):851-865. doi: 10.1002/hbm.23887. Epub 2017 Nov 20.

PMID:
29159960
20.

Harmonization of cortical thickness measurements across scanners and sites.

Fortin JP, Cullen N, Sheline YI, Taylor WD, Aselcioglu I, Cook PA, Adams P, Cooper C, Fava M, McGrath PJ, McInnis M, Phillips ML, Trivedi MH, Weissman MM, Shinohara RT.

Neuroimage. 2018 Feb 15;167:104-120. doi: 10.1016/j.neuroimage.2017.11.024. Epub 2017 Nov 17.

PMID:
29155184
21.

The NAIMS cooperative pilot project: Design, implementation and future directions.

Oh J, Bakshi R, Calabresi PA, Crainiceanu C, Henry RG, Nair G, Papinutto N, Constable RT, Reich DS, Pelletier D, Rooney W, Schwartz D, Tagge I, Shinohara RT, Simon JH, Sicotte NL; NAIMS Cooperative Steering Committee.

Mult Scler. 2017 Oct 1:1352458517739990. doi: 10.1177/1352458517739990. [Epub ahead of print]

PMID:
29106329
22.

Sex differences in estimated brain metabolism in relation to body growth through adolescence.

Vandekar SN, Shou H, Satterthwaite TD, Shinohara RT, Merikangas AK, Roalf DR, Ruparel K, Rosen A, Gennatas ED, Elliott MA, Davatzikos C, Gur RC, Gur RE, Detre JA.

J Cereb Blood Flow Metab. 2017 Jan 1:271678X17737692. doi: 10.1177/0271678X17737692. [Epub ahead of print]

PMID:
29072856
23.

Faster family-wise error control for neuroimaging with a parametric bootstrap.

Vandekar SN, Satterthwaite TD, Rosen A, Ciric R, Roalf DR, Ruparel K, Gur RC, Gur RE, Shinohara RT.

Biostatistics. 2017 Oct 20. doi: 10.1093/biostatistics/kxx051. [Epub ahead of print]

PMID:
29059370
24.

Radiomic subtyping improves disease stratification beyond key molecular, clinical, and standard imaging characteristics in patients with glioblastoma.

Kickingereder P, Neuberger U, Bonekamp D, Piechotta PL, Götz M, Wick A, Sill M, Kratz A, Shinohara RT, Jones DTW, Radbruch A, Muschelli J, Unterberg A, Debus J, Schlemmer HP, Herold-Mende C, Pfister S, von Deimling A, Wick W, Capper D, Maier-Hein KH, Bendszus M.

Neuro Oncol. 2018 May 18;20(6):848-857. doi: 10.1093/neuonc/nox188.

PMID:
29036412
25.

Fully Bayesian spectral methods for imaging data.

Reich BJ, Guinness J, Vandekar SN, Shinohara RT, Staicu AM.

Biometrics. 2018 Jun;74(2):645-652. doi: 10.1111/biom.12782. Epub 2017 Sep 28.

26.

Increasing propensity to pursue operative closure of atrial septal defects following changes in the instructions for use of the Amplatzer Septal Occluder device: An observational study using data from the Pediatric Health Information Systems database.

O'Byrne ML, Shinohara RT, Grant EK, Kanter JP, Gillespie MJ, Dori Y, Rome JJ, Glatz AC.

Am Heart J. 2017 Oct;192:85-97. doi: 10.1016/j.ahj.2017.07.012. Epub 2017 Jul 19.

PMID:
28938967
27.

Common and dissociable regional cerebral blood flow differences associate with dimensions of psychopathology across categorical diagnoses.

Kaczkurkin AN, Moore TM, Calkins ME, Ciric R, Detre JA, Elliott MA, Foa EB, Garcia de la Garza A, Roalf DR, Rosen A, Ruparel K, Shinohara RT, Xia CH, Wolf DH, Gur RE, Gur RC, Satterthwaite TD.

Mol Psychiatry. 2017 Sep 19. doi: 10.1038/mp.2017.174. [Epub ahead of print]

28.

White matter microstructural deficits in 22q11.2 deletion syndrome.

Roalf DR, Eric Schmitt J, Vandekar SN, Satterthwaite TD, Shinohara RT, Ruparel K, Elliott MA, Prabhakaran K, McDonald-McGinn DM, Zackai EH, Gur RC, Emanuel BS, Gur RE.

Psychiatry Res Neuroimaging. 2017 Oct 30;268:35-44. doi: 10.1016/j.pscychresns.2017.08.001. Epub 2017 Aug 24.

PMID:
28865345
29.

Harmonization of multi-site diffusion tensor imaging data.

Fortin JP, Parker D, Tunç B, Watanabe T, Elliott MA, Ruparel K, Roalf DR, Satterthwaite TD, Gur RC, Gur RE, Schultz RT, Verma R, Shinohara RT.

Neuroimage. 2017 Nov 1;161:149-170. doi: 10.1016/j.neuroimage.2017.08.047. Epub 2017 Aug 18.

PMID:
28826946
30.

Alternating event processes during lifetimes: population dynamics and statistical inference.

Shinohara RT, Sun Y, Wang MC.

Lifetime Data Anal. 2018 Jan;24(1):110-125. doi: 10.1007/s10985-017-9404-5. Epub 2017 Aug 7.

PMID:
28785915
31.

Volumetric Analysis from a Harmonized Multisite Brain MRI Study of a Single Subject with Multiple Sclerosis.

Shinohara RT, Oh J, Nair G, Calabresi PA, Davatzikos C, Doshi J, Henry RG, Kim G, Linn KA, Papinutto N, Pelletier D, Pham DL, Reich DS, Rooney W, Roy S, Stern W, Tummala S, Yousuf F, Zhu A, Sicotte NL, Bakshi R; NAIMS Cooperative.

AJNR Am J Neuroradiol. 2017 Aug;38(8):1501-1509. doi: 10.3174/ajnr.A5254. Epub 2017 Jun 22.

32.

Tracheobronchomalacia Is Associated with Increased Morbidity in Bronchopulmonary Dysplasia.

Hysinger EB, Friedman NL, Padula MA, Shinohara RT, Zhang H, Panitch HB, Kawut SM; Children's Hospitals Neonatal Consortium.

Ann Am Thorac Soc. 2017 Jun 16. doi: 10.1513/AnnalsATS.201702-178OC. [Epub ahead of print]

PMID:
28622012
33.

Gradient nonlinearity effects on upper cervical spinal cord area measurement from 3D T1 -weighted brain MRI acquisitions.

Papinutto N, Bakshi R, Bischof A, Calabresi PA, Caverzasi E, Constable RT, Datta E, Kirkish G, Nair G, Oh J, Pelletier D, Pham DL, Reich DS, Rooney W, Roy S, Schwartz D, Shinohara RT, Sicotte NL, Stern WA, Tagge I, Tauhid S, Tummala S, Henry RG; North American Imaging in Multiple Sclerosis Cooperative(NAIMS).

Magn Reson Med. 2018 Mar;79(3):1595-1601. doi: 10.1002/mrm.26776. Epub 2017 Jun 15.

PMID:
28617996
34.

Modular Segregation of Structural Brain Networks Supports the Development of Executive Function in Youth.

Baum GL, Ciric R, Roalf DR, Betzel RF, Moore TM, Shinohara RT, Kahn AE, Vandekar SN, Rupert PE, Quarmley M, Cook PA, Elliott MA, Ruparel K, Gur RE, Gur RC, Bassett DS, Satterthwaite TD.

Curr Biol. 2017 Jun 5;27(11):1561-1572.e8. doi: 10.1016/j.cub.2017.04.051. Epub 2017 May 25.

35.

Benchmarking of participant-level confound regression strategies for the control of motion artifact in studies of functional connectivity.

Ciric R, Wolf DH, Power JD, Roalf DR, Baum GL, Ruparel K, Shinohara RT, Elliott MA, Eickhoff SB, Davatzikos C, Gur RC, Gur RE, Bassett DS, Satterthwaite TD.

Neuroimage. 2017 Jul 1;154:174-187. doi: 10.1016/j.neuroimage.2017.03.020. Epub 2017 Mar 14.

36.

Cognitive behavioral therapy increases amygdala connectivity with the cognitive control network in both MDD and PTSD.

Shou H, Yang Z, Satterthwaite TD, Cook PA, Bruce SE, Shinohara RT, Rosenberg B, Sheline YI.

Neuroimage Clin. 2017 Jan 27;14:464-470. doi: 10.1016/j.nicl.2017.01.030. eCollection 2017.

37.

Influence of vitamin D on liver fibrosis in chronic hepatitis C: A systematic review and meta-analysis of the pooled clinical trials data.

Dadabhai AS, Saberi B, Lobner K, Shinohara RT, Mullin GE.

World J Hepatol. 2017 Feb 18;9(5):278-287. doi: 10.4254/wjh.v9.i5.278.

38.

Common Dimensional Reward Deficits Across Mood and Psychotic Disorders: A Connectome-Wide Association Study.

Sharma A, Wolf DH, Ciric R, Kable JW, Moore TM, Vandekar SN, Katchmar N, Daldal A, Ruparel K, Davatzikos C, Elliott MA, Calkins ME, Shinohara RT, Bassett DS, Satterthwaite TD.

Am J Psychiatry. 2017 Jul 1;174(7):657-666. doi: 10.1176/appi.ajp.2016.16070774. Epub 2017 Jan 31.

39.

The central vein sign and its clinical evaluation for the diagnosis of multiple sclerosis: a consensus statement from the North American Imaging in Multiple Sclerosis Cooperative.

Sati P, Oh J, Constable RT, Evangelou N, Guttmann CR, Henry RG, Klawiter EC, Mainero C, Massacesi L, McFarland H, Nelson F, Ontaneda D, Rauscher A, Rooney WD, Samaraweera AP, Shinohara RT, Sobel RA, Solomon AJ, Treaba CA, Wuerfel J, Zivadinov R, Sicotte NL, Pelletier D, Reich DS; NAIMS Cooperative.

Nat Rev Neurol. 2016 Dec;12(12):714-722. doi: 10.1038/nrneurol.2016.166. Epub 2016 Nov 11. Review.

PMID:
27834394
40.

Large-scale Radiomic Profiling of Recurrent Glioblastoma Identifies an Imaging Predictor for Stratifying Anti-Angiogenic Treatment Response.

Kickingereder P, Götz M, Muschelli J, Wick A, Neuberger U, Shinohara RT, Sill M, Nowosielski M, Schlemmer HP, Radbruch A, Wick W, Bendszus M, Maier-Hein KH, Bonekamp D.

Clin Cancer Res. 2016 Dec 1;22(23):5765-5771. Epub 2016 Oct 10.

41.

Elevated Amygdala Perfusion Mediates Developmental Sex Differences in Trait Anxiety.

Kaczkurkin AN, Moore TM, Ruparel K, Ciric R, Calkins ME, Shinohara RT, Elliott MA, Hopson R, Roalf DR, Vandekar SN, Gennatas ED, Wolf DH, Scott JC, Pine DS, Leibenluft E, Detre JA, Foa EB, Gur RE, Gur RC, Satterthwaite TD.

Biol Psychiatry. 2016 Nov 15;80(10):775-785. doi: 10.1016/j.biopsych.2016.04.021. Epub 2016 May 9.

42.

Statistical estimation of white matter microstructure from conventional MRI.

Suttner LH, Mejia A, Dewey B, Sati P, Reich DS, Shinohara RT.

Neuroimage Clin. 2016 Sep 14;12:615-623. eCollection 2016.

43.

Structural Correlation-based Outlier Rejection (SCORE) algorithm for arterial spin labeling time series.

Dolui S, Wang Z, Shinohara RT, Wolk DA, Detre JA; Alzheimer's Disease Neuroimaging Initiative.

J Magn Reson Imaging. 2017 Jun;45(6):1786-1797. doi: 10.1002/jmri.25436. Epub 2016 Aug 29.

44.

PREVAIL: Predicting Recovery through Estimation and Visualization of Active and Incident Lesions.

Dworkin JD, Sweeney EM, Schindler MK, Chahin S, Reich DS, Shinohara RT.

Neuroimage Clin. 2016 Aug 2;12:293-9. doi: 10.1016/j.nicl.2016.07.015. eCollection 2016.

45.

Abnormality Detection via Iterative Deformable Registration and Basis-Pursuit Decomposition.

Zeng K, Erus G, Sotiras A, Shinohara RT, Davatzikos C.

IEEE Trans Med Imaging. 2016 Aug;35(8):1937-51. doi: 10.1109/TMI.2016.2538998. Epub 2016 Mar 7.

46.

Power estimation for non-standardized multisite studies.

Keshavan A, Paul F, Beyer MK, Zhu AH, Papinutto N, Shinohara RT, Stern W, Amann M, Bakshi R, Bischof A, Carriero A, Comabella M, Crane JC, D'Alfonso S, Demaerel P, Dubois B, Filippi M, Fleischer V, Fontaine B, Gaetano L, Goris A, Graetz C, Gröger A, Groppa S, Hafler DA, Harbo HF, Hemmer B, Jordan K, Kappos L, Kirkish G, Llufriu S, Magon S, Martinelli-Boneschi F, McCauley JL, Montalban X, Mühlau M, Pelletier D, Pattany PM, Pericak-Vance M, Cournu-Rebeix I, Rocca MA, Rovira A, Schlaeger R, Saiz A, Sprenger T, Stecco A, Uitdehaag BMJ, Villoslada P, Wattjes MP, Weiner H, Wuerfel J, Zimmer C, Zipp F; International Multiple Sclerosis Genetics Consortium. Electronic address: AIVINSON@PARTNERS.ORG, Hauser SL, Oksenberg JR, Henry RG.

Neuroimage. 2016 Jul 1;134:281-294. doi: 10.1016/j.neuroimage.2016.03.051. Epub 2016 Apr 1.

47.

Structural Brain Abnormalities in Youth With Psychosis Spectrum Symptoms.

Satterthwaite TD, Wolf DH, Calkins ME, Vandekar SN, Erus G, Ruparel K, Roalf DR, Linn KA, Elliott MA, Moore TM, Hakonarson H, Shinohara RT, Davatzikos C, Gur RC, Gur RE.

JAMA Psychiatry. 2016 May 1;73(5):515-24. doi: 10.1001/jamapsychiatry.2015.3463.

48.

Subject-level measurement of local cortical coupling.

Vandekar SN, Shinohara RT, Raznahan A, Hopson RD, Roalf DR, Ruparel K, Gur RC, Gur RE, Satterthwaite TD.

Neuroimage. 2016 Jun;133:88-97. doi: 10.1016/j.neuroimage.2016.03.002. Epub 2016 Mar 5.

49.

Removing inter-subject technical variability in magnetic resonance imaging studies.

Fortin JP, Sweeney EM, Muschelli J, Crainiceanu CM, Shinohara RT; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2016 May 15;132:198-212. doi: 10.1016/j.neuroimage.2016.02.036. Epub 2016 Feb 23.

50.

Control-group feature normalization for multivariate pattern analysis of structural MRI data using the support vector machine.

Linn KA, Gaonkar B, Satterthwaite TD, Doshi J, Davatzikos C, Shinohara RT.

Neuroimage. 2016 May 15;132:157-166. doi: 10.1016/j.neuroimage.2016.02.044. Epub 2016 Feb 23.

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