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Items: 1 to 50 of 125

1.

Longitudinal development of brain iron is linked to cognition in youth.

Larsen B, Bourque J, Moore TM, Adebimpe A, Calkins ME, Elliott MA, Gur RC, Gur RE, Moberg PJ, Roalf DR, Ruparel K, Turetsky BI, Vandekar SN, Wolf DH, Shinohara RT, Satterthwaite TD.

J Neurosci. 2020 Jan 27. pii: 2434-19. doi: 10.1523/JNEUROSCI.2434-19.2020. [Epub ahead of print]

PMID:
31988059
2.

Nonnegative decomposition of functional count data.

Backenroth D, Shinohara RT, Schrack JA, Goldsmith J.

Biometrics. 2020 Jan 23. doi: 10.1111/biom.13220. [Epub ahead of print]

PMID:
31970756
3.

A local group differences test for subject-level multivariate density neuroimaging outcomes.

Dworkin JD, Linn KA, Solomon AJ, Satterthwaite TD, Raznahan A, Bakshi R, Shinohara RT.

Biostatistics. 2019 Dec 26. pii: kxz058. doi: 10.1093/biostatistics/kxz058. [Epub ahead of print]

PMID:
31875881
4.

Development of structure-function coupling in human brain networks during youth.

Baum GL, Cui Z, Roalf DR, Ciric R, Betzel RF, Larsen B, Cieslak M, Cook PA, Xia CH, Moore TM, Ruparel K, Oathes DJ, Alexander-Bloch AF, Shinohara RT, Raznahan A, Gur RE, Gur RC, Bassett DS, Satterthwaite TD.

Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):771-778. doi: 10.1073/pnas.1912034117. Epub 2019 Dec 24.

5.

Spatial distribution of interictal spikes fluctuates over time and localizes seizure onset.

Conrad EC, Tomlinson SB, Wong JN, Oechsel KF, Shinohara RT, Litt B, Davis KA, Marsh ED.

Brain. 2020 Feb 1;143(2):554-569. doi: 10.1093/brain/awz386.

PMID:
31860064
6.

Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan.

Pomponio R, Erus G, Habes M, Doshi J, Srinivasan D, Mamourian E, Bashyam V, Nasrallah IM, Satterthwaite TD, Fan Y, Launer LJ, Masters CL, Maruff P, Zhuo C, Völzke H, Johnson SC, Fripp J, Koutsouleris N, Wolf DH, Gur R, Gur R, Morris J, Albert MS, Grabe HJ, Resnick SM, Bryan RN, Wolk DA, Shinohara RT, Shou H, Davatzikos C.

Neuroimage. 2020 Mar;208:116450. doi: 10.1016/j.neuroimage.2019.116450. Epub 2019 Dec 9.

7.

Urinalysis in patients with neuromyelitis optica spectrum disorder.

Chen ZG, Huang J, Fan R, Weng RH, Shinohara RT, Landis JR, Chen Y, Jiang Y.

Eur J Neurol. 2019 Nov 15. doi: 10.1111/ene.14128. [Epub ahead of print]

PMID:
31729806
8.

Neurostructural Heterogeneity in Youths With Internalizing Symptoms.

Kaczkurkin AN, Sotiras A, Baller EB, Barzilay R, Calkins ME, Chand GB, Cui Z, Erus G, Fan Y, Gur RE, Gur RC, Moore TM, Roalf DR, Rosen AFG, Ruparel K, Shinohara RT, Varol E, Wolf DH, Davatzikos C, Satterthwaite TD.

Biol Psychiatry. 2020 Mar 1;87(5):473-482. doi: 10.1016/j.biopsych.2019.09.005. Epub 2019 Sep 18.

PMID:
31690494
9.

Virtual resection predicts surgical outcome for drug-resistant epilepsy.

Kini LG, Bernabei JM, Mikhail F, Hadar P, Shah P, Khambhati AN, Oechsel K, Archer R, Boccanfuso J, Conrad E, Shinohara RT, Stein JM, Das S, Kheder A, Lucas TH, Davis KA, Bassett DS, Litt B.

Brain. 2019 Dec 1;142(12):3892-3905. doi: 10.1093/brain/awz303.

PMID:
31599323
10.

Single-Voxel 1 H MR spectroscopy of cerebral nicotinamide adenine dinucleotide (NAD+ ) in humans at 7T using a 32-channel volume coil.

Bagga P, Hariharan H, Wilson NE, Beer JC, Shinohara RT, Elliott MA, Baur JA, Marincola FM, Witschey WR, Haris M, Detre JA, Reddy R.

Magn Reson Med. 2020 Mar;83(3):806-814. doi: 10.1002/mrm.27971. Epub 2019 Sep 10.

PMID:
31502710
11.

Accelerated cortical thinning within structural brain networks is associated with irritability in youth.

Jirsaraie RJ, Kaczkurkin AN, Rush S, Piiwia K, Adebimpe A, Bassett DS, Bourque J, Calkins ME, Cieslak M, Ciric R, Cook PA, Davila D, Elliott MA, Leibenluft E, Murtha K, Roalf DR, Rosen AFG, Ruparel K, Shinohara RT, Sotiras A, Wolf DH, Davatzikos C, Satterthwaite TD.

Neuropsychopharmacology. 2019 Dec;44(13):2254-2262. doi: 10.1038/s41386-019-0508-3. Epub 2019 Sep 2.

PMID:
31476764
12.

Sex-biased trajectories of amygdalo-hippocampal morphology change over human development.

Fish AM, Nadig A, Seidlitz J, Reardon PK, Mankiw C, McDermott CL, Blumenthal JD, Clasen LS, Lalonde F, Lerch JP, Chakravarty MM, Shinohara RT, Raznahan A.

Neuroimage. 2020 Jan 1;204:116122. doi: 10.1016/j.neuroimage.2019.116122. Epub 2019 Aug 27.

13.

Distance-based analysis of variance for brain connectivity.

Shinohara RT, Shou H, Carone M, Schultz R, Tunc B, Parker D, Martin ML, Verma R.

Biometrics. 2019 Jul 27. doi: 10.1111/biom.13123. [Epub ahead of print]

PMID:
31350904
14.

Neuroimaging Findings in US Government Personnel With Possible Exposure to Directional Phenomena in Havana, Cuba.

Verma R, Swanson RL, Parker D, Ould Ismail AA, Shinohara RT, Alappatt JA, Doshi J, Davatzikos C, Gallaway M, Duda D, Chen HI, Kim JJ, Gur RC, Wolf RL, Grady MS, Hampton S, Diaz-Arrastia R, Smith DH.

JAMA. 2019 Jul 23;322(4):336-347. doi: 10.1001/jama.2019.9269.

15.

Robust spatial extent inference with a semiparametric bootstrap joint inference procedure.

Vandekar SN, Satterthwaite TD, Xia CH, Adebimpe A, Ruparel K, Gur RC, Gur RE, Shinohara RT.

Biometrics. 2019 Dec;75(4):1145-1155. doi: 10.1111/biom.13114. Epub 2019 Aug 28.

PMID:
31282994
16.

Evidence for Dissociable Linkage of Dimensions of Psychopathology to Brain Structure in Youths.

Kaczkurkin AN, Park SS, Sotiras A, Moore TM, Calkins ME, Cieslak M, Rosen AFG, Ciric R, Xia CH, Cui Z, Sharma A, Wolf DH, Ruparel K, Pine DS, Shinohara RT, Roalf DR, Gur RC, Davatzikos C, Gur RE, Satterthwaite TD.

Am J Psychiatry. 2019 Dec 1;176(12):1000-1009. doi: 10.1176/appi.ajp.2019.18070835. Epub 2019 Jun 24.

PMID:
31230463
17.

A Spatio-Temporal Model for Longitudinal Image-on-Image Regression.

Hazra A, Reich BJ, Reich DS, Shinohara RT, Staicu AM.

Stat Biosci. 2019 Apr;11(1):22-46. Epub 2017 Oct 23.

PMID:
31156722
18.

Burden of Environmental Adversity Associated With Psychopathology, Maturation, and Brain Behavior Parameters in Youths.

Gur RE, Moore TM, Rosen AFG, Barzilay R, Roalf DR, Calkins ME, Ruparel K, Scott JC, Almasy L, Satterthwaite TD, Shinohara RT, Gur RC.

JAMA Psychiatry. 2019 May 29. doi: 10.1001/jamapsychiatry.2019.0943. [Epub ahead of print]

PMID:
31141099
19.

Characterizing the role of the structural connectome in seizure dynamics.

Shah P, Ashourvan A, Mikhail F, Pines A, Kini L, Oechsel K, Das SR, Stein JM, Shinohara RT, Bassett DS, Litt B, Davis KA.

Brain. 2019 Jul 1;142(7):1955-1972. doi: 10.1093/brain/awz125.

PMID:
31099821
20.

The emergent integrated network structure of scientific research.

Dworkin JD, Shinohara RT, Bassett DS.

PLoS One. 2019 Apr 30;14(4):e0216146. doi: 10.1371/journal.pone.0216146. eCollection 2019.

21.

Interhospital Variation in the Costs of Pediatric/Congenital Cardiac Catheterization Laboratory Procedures: Analysis of Data From the Pediatric Health Information Systems Database.

O'Byrne ML, Glatz AC, Faerber JA, Seshadri R, Millenson ME, Mi L, Shinohara RT, Dori Y, Gillespie MJ, Rome JJ, Kawut SM, Groeneveld PW.

J Am Heart Assoc. 2019 May 7;8(9):e011543. doi: 10.1161/JAHA.118.011543.

22.

Childhood trauma history is linked to abnormal brain connectivity in major depression.

Yu M, Linn KA, Shinohara RT, Oathes DJ, Cook PA, Duprat R, Moore TM, Oquendo MA, Phillips ML, McInnis M, Fava M, Trivedi MH, McGrath P, Parsey R, Weissman MM, Sheline YI.

Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8582-8590. doi: 10.1073/pnas.1900801116. Epub 2019 Apr 8. Erratum in: Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):13146.

23.

Glutamate weighted imaging contrast in gliomas with 7 Tesla magnetic resonance imaging.

Neal A, Moffat BA, Stein JM, Nanga RPR, Desmond P, Shinohara RT, Hariharan H, Glarin R, Drummond K, Morokoff A, Kwan P, Reddy R, O'Brien TJ, Davis KA.

Neuroimage Clin. 2019;22:101694. doi: 10.1016/j.nicl.2019.101694. Epub 2019 Jan 29.

24.

Imaging outcome measures of neuroprotection and repair in MS: A consensus statement from NAIMS.

Oh J, Ontaneda D, Azevedo C, Klawiter EC, Absinta M, Arnold DL, Bakshi R, Calabresi PA, Crainiceanu C, Dewey B, Freeman L, Gauthier S, Henry R, Inglese M, Kolind S, Li DKB, Mainero C, Menon RS, Nair G, Narayanan S, Nelson F, Pelletier D, Rauscher A, Rooney W, Sati P, Schwartz D, Shinohara RT, Tagge I, Traboulsee A, Wang Y, Yoo Y, Yousry T, Zhang Y, Sicotte NL, Reich DS; North American Imaging in Multiple Sclerosis Cooperative.

Neurology. 2019 Mar 12;92(11):519-533. doi: 10.1212/WNL.0000000000007099. Epub 2019 Feb 20. Review. Erratum in: Neurology. 2019 Jul 2;93(1):46.

PMID:
30787160
25.

Alterations in white matter microstructure in individuals at persistent risk for psychosis.

Roalf DR, de la Garza AG, Rosen A, Calkins ME, Moore TM, Quarmley M, Ruparel K, Xia CH, Rupert PE, Satterthwaite TD, Shinohara RT, Elliott MA, Gur RC, Gur RE.

Mol Psychiatry. 2019 Feb 5. doi: 10.1038/s41380-019-0360-1. [Epub ahead of print]

26.

A surface-in gradient of thalamic damage evolves in pediatric multiple sclerosis.

Fadda G, Brown RA, Magliozzi R, Aubert-Broche B, O'Mahony J, Shinohara RT, Banwell B, Marrie RA, Yeh EA, Collins DL, Arnold DL, Bar-Or A; Canadian Pediatric Demyelinating Disease Network.

Ann Neurol. 2019 Mar;85(3):340-351. doi: 10.1002/ana.25429. Epub 2019 Feb 20.

27.

Structural and functional asymmetry of medial temporal subregions in unilateral temporal lobe epilepsy: A 7T MRI study.

Shah P, Bassett DS, Wisse LEM, Detre JA, Stein JM, Yushkevich PA, Shinohara RT, Elliott MA, Das SR, Davis KA.

Hum Brain Mapp. 2019 Jun 1;40(8):2390-2398. doi: 10.1002/hbm.24530. Epub 2019 Jan 21.

PMID:
30666753
28.

The impact of peppermint oil on the irritable bowel syndrome: a meta-analysis of the pooled clinical data.

Alammar N, Wang L, Saberi B, Nanavati J, Holtmann G, Shinohara RT, Mullin GE.

BMC Complement Altern Med. 2019 Jan 17;19(1):21. doi: 10.1186/s12906-018-2409-0.

29.

A dual modeling approach to automatic segmentation of cerebral T2 hyperintensities and T1 black holes in multiple sclerosis.

Valcarcel AM, Linn KA, Khalid F, Vandekar SN, Tauhid S, Satterthwaite TD, Muschelli J, Martin ML, Bakshi R, Shinohara RT.

Neuroimage Clin. 2018;20:1211-1221. doi: 10.1016/j.nicl.2018.10.013. Epub 2018 Oct 16.

30.

Gradient Boosted Trees for Corrective Learning.

Oguz BU, Shinohara RT, Yushkevich PA, Oguz I.

Mach Learn Med Imaging. 2017 Sep;10541:203-211. doi: 10.1007/978-3-319-67389-9_24. Epub 2017 Sep 7.

31.

Automated Integration of Multimodal MRI for the Probabilistic Detection of the Central Vein Sign in White Matter Lesions.

Dworkin JD, Sati P, Solomon A, Pham DL, Watts R, Martin ML, Ontaneda D, Schindler MK, Reich DS, Shinohara RT.

AJNR Am J Neuroradiol. 2018 Oct;39(10):1806-1813. doi: 10.3174/ajnr.A5765. Epub 2018 Sep 13.

32.

The landscape of NeuroImage-ing research.

Dworkin JD, Shinohara RT, Bassett DS.

Neuroimage. 2018 Dec;183:872-883. doi: 10.1016/j.neuroimage.2018.09.005. Epub 2018 Sep 6.

33.

Network changes associated with transdiagnostic depressive symptom improvement following cognitive behavioral therapy in MDD and PTSD.

Yang Z, Gu S, Honnorat N, Linn KA, Shinohara RT, Aselcioglu I, Bruce S, Oathes DJ, Davatzikos C, Satterthwaite TD, Bassett DS, Sheline YI.

Mol Psychiatry. 2018 Dec;23(12):2314-2323. doi: 10.1038/s41380-018-0201-7. Epub 2018 Aug 13.

PMID:
30104727
34.

Linked dimensions of psychopathology and connectivity in functional brain networks.

Xia CH, Ma Z, Ciric R, Gu S, Betzel RF, Kaczkurkin AN, Calkins ME, Cook PA, García de la Garza A, Vandekar SN, Cui Z, Moore TM, Roalf DR, Ruparel K, Wolf DH, Davatzikos C, Gur RC, Gur RE, Shinohara RT, Bassett DS, Satterthwaite TD.

Nat Commun. 2018 Aug 1;9(1):3003. doi: 10.1038/s41467-018-05317-y.

35.

Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data.

Yu M, Linn KA, Cook PA, Phillips ML, McInnis M, Fava M, Trivedi MH, Weissman MM, Shinohara RT, Sheline YI.

Hum Brain Mapp. 2018 Nov;39(11):4213-4227. doi: 10.1002/hbm.24241. Epub 2018 Jul 1.

36.

Retinal Parameters as Compared with Head Circumference, Height, Weight, and Body Mass Index in Children in Kenya and Bhutan.

Grundy SJ, Tshering L, Wanjala SW, Diamond MB, Audi MS, Prasad S, Shinohara RT, Rogo D, Wangmo D, Wangdi U, Aarayang A, Tshering T, Burke TF, Mateen FJ.

Am J Trop Med Hyg. 2018 Aug;99(2):482-488. doi: 10.4269/ajtmh.17-0943. Epub 2018 Jun 7.

37.

On testing for spatial correspondence between maps of human brain structure and function.

Alexander-Bloch AF, Shou H, Liu S, Satterthwaite TD, Glahn DC, Shinohara RT, Vandekar SN, Raznahan A.

Neuroimage. 2018 Sep;178:540-551. doi: 10.1016/j.neuroimage.2018.05.070. Epub 2018 Jun 1.

38.

Normative brain size variation and brain shape diversity in humans.

Reardon PK, Seidlitz J, Vandekar S, Liu S, Patel R, Park MTM, Alexander-Bloch A, Clasen LS, Blumenthal JD, Lalonde FM, Giedd JN, Gur RC, Gur RE, Lerch JP, Chakravarty MM, Satterthwaite TD, Shinohara RT, Raznahan A.

Science. 2018 Jun 15;360(6394):1222-1227. doi: 10.1126/science.aar2578. Epub 2018 May 31.

PMID:
29853553
39.

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.

Oguz I, Carass A, Pham DL, Roy S, Subbana N, Calabresi PA, Yushkevich PA, Shinohara RT, Prince JL.

Brainlesion. 2018;10670:3-14. doi: 10.1007/978-3-319-75238-9_1. Epub 2018 Feb 17.

40.

Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation.

Fleishman GM, Valcarcel A, Pham DL, Roy S, Calabresi PA, Yushkevich P, Shinohara RT, Oguz I.

Brainlesion. 2018;10670:43-54. Epub 2018 Feb 17.

41.

Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion.

Dong M, Oguz I, Subbana N, Calabresi P, Shinohara RT, Yushkevich P.

Patch Based Tech Med Imaging (2017). 2017 Sep;10530:138-145. doi: 10.1007/978-3-319-67434-6_16. Epub 2017 Aug 31.

42.

Gestational Age is Dimensionally Associated with Structural Brain Network Abnormalities Across Development.

Nassar R, Kaczkurkin AN, Xia CH, Sotiras A, Pehlivanova M, Moore TM, Garcia de La Garza A, Roalf DR, Rosen AFG, Lorch SA, Ruparel K, Shinohara RT, Davatzikos C, Gur RC, Gur RE, Satterthwaite TD.

Cereb Cortex. 2019 May 1;29(5):2102-2114. doi: 10.1093/cercor/bhy091.

PMID:
29688290
43.

Automated Multi-Atlas Segmentation of Hippocampal and Extrahippocampal Subregions in Alzheimer's Disease at 3T and 7T: What Atlas Composition Works Best?

Xie L, Shinohara RT, Ittyerah R, Kuijf HJ, Pluta JB, Blom K, Kooistra M, Reijmer YD, Koek HL, Zwanenburg JJM, Wang H, Luijten PR, Geerlings MI, Das SR, Biessels GJ, Wolk DA, Yushkevich PA, Wisse LEM.

J Alzheimers Dis. 2018;63(1):217-225. doi: 10.3233/JAD-170932.

44.

MIMoSA: An Automated Method for Intermodal Segmentation Analysis of Multiple Sclerosis Brain Lesions.

Valcarcel AM, Linn KA, Vandekar SN, Satterthwaite TD, Muschelli J, Calabresi PA, Pham DL, Martin ML, Shinohara RT.

J Neuroimaging. 2018 Jul;28(4):389-398. doi: 10.1111/jon.12506. Epub 2018 Mar 8.

45.

An Automated Statistical Technique for Counting Distinct Multiple Sclerosis Lesions.

Dworkin JD, Linn KA, Oguz I, Fleishman GM, Bakshi R, Nair G, Calabresi PA, Henry RG, Oh J, Papinutto N, Pelletier D, Rooney W, Stern W, Sicotte NL, Reich DS, Shinohara RT; North American Imaging in Multiple Sclerosis Cooperative.

AJNR Am J Neuroradiol. 2018 Apr;39(4):626-633. doi: 10.3174/ajnr.A5556. Epub 2018 Feb 22.

46.

Diminished Cortical Thickness Is Associated with Impulsive Choice in Adolescence.

Pehlivanova M, Wolf DH, Sotiras A, Kaczkurkin AN, Moore TM, Ciric R, Cook PA, Garcia de La Garza A, Rosen AFG, Ruparel K, Sharma A, Shinohara RT, Roalf DR, Gur RC, Davatzikos C, Gur RE, Kable JW, Satterthwaite TD.

J Neurosci. 2018 Mar 7;38(10):2471-2481. doi: 10.1523/JNEUROSCI.2200-17.2018. Epub 2018 Feb 12.

47.

Vitamin D levels do not predict the stage of hepatic fibrosis in patients with non-alcoholic fatty liver disease: A PRISMA compliant systematic review and meta-analysis of pooled data.

Saberi B, Dadabhai AS, Nanavati J, Wang L, Shinohara RT, Mullin GE.

World J Hepatol. 2018 Jan 27;10(1):142-154. doi: 10.4254/wjh.v10.i1.142.

48.

Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.

Davatzikos C, Rathore S, Bakas S, Pati S, Bergman M, Kalarot R, Sridharan P, Gastounioti A, Jahani N, Cohen E, Akbari H, Tunc B, Doshi J, Parker D, Hsieh M, Sotiras A, Li H, Ou Y, Doot RK, Bilello M, Fan Y, Shinohara RT, Yushkevich P, Verma R, Kontos D.

J Med Imaging (Bellingham). 2018 Jan;5(1):011018. doi: 10.1117/1.JMI.5.1.011018. Epub 2018 Jan 11.

49.

Interpretable High-Dimensional Inference Via Score Projection with an Application in Neuroimaging.

Vandekar SN, Reiss PT, Shinohara RT.

J Am Stat Assoc. 2018;114(526):820-830. doi: 10.1080/01621459.2018.1448826. Epub 2018 Aug 7.

50.

Quantitative assessment of structural image quality.

Rosen AFG, Roalf DR, Ruparel K, Blake J, Seelaus K, Villa LP, Ciric R, Cook PA, Davatzikos C, Elliott MA, Garcia de La Garza A, Gennatas ED, Quarmley M, Schmitt JE, Shinohara RT, Tisdall MD, Craddock RC, Gur RE, Gur RC, Satterthwaite TD.

Neuroimage. 2018 Apr 1;169:407-418. doi: 10.1016/j.neuroimage.2017.12.059. Epub 2017 Dec 24.

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