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Glutamate weighted imaging contrast in gliomas with 7 Tesla magnetic resonance imaging.

Neal A, Moffat BA, Stein JM, Nanga RPR, Desmond P, Shinohara RT, Hariharan H, Glarin R, Drummond K, Morokoff A, Kwan P, Reddy R, O'Brien TJ, Davis KA.

Neuroimage Clin. 2019 Jan 29;22:101694. doi: 10.1016/j.nicl.2019.101694. [Epub ahead of print]


[Association between time-appropriate vaccinations in early childhood and individual and community-level factors in Japan].

Osawa E, Akiyama Y, Shinohara R, Ojima T, Imamura H, Asakura K, Nishiwaki Y, Ooka T, Yamagata Z.

Nihon Koshu Eisei Zasshi. 2019;66(2):67-75. doi: 10.11236/jph.66.2_67. Japanese.


Imaging outcome measures of neuroprotection and repair in MS: A consensus statement from NAIMS.

Oh J, Ontaneda D, Azevedo C, Klawiter EC, Absinta M, Arnold DL, Bakshi R, Calabresi PA, Crainiceanu C, Dewey B, Freeman L, Gauthier S, Henry R, Inglese M, Kolind S, Li DKB, Mainero C, Menon RS, Nair G, Narayanan S, Nelson F, Pelletier D, Rauscher A, Rooney W, Sati P, Schwartz D, Shinohara RT, Tagge I, Traboulsee A, Wang Y, Yoo Y, Yousry T, Zhang Y, Sicotte NL, Reich DS; North American Imaging in Multiple Sclerosis Cooperative.

Neurology. 2019 Mar 12;92(11):519-533. doi: 10.1212/WNL.0000000000007099. Epub 2019 Feb 20. Review.


Social defeat stress induces phosphorylation of extracellular signal-regulated kinase in the leptomeninges in mice.

Okamura S, Nagai H, Numa C, Nagai M, Shinohara R, Furuyashiki T.

Neuropsychopharmacol Rep. 2019 Feb 14. doi: 10.1002/npr2.12051. [Epub ahead of print]


[Association between unwillingness to deliver a next child and preterm delivery: a study based on the Healthy Parents and Children 21].

Uehara R, Shinohara R, Akiyama Y, Ichikawa K, Ojima T, Matsuura K, Yamazaki Y, Yamagata Z.

Nihon Koshu Eisei Zasshi. 2019;66(1):15-22. doi: 10.11236/jph.66.1_15. Japanese. No abstract available.


Alterations in white matter microstructure in individuals at persistent risk for psychosis.

Roalf DR, de la Garza AG, Rosen A, Calkins ME, Moore TM, Quarmley M, Ruparel K, Xia CH, Rupert PE, Satterthwaite TD, Shinohara RT, Elliott MA, Gur RC, Gur RE.

Mol Psychiatry. 2019 Feb 5. doi: 10.1038/s41380-019-0360-1. [Epub ahead of print]


A surface-in gradient of thalamic damage evolves in pediatric multiple sclerosis.

Fadda G, Brown RA, Magliozzi R, Aubert-Broche B, O'Mahony J, Shinohara RT, Banwell B, Marrie RA, Yeh EA, Collins DL, Arnold DL, Bar-Or A; Canadian Pediatric Demyelinating Disease Network.

Ann Neurol. 2019 Mar;85(3):340-351. doi: 10.1002/ana.25429. Epub 2019 Feb 20.


Structural and functional asymmetry of medial temporal subregions in unilateral temporal lobe epilepsy: A 7T MRI study.

Shah P, Bassett DS, Wisse LEM, Detre JA, Stein JM, Yushkevich PA, Shinohara RT, Elliott MA, Das SR, Davis KA.

Hum Brain Mapp. 2019 Jan 21. doi: 10.1002/hbm.24530. [Epub ahead of print]


The impact of peppermint oil on the irritable bowel syndrome: a meta-analysis of the pooled clinical data.

Alammar N, Wang L, Saberi B, Nanavati J, Holtmann G, Shinohara RT, Mullin GE.

BMC Complement Altern Med. 2019 Jan 17;19(1):21. doi: 10.1186/s12906-018-2409-0.


Multisite reliability and repeatability of an advanced brain MRI protocol.

Schwartz DL, Tagge I, Powers K, Ahn S, Bakshi R, Calabresi PA, Todd Constable R, Grinstead J, Henry RG, Nair G, Papinutto N, Pelletier D, Shinohara R, Oh J, Reich DS, Sicotte NL, Rooney WD; NAIMS Cooperative.

J Magn Reson Imaging. 2019 Jan 16. doi: 10.1002/jmri.26652. [Epub ahead of print]


Optogenetic stimulation of medial prefrontal cortex Drd1 neurons produces rapid and long-lasting antidepressant effects.

Hare BD, Shinohara R, Liu RJ, Pothula S, DiLeone RJ, Duman RS.

Nat Commun. 2019 Jan 15;10(1):223. doi: 10.1038/s41467-018-08168-9.


The relationship between the development of social competence and sleep in infants: a longitudinal study.

Tomisaki E, Tanaka E, Watanabe T, Shinohara R, Hirano M, Onda Y, Mochizuki Y, Yato Y, Yamakawa N, Anme T; Japan Children’s Study Group.

Child Adolesc Psychiatry Ment Health. 2018 Dec 18;12:53. doi: 10.1186/s13034-018-0258-8. eCollection 2018.


Influence of the difference between implant body and screw materials on abutment screw loosening.

Shinohara R, Ueda K, Watanabe F.

Dent Mater J. 2019 Feb 8;38(1):150-156. doi: 10.4012/dmj.2018-023. Epub 2018 Nov 17.


A dual modeling approach to automatic segmentation of cerebral T2 hyperintensities and T1 black holes in multiple sclerosis.

Valcarcel AM, Linn KA, Khalid F, Vandekar SN, Tauhid S, Satterthwaite TD, Muschelli J, Martin ML, Bakshi R, Shinohara RT.

Neuroimage Clin. 2018;20:1211-1221. doi: 10.1016/j.nicl.2018.10.013. Epub 2018 Oct 16.


Problematic Internet use and its associations with health-related symptoms and lifestyle habits among rural Japanese adolescents.

Kojima R, Sato M, Akiyama Y, Shinohara R, Mizorogi S, Suzuki K, Yokomichi H, Yamagata Z.

Psychiatry Clin Neurosci. 2019 Jan;73(1):20-26. doi: 10.1111/pcn.12791. Epub 2018 Dec 4.


Gradient Boosted Trees for Corrective Learning.

Oguz BU, Shinohara RT, Yushkevich PA, Oguz I.

Mach Learn Med Imaging. 2017 Sep;10541:203-211. doi: 10.1007/978-3-319-67389-9_24. Epub 2017 Sep 7.


Automated Integration of Multimodal MRI for the Probabilistic Detection of the Central Vein Sign in White Matter Lesions.

Dworkin JD, Sati P, Solomon A, Pham DL, Watts R, Martin ML, Ontaneda D, Schindler MK, Reich DS, Shinohara RT.

AJNR Am J Neuroradiol. 2018 Oct;39(10):1806-1813. doi: 10.3174/ajnr.A5765. Epub 2018 Sep 13.


The landscape of NeuroImage-ing research.

Dworkin JD, Shinohara RT, Bassett DS.

Neuroimage. 2018 Dec;183:872-883. doi: 10.1016/j.neuroimage.2018.09.005. Epub 2018 Sep 6.


Network changes associated with transdiagnostic depressive symptom improvement following cognitive behavioral therapy in MDD and PTSD.

Yang Z, Gu S, Honnorat N, Linn KA, Shinohara RT, Aselcioglu I, Bruce S, Oathes DJ, Davatzikos C, Satterthwaite TD, Bassett DS, Sheline YI.

Mol Psychiatry. 2018 Dec;23(12):2314-2323. doi: 10.1038/s41380-018-0201-7. Epub 2018 Aug 13.


Linked dimensions of psychopathology and connectivity in functional brain networks.

Xia CH, Ma Z, Ciric R, Gu S, Betzel RF, Kaczkurkin AN, Calkins ME, Cook PA, García de la Garza A, Vandekar SN, Cui Z, Moore TM, Roalf DR, Ruparel K, Wolf DH, Davatzikos C, Gur RC, Gur RE, Shinohara RT, Bassett DS, Satterthwaite TD.

Nat Commun. 2018 Aug 1;9(1):3003. doi: 10.1038/s41467-018-05317-y.


[The relationship between parenting anxiety in mothers and the resources from which they routinely sought advice: The final "Healthy Parents and Children 21" survey].

Yamazaki S, Shinohara R, Akiyama Y, Ichikawa K, Ojima T, Tamakoshi K, Matsuura K, Yamazaki Y, Yamagata Z.

Nihon Koshu Eisei Zasshi. 2018;65(7):334-346. doi: 10.11236/jph.65.7_334. Japanese.


Repeated social defeat stress impairs attentional set shifting irrespective of social avoidance and increases female preference associated with heightened anxiety.

Higashida S, Nagai H, Nakayama K, Shinohara R, Taniguchi M, Nagai M, Hikida T, Yawata S, Ago Y, Kitaoka S, Narumiya S, Furuyashiki T.

Sci Rep. 2018 Jul 11;8(1):10454. doi: 10.1038/s41598-018-28803-1.


Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data.

Yu M, Linn KA, Cook PA, Phillips ML, McInnis M, Fava M, Trivedi MH, Weissman MM, Shinohara RT, Sheline YI.

Hum Brain Mapp. 2018 Nov;39(11):4213-4227. doi: 10.1002/hbm.24241. Epub 2018 Jul 1.


Awareness of cardiopulmonary resuscitation among parents of 3-year-old children.

Uehara R, Shinohara R, Akiyama Y, Ichikawa K, Ojima T, Matsuura K, Yamazaki Y, Yamagata Z.

Pediatr Int. 2018 Sep;60(9):869-874. doi: 10.1111/ped.13649.


Retinal Parameters as Compared with Head Circumference, Height, Weight, and Body Mass Index in Children in Kenya and Bhutan.

Grundy SJ, Tshering L, Wanjala SW, Diamond MB, Audi MS, Prasad S, Shinohara RT, Rogo D, Wangmo D, Wangdi U, Aarayang A, Tshering T, Burke TF, Mateen FJ.

Am J Trop Med Hyg. 2018 Aug;99(2):482-488. doi: 10.4269/ajtmh.17-0943. Epub 2018 Jun 7.


On testing for spatial correspondence between maps of human brain structure and function.

Alexander-Bloch AF, Shou H, Liu S, Satterthwaite TD, Glahn DC, Shinohara RT, Vandekar SN, Raznahan A.

Neuroimage. 2018 Sep;178:540-551. doi: 10.1016/j.neuroimage.2018.05.070. Epub 2018 Jun 1.


Normative brain size variation and brain shape diversity in humans.

Reardon PK, Seidlitz J, Vandekar S, Liu S, Patel R, Park MTM, Alexander-Bloch A, Clasen LS, Blumenthal JD, Lalonde FM, Giedd JN, Gur RC, Gur RE, Lerch JP, Chakravarty MM, Satterthwaite TD, Shinohara RT, Raznahan A.

Science. 2018 Jun 15;360(6394):1222-1227. doi: 10.1126/science.aar2578. Epub 2018 May 31.


Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.

Oguz I, Carass A, Pham DL, Roy S, Subbana N, Calabresi PA, Yushkevich PA, Shinohara RT, Prince JL.

Brainlesion (2017). 2018;10670:3-14. doi: 10.1007/978-3-319-75238-9_1. Epub 2018 Feb 17.


Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation.

Fleishman GM, Valcarcel A, Pham DL, Roy S, Calabresi PA, Yushkevich P, Shinohara RT, Oguz I.

Brainlesion (2017). 2018;10670:43-54. Epub 2018 Feb 17.


Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion.

Dong M, Oguz I, Subbana N, Calabresi P, Shinohara RT, Yushkevich P.

Patch Based Tech Med Imaging (2017). 2017 Sep;10530:138-145. doi: 10.1007/978-3-319-67434-6_16. Epub 2017 Aug 31.


Gestational Age is Dimensionally Associated with Structural Brain Network Abnormalities Across Development.

Nassar R, Kaczkurkin AN, Xia CH, Sotiras A, Pehlivanova M, Moore TM, Garcia de La Garza A, Roalf DR, Rosen AFG, Lorch SA, Ruparel K, Shinohara RT, Davatzikos C, Gur RC, Gur RE, Satterthwaite TD.

Cereb Cortex. 2018 Apr 21. doi: 10.1093/cercor/bhy091. [Epub ahead of print]


Automated Multi-Atlas Segmentation of Hippocampal and Extrahippocampal Subregions in Alzheimer's Disease at 3T and 7T: What Atlas Composition Works Best?

Xie L, Shinohara RT, Ittyerah R, Kuijf HJ, Pluta JB, Blom K, Kooistra M, Reijmer YD, Koek HL, Zwanenburg JJM, Wang H, Luijten PR, Geerlings MI, Das SR, Biessels GJ, Wolk DA, Yushkevich PA, Wisse LEM.

J Alzheimers Dis. 2018;63(1):217-225. doi: 10.3233/JAD-170932.


Detection of 2-aminoethylphosphonic acid in suspended particles in an ultraoligotrophic lake: a two-dimensional nuclear magnetic resonance (2D-NMR) study.

Shinohara R, Iwata T, Ikarashi Y, Sano T.

Environ Sci Pollut Res Int. 2018 Oct;25(30):30739-30743. doi: 10.1007/s11356-018-1744-5. Epub 2018 Mar 22.


MIMoSA: An Automated Method for Intermodal Segmentation Analysis of Multiple Sclerosis Brain Lesions.

Valcarcel AM, Linn KA, Vandekar SN, Satterthwaite TD, Muschelli J, Calabresi PA, Pham DL, Martin ML, Shinohara RT.

J Neuroimaging. 2018 Jul;28(4):389-398. doi: 10.1111/jon.12506. Epub 2018 Mar 8.


An Automated Statistical Technique for Counting Distinct Multiple Sclerosis Lesions.

Dworkin JD, Linn KA, Oguz I, Fleishman GM, Bakshi R, Nair G, Calabresi PA, Henry RG, Oh J, Papinutto N, Pelletier D, Rooney W, Stern W, Sicotte NL, Reich DS, Shinohara RT; North American Imaging in Multiple Sclerosis Cooperative.

AJNR Am J Neuroradiol. 2018 Apr;39(4):626-633. doi: 10.3174/ajnr.A5556. Epub 2018 Feb 22.


Diminished Cortical Thickness is Associated with Impulsive Choice in Adolescence.

Pehlivanova M, Wolf DH, Sotiras A, Kaczkurkin A, Moore TM, Ciric R, Cook PA, de La Garza AG, Rosen A, Ruparel K, Sharma A, Shinohara RT, Roalf DR, Gur RC, Davatzikos C, Gur RE, Kable JW, Satterthwaite TD.

J Neurosci. 2018 Feb 12. pii: 2200-17. doi: 10.1523/JNEUROSCI.2200-17.2018. [Epub ahead of print]


Vitamin D levels do not predict the stage of hepatic fibrosis in patients with non-alcoholic fatty liver disease: A PRISMA compliant systematic review and meta-analysis of pooled data.

Saberi B, Dadabhai AS, Nanavati J, Wang L, Shinohara RT, Mullin GE.

World J Hepatol. 2018 Jan 27;10(1):142-154. doi: 10.4254/wjh.v10.i1.142.


Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.

Davatzikos C, Rathore S, Bakas S, Pati S, Bergman M, Kalarot R, Sridharan P, Gastounioti A, Jahani N, Cohen E, Akbari H, Tunc B, Doshi J, Parker D, Hsieh M, Sotiras A, Li H, Ou Y, Doot RK, Bilello M, Fan Y, Shinohara RT, Yushkevich P, Verma R, Kontos D.

J Med Imaging (Bellingham). 2018 Jan;5(1):011018. doi: 10.1117/1.JMI.5.1.011018. Epub 2018 Jan 11.


Quantitative assessment of structural image quality.

Rosen AFG, Roalf DR, Ruparel K, Blake J, Seelaus K, Villa LP, Ciric R, Cook PA, Davatzikos C, Elliott MA, Garcia de La Garza A, Gennatas ED, Quarmley M, Schmitt JE, Shinohara RT, Tisdall MD, Craddock RC, Gur RE, Gur RC, Satterthwaite TD.

Neuroimage. 2018 Apr 1;169:407-418. doi: 10.1016/j.neuroimage.2017.12.059. Epub 2017 Dec 24.


Yield of Brain MRI in Clinically Diagnosed Epilepsy in the Kingdom of Bhutan: A Prospective Study.

Bruno V, Klein JP, Nidup D, Nirola DK, Tshering L, Deki S, Clark SJ, Linn KA, Shinohara RT, Dorji C, Pokhrel DR, Dema U, Mateen FJ; Bhutan Epilepsy Project.

Ann Glob Health. 2017 May - Aug;83(3-4):415-422. doi: 10.1016/j.aogh.2017.02.001. Epub 2017 Apr 7.


Mapping the structural and functional network architecture of the medial temporal lobe using 7T MRI.

Shah P, Bassett DS, Wisse LEM, Detre JA, Stein JM, Yushkevich PA, Shinohara RT, Pluta JB, Valenciano E, Daffner M, Wolk DA, Elliott MA, Litt B, Davis KA, Das SR.

Hum Brain Mapp. 2018 Feb;39(2):851-865. doi: 10.1002/hbm.23887. Epub 2017 Nov 20.


Harmonization of cortical thickness measurements across scanners and sites.

Fortin JP, Cullen N, Sheline YI, Taylor WD, Aselcioglu I, Cook PA, Adams P, Cooper C, Fava M, McGrath PJ, McInnis M, Phillips ML, Trivedi MH, Weissman MM, Shinohara RT.

Neuroimage. 2018 Feb 15;167:104-120. doi: 10.1016/j.neuroimage.2017.11.024. Epub 2017 Nov 17.


[Neural circuits regulating stress resilience].

Shinohara R.

Nihon Yakurigaku Zasshi. 2017;150(5):261. doi: 10.1254/fpj.150.261. Japanese. No abstract available.


The NAIMS cooperative pilot project: Design, implementation and future directions.

Oh J, Bakshi R, Calabresi PA, Crainiceanu C, Henry RG, Nair G, Papinutto N, Constable RT, Reich DS, Pelletier D, Rooney W, Schwartz D, Tagge I, Shinohara RT, Simon JH, Sicotte NL; NAIMS Cooperative Steering Committee.

Mult Scler. 2018 Nov;24(13):1770-1772. doi: 10.1177/1352458517739990. Epub 2017 Nov 6.


Sex differences in estimated brain metabolism in relation to body growth through adolescence.

Vandekar SN, Shou H, Satterthwaite TD, Shinohara RT, Merikangas AK, Roalf DR, Ruparel K, Rosen A, Gennatas ED, Elliott MA, Davatzikos C, Gur RC, Gur RE, Detre JA.

J Cereb Blood Flow Metab. 2019 Mar;39(3):524-535. doi: 10.1177/0271678X17737692. Epub 2017 Oct 26.


Faster family-wise error control for neuroimaging with a parametric bootstrap.

Vandekar SN, Satterthwaite TD, Rosen A, Ciric R, Roalf DR, Ruparel K, Gur RC, Gur RE, Shinohara RT.

Biostatistics. 2018 Oct 1;19(4):497-513. doi: 10.1093/biostatistics/kxx051.


Radiomic subtyping improves disease stratification beyond key molecular, clinical, and standard imaging characteristics in patients with glioblastoma.

Kickingereder P, Neuberger U, Bonekamp D, Piechotta PL, Götz M, Wick A, Sill M, Kratz A, Shinohara RT, Jones DTW, Radbruch A, Muschelli J, Unterberg A, Debus J, Schlemmer HP, Herold-Mende C, Pfister S, von Deimling A, Wick W, Capper D, Maier-Hein KH, Bendszus M.

Neuro Oncol. 2018 May 18;20(6):848-857. doi: 10.1093/neuonc/nox188.


Stereoselective synthesis of 17,18-epoxy derivative of EPA and stereoisomers of isoleukotoxin diol by ring opening of TMS-substituted epoxide with dimsyl sodium.

Nanba Y, Shinohara R, Morita M, Kobayashi Y.

Org Biomol Chem. 2017 Oct 18;15(40):8614-8626. doi: 10.1039/c7ob02291c.


Fully Bayesian spectral methods for imaging data.

Reich BJ, Guinness J, Vandekar SN, Shinohara RT, Staicu AM.

Biometrics. 2018 Jun;74(2):645-652. doi: 10.1111/biom.12782. Epub 2017 Sep 28.


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