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Items: 1 to 50 of 64

1.

Genetically Encoded Fluorescent Indicator GRAPHIC Delineates Intercellular Connections.

Kinoshita N, Huang AJY, McHugh TJ, Suzuki SC, Masai I, Kim IH, Soderling SH, Miyawaki A, Shimogori T.

iScience. 2019 May 31;15:28-38. doi: 10.1016/j.isci.2019.04.013. Epub 2019 Apr 11.

2.

Spatially restricted long-term transgene expression in the developing skin used for studying the interaction of epidermal development and sensory innervation.

Chan C, Kamiguchi H, Shimogori T.

Dev Growth Differ. 2019 May;61(4):276-282. doi: 10.1111/dgd.12603. Epub 2019 Apr 9.

PMID:
30968390
3.

Rapid dissemination of alpha-synuclein seeds through neural circuits in an in-vivo prion-like seeding experiment.

Okuzumi A, Kurosawa M, Hatano T, Takanashi M, Nojiri S, Fukuhara T, Yamanaka T, Miyazaki H, Yoshinaga S, Furukawa Y, Shimogori T, Hattori N, Nukina N.

Acta Neuropathol Commun. 2018 Sep 19;6(1):96. doi: 10.1186/s40478-018-0587-0.

4.

Semaphorin 6D reverse signaling controls macrophage lipid metabolism and anti-inflammatory polarization.

Kang S, Nakanishi Y, Kioi Y, Okuzaki D, Kimura T, Takamatsu H, Koyama S, Nojima S, Nishide M, Hayama Y, Kinehara Y, Kato Y, Nakatani T, Shimogori T, Takagi J, Toyofuku T, Kumanogoh A.

Nat Immunol. 2018 Jun;19(6):561-570. doi: 10.1038/s41590-018-0108-0. Epub 2018 May 18.

PMID:
29777213
5.

Sonic Hedgehog Is a Remotely Produced Cue that Controls Axon Guidance Trans-axonally at a Midline Choice Point.

Peng J, Fabre PJ, Dolique T, Swikert SM, Kermasson L, Shimogori T, Charron F.

Neuron. 2018 Jan 17;97(2):326-340.e4. doi: 10.1016/j.neuron.2017.12.028.

6.

Digital gene atlas of neonate common marmoset brain.

Shimogori T, Abe A, Go Y, Hashikawa T, Kishi N, Kikuchi SS, Kita Y, Niimi K, Nishibe H, Okuno M, Saga K, Sakurai M, Sato M, Serizawa T, Suzuki S, Takahashi E, Tanaka M, Tatsumoto S, Toki M, U M, Wang Y, Windak KJ, Yamagishi H, Yamashita K, Yoda T, Yoshida AC, Yoshida C, Yoshimoto T, Okano H.

Neurosci Res. 2018 Mar;128:1-13. doi: 10.1016/j.neures.2017.10.009. Epub 2017 Oct 27.

PMID:
29111135
7.

Nucleocytoplasmic Shuttling of Histone Deacetylase 9 Controls Activity-Dependent Thalamocortical Axon Branching.

Alchini R, Sato H, Matsumoto N, Shimogori T, Sugo N, Yamamoto N.

Sci Rep. 2017 Jul 20;7(1):6024. doi: 10.1038/s41598-017-06243-7.

8.

Mouse Fgf8-Cre-LacZ lineage analysis defines the territory of the postnatal mammalian isthmus.

Watson C, Shimogori T, Puelles L.

J Comp Neurol. 2017 Aug 15;525(12):2782-2799. doi: 10.1002/cne.24242. Epub 2017 May 30.

PMID:
28510270
9.

Different regulation of limb development by p63 transcript variants.

Kawata M, Taniguchi Y, Mori D, Yano F, Ohba S, Chung UI, Shimogori T, Mills AA, Tanaka S, Saito T.

PLoS One. 2017 Mar 23;12(3):e0174122. doi: 10.1371/journal.pone.0174122. eCollection 2017.

10.

Brain/MINDS: A Japanese National Brain Project for Marmoset Neuroscience.

Okano H, Sasaki E, Yamamori T, Iriki A, Shimogori T, Yamaguchi Y, Kasai K, Miyawaki A.

Neuron. 2016 Nov 2;92(3):582-590. doi: 10.1016/j.neuron.2016.10.018.

11.

FUS/TLS acts as an aggregation-dependent modifier of polyglutamine disease model mice.

Kino Y, Washizu C, Kurosawa M, Yamada M, Doi H, Takumi T, Adachi H, Katsuno M, Sobue G, Hicks GG, Hattori N, Shimogori T, Nukina N.

Sci Rep. 2016 Oct 14;6:35236. doi: 10.1038/srep35236.

12.

Differential roles of NF-Y transcription factor in ER chaperone expression and neuronal maintenance in the CNS.

Yamanaka T, Tosaki A, Miyazaki H, Kurosawa M, Koike M, Uchiyama Y, Maity SN, Misawa H, Takahashi R, Shimogori T, Hattori N, Nukina N.

Sci Rep. 2016 Sep 30;6:34575. doi: 10.1038/srep34575.

13.

Reversal of axonal growth defects in an extraocular fibrosis model by engineering the kinesin-microtubule interface.

Minoura I, Takazaki H, Ayukawa R, Saruta C, Hachikubo Y, Uchimura S, Hida T, Kamiguchi H, Shimogori T, Muto E.

Nat Commun. 2016 Jan 18;7:10058. doi: 10.1038/ncomms10058.

14.

Genome-wide analyses in neuronal cells reveal that upstream transcription factors regulate lysosomal gene expression.

Yamanaka T, Tosaki A, Kurosawa M, Shimogori T, Hattori N, Nukina N.

FEBS J. 2016 Mar;283(6):1077-87. doi: 10.1111/febs.13650. Epub 2016 Feb 11.

15.

Migration of Founder Epithelial Cells Drives Proper Molar Tooth Positioning and Morphogenesis.

Prochazka J, Prochazkova M, Du W, Spoutil F, Tureckova J, Hoch R, Shimogori T, Sedlacek R, Rubenstein JL, Wittmann T, Klein OD.

Dev Cell. 2015 Dec 21;35(6):713-24. doi: 10.1016/j.devcel.2015.11.025.

16.

[Molecular mechanisms for cortical area map formation and activity dependent dendrite formation].

Shimogori T.

Seikagaku. 2015 Feb;87(1):133-7. Review. Japanese. No abstract available.

PMID:
26571568
17.

Serine 403-phosphorylated p62/SQSTM1 immunoreactivity in inclusions of neurodegenerative diseases.

Kurosawa M, Matsumoto G, Sumikura H, Hatsuta H, Murayama S, Sakurai T, Shimogori T, Hattori N, Nukina N.

Neurosci Res. 2016 Feb;103:64-70. doi: 10.1016/j.neures.2015.08.002. Epub 2015 Aug 21.

PMID:
26302676
18.

ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues.

Oomoto I, Suzuki-Hirano A, Umeshima H, Han YW, Yanagisawa H, Carlton P, Harada Y, Kengaku M, Okamoto A, Shimogori T, Wang DO.

Nucleic Acids Res. 2015 Oct 30;43(19):e126. doi: 10.1093/nar/gkv614. Epub 2015 Jun 22.

19.

TBK1 controls autophagosomal engulfment of polyubiquitinated mitochondria through p62/SQSTM1 phosphorylation.

Matsumoto G, Shimogori T, Hattori N, Nukina N.

Hum Mol Genet. 2015 Aug 1;24(15):4429-42. doi: 10.1093/hmg/ddv179. Epub 2015 May 13.

PMID:
25972374
20.

FUS/TLS deficiency causes behavioral and pathological abnormalities distinct from amyotrophic lateral sclerosis.

Kino Y, Washizu C, Kurosawa M, Yamada M, Miyazaki H, Akagi T, Hashikawa T, Doi H, Takumi T, Hicks GG, Hattori N, Shimogori T, Nukina N.

Acta Neuropathol Commun. 2015 Apr 25;3:24. doi: 10.1186/s40478-015-0202-6.

21.

Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9.

Liu J, Merkle FT, Gandhi AV, Gagnon JA, Woods IG, Chiu CN, Shimogori T, Schier AF, Prober DA.

Development. 2015 Mar 15;142(6):1113-24. doi: 10.1242/dev.117424. Epub 2015 Feb 27.

22.

Singular localization of sodium channel β4 subunit in unmyelinated fibres and its role in the striatum.

Miyazaki H, Oyama F, Inoue R, Aosaki T, Abe T, Kiyonari H, Kino Y, Kurosawa M, Shimizu J, Ogiwara I, Yamakawa K, Koshimizu Y, Fujiyama F, Kaneko T, Shimizu H, Nagatomo K, Yamada K, Shimogori T, Hattori N, Miura M, Nukina N.

Nat Commun. 2014 Nov 21;5:5525. doi: 10.1038/ncomms6525.

PMID:
25413837
23.

Depletion of p62 reduces nuclear inclusions and paradoxically ameliorates disease phenotypes in Huntington's model mice.

Kurosawa M, Matsumoto G, Kino Y, Okuno M, Kurosawa-Yamada M, Washizu C, Taniguchi H, Nakaso K, Yanagawa T, Warabi E, Shimogori T, Sakurai T, Hattori N, Nukina N.

Hum Mol Genet. 2015 Feb 15;24(4):1092-105. doi: 10.1093/hmg/ddu522. Epub 2014 Oct 9.

PMID:
25305080
24.

Cell-autonomous repression of Shh by transcription factor Pax6 regulates diencephalic patterning by controlling the central diencephalic organizer.

Caballero IM, Manuel MN, Molinek M, Quintana-Urzainqui I, Mi D, Shimogori T, Price DJ.

Cell Rep. 2014 Sep 11;8(5):1405-18. doi: 10.1016/j.celrep.2014.07.051. Epub 2014 Aug 28.

25.

Large-scale RNA interference screening in mammalian cells identifies novel regulators of mutant huntingtin aggregation.

Yamanaka T, Wong HK, Tosaki A, Bauer PO, Wada K, Kurosawa M, Shimogori T, Hattori N, Nukina N.

PLoS One. 2014 Apr 4;9(4):e93891. doi: 10.1371/journal.pone.0093891. eCollection 2014.

26.

Retinal Input Directs the Recruitment of Inhibitory Interneurons into Thalamic Visual Circuits.

Golding B, Pouchelon G, Bellone C, Murthy S, Di Nardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D.

Neuron. 2014 Mar 19;81(6):1443. doi: 10.1016/j.neuron.2014.03.005. Epub 2014 Mar 19. No abstract available.

27.

Retinal input directs the recruitment of inhibitory interneurons into thalamic visual circuits.

Golding B, Pouchelon G, Bellone C, Murthy S, Di Nardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D.

Neuron. 2014 Mar 5;81(5):1057-1069. doi: 10.1016/j.neuron.2014.01.032. Erratum in: Neuron. 2014 Mar 19;81(6):1443.

28.

NF-Y inactivation causes atypical neurodegeneration characterized by ubiquitin and p62 accumulation and endoplasmic reticulum disorganization.

Yamanaka T, Tosaki A, Kurosawa M, Matsumoto G, Koike M, Uchiyama Y, Maity SN, Shimogori T, Hattori N, Nukina N.

Nat Commun. 2014 Feb 25;5:3354. doi: 10.1038/ncomms4354.

PMID:
24566496
29.

The indirect role of fibroblast growth factor-8 in defining neurogenic niches of the olfactory/GnRH systems.

Forni PE, Bharti K, Flannery EM, Shimogori T, Wray S.

J Neurosci. 2013 Dec 11;33(50):19620-34. doi: 10.1523/JNEUROSCI.3238-13.2013.

30.

BTBD3 controls dendrite orientation toward active axons in mammalian neocortex.

Matsui A, Tran M, Yoshida AC, Kikuchi SS, U M, Ogawa M, Shimogori T.

Science. 2013 Nov 29;342(6162):1114-8. doi: 10.1126/science.1244505. Epub 2013 Oct 31.

31.

A bilirubin-inducible fluorescent protein from eel muscle.

Kumagai A, Ando R, Miyatake H, Greimel P, Kobayashi T, Hirabayashi Y, Shimogori T, Miyawaki A.

Cell. 2013 Jun 20;153(7):1602-11. doi: 10.1016/j.cell.2013.05.038. Epub 2013 Jun 13.

32.

Building the gateway to consciousness-about the development of the thalamus.

Scholpp S, Shimogori T.

Front Neurosci. 2013 Jun 4;7:94. doi: 10.3389/fnins.2013.00094. eCollection 2013. No abstract available.

33.

Dual origins of the mammalian accessory olfactory bulb revealed by an evolutionarily conserved migratory stream.

Huilgol D, Udin S, Shimogori T, Saha B, Roy A, Aizawa S, Hevner RF, Meyer G, Ohshima T, Pleasure SJ, Zhao Y, Tole S.

Nat Neurosci. 2013 Feb;16(2):157-65. doi: 10.1038/nn.3297. Epub 2013 Jan 6.

PMID:
23292680
34.

A SINE-derived element constitutes a unique modular enhancer for mammalian diencephalic Fgf8.

Nakanishi A, Kobayashi N, Suzuki-Hirano A, Nishihara H, Sasaki T, Hirakawa M, Sumiyama K, Shimogori T, Okada N.

PLoS One. 2012;7(8):e43785. doi: 10.1371/journal.pone.0043785. Epub 2012 Aug 24.

35.

Diversity of thalamic progenitor cells and postmitotic neurons.

Nakagawa Y, Shimogori T.

Eur J Neurosci. 2012 May;35(10):1554-62. doi: 10.1111/j.1460-9568.2012.08089.x. Review.

PMID:
22607001
36.

Comparative anatomy of marmoset and mouse cortex from genomic expression.

Mashiko H, Yoshida AC, Kikuchi SS, Niimi K, Takahashi E, Aruga J, Okano H, Shimogori T.

J Neurosci. 2012 Apr 11;32(15):5039-53. doi: 10.1523/JNEUROSCI.4788-11.2012. Erratum in: J Neurosci. 2012 Dec 5;32(49):17932.

37.

Early B-cell factors 2 and 3 (EBF2/3) regulate early migration of Cajal-Retzius cells from the cortical hem.

Chiara F, Badaloni A, Croci L, Yeh ML, Cariboni A, Hoerder-Suabedissen A, Consalez GG, Eickholt B, Shimogori T, Parnavelas JG, Rakić S.

Dev Biol. 2012 May 1;365(1):277-89. doi: 10.1016/j.ydbio.2012.02.034. Epub 2012 Mar 6.

38.

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.

Hama H, Kurokawa H, Kawano H, Ando R, Shimogori T, Noda H, Fukami K, Sakaue-Sawano A, Miyawaki A.

Nat Neurosci. 2011 Aug 30;14(11):1481-8. doi: 10.1038/nn.2928.

PMID:
21878933
39.

Mouse in utero electroporation: controlled spatiotemporal gene transfection.

Matsui A, Yoshida AC, Kubota M, Ogawa M, Shimogori T.

J Vis Exp. 2011 Aug 15;(54). pii: 3024. doi: 10.3791/3024.

40.

Region-specific gene expression in early postnatal mouse thalamus.

Yuge K, Kataoka A, Yoshida AC, Itoh D, Aggarwal M, Mori S, Blackshaw S, Shimogori T.

J Comp Neurol. 2011 Feb 15;519(3):544-61. doi: 10.1002/cne.22532.

PMID:
21192083
41.

Dynamic spatiotemporal gene expression in embryonic mouse thalamus.

Suzuki-Hirano A, Ogawa M, Kataoka A, Yoshida AC, Itoh D, Ueno M, Blackshaw S, Shimogori T.

J Comp Neurol. 2011 Feb 15;519(3):528-43. doi: 10.1002/cne.22531.

PMID:
21192082
42.

Molecular pathways controlling development of thalamus and hypothalamus: from neural specification to circuit formation.

Blackshaw S, Scholpp S, Placzek M, Ingraham H, Simerly R, Shimogori T.

J Neurosci. 2010 Nov 10;30(45):14925-30. doi: 10.1523/JNEUROSCI.4499-10.2010. Review.

43.

FGF8 acts as a classic diffusible morphogen to pattern the neocortex.

Toyoda R, Assimacopoulos S, Wilcoxon J, Taylor A, Feldman P, Suzuki-Hirano A, Shimogori T, Grove EA.

Development. 2010 Oct;137(20):3439-48. doi: 10.1242/dev.055392. Epub 2010 Sep 15.

44.

Emergence of mammals by emergency: exaptation.

Okada N, Sasaki T, Shimogori T, Nishihara H.

Genes Cells. 2010 Aug;15(8):801-12. doi: 10.1111/j.1365-2443.2010.01429.x. Epub 2010 Jul 14. Review.

45.

Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain.

Aggarwal M, Mori S, Shimogori T, Blackshaw S, Zhang J.

Magn Reson Med. 2010 Jul;64(1):249-61. doi: 10.1002/mrm.22426.

46.

A genomic atlas of mouse hypothalamic development.

Shimogori T, Lee DA, Miranda-Angulo A, Yang Y, Wang H, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, Qi L, Qian J, Blackshaw S.

Nat Neurosci. 2010 Jun;13(6):767-75. doi: 10.1038/nn.2545. Epub 2010 May 2.

47.

Segregation of ipsilateral retinal ganglion cell axons at the optic chiasm requires the Shh receptor Boc.

Fabre PJ, Shimogori T, Charron F.

J Neurosci. 2010 Jan 6;30(1):266-75. doi: 10.1523/JNEUROSCI.3778-09.2010.

48.

The role of Fgf8 in telencephalic and diencephalic patterning.

Suzuki-Hirano A, Shimogori T.

Semin Cell Dev Biol. 2009 Aug;20(6):719-25. doi: 10.1016/j.semcdb.2009.04.002. Epub 2009 Apr 10. Review.

PMID:
19596327
49.

Prdm proto-oncogene transcription factor family expression and interaction with the Notch-Hes pathway in mouse neurogenesis.

Kinameri E, Inoue T, Aruga J, Imayoshi I, Kageyama R, Shimogori T, Moore AW.

PLoS One. 2008;3(12):e3859. doi: 10.1371/journal.pone.0003859. Epub 2008 Dec 3.

50.

Fgf8 controls regional identity in the developing thalamus.

Kataoka A, Shimogori T.

Development. 2008 Sep;135(17):2873-81. doi: 10.1242/dev.021618. Epub 2008 Jul 24.

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