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Items: 1 to 50 of 84

1.

DnaJ chaperones contribute to canalization.

Hughes S, Vrinds I, de Roo J, Francke C, Shimeld SM, Woollard A, Sato A.

J Exp Zool A Ecol Integr Physiol. 2019 Jan 17. doi: 10.1002/jez.2254. [Epub ahead of print]

PMID:
30653842
2.

A Notch-regulated proliferative stem cell zone in the developing spinal cord is an ancestral vertebrate trait.

Lara-Ramirez R, Pérez-González C, Anselmi C, Patthey C, Shimeld SM.

Development. 2019 Jan 9;146(1). pii: dev166595. doi: 10.1242/dev.166595.

PMID:
30552127
3.

Developmental signature, synaptic connectivity and neurotransmission are conserved between vertebrate hair cells and tunicate coronal cells.

Rigon F, Gasparini F, Shimeld SM, Candiani S, Manni L.

J Comp Neurol. 2018 Apr 15;526(6):957-971. doi: 10.1002/cne.24382. Epub 2018 Jan 25.

PMID:
29277977
4.

The structure, splicing, synteny and expression of lamprey COE genes and the evolution of the COE gene family in chordates.

Lara-Ramírez R, Poncelet G, Patthey C, Shimeld SM.

Dev Genes Evol. 2017 Sep;227(5):319-338. doi: 10.1007/s00427-017-0591-6. Epub 2017 Sep 5.

PMID:
28871438
5.

Phylogenetics of Lophotrochozoan bHLH Genes and the Evolution of Lineage-Specific Gene Duplicates.

Bao Y, Xu F, Shimeld SM.

Genome Biol Evol. 2017 Apr 1;9(4):869-886. doi: 10.1093/gbe/evx047.

6.

Cerberus-Nodal-Lefty-Pitx signaling cascade controls left-right asymmetry in amphioxus.

Li G, Liu X, Xing C, Zhang H, Shimeld SM, Wang Y.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):3684-3689. doi: 10.1073/pnas.1620519114. Epub 2017 Mar 20.

7.

Identification of genes for engineering the male germline of Aedes aegypti and Ceratitis capitata.

Sutton ER, Yu Y, Shimeld SM, White-Cooper H, Alphey AL.

BMC Genomics. 2016 Nov 21;17(1):948.

8.

Insect transformation with piggyBac: getting the number of injections just right.

Gregory M, Alphey L, Morrison NI, Shimeld SM.

Insect Mol Biol. 2016 Jun;25(3):259-71. doi: 10.1111/imb.12220. Epub 2016 Mar 30.

9.

Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick.

Patthey C, Clifford H, Haerty W, Ponting CP, Shimeld SM, Begbie J.

Neural Dev. 2016 Jan 27;11:3. doi: 10.1186/s13064-016-0057-y.

10.

Molecular basis of canalization in an ascidian species complex adapted to different thermal conditions.

Sato A, Kawashima T, Fujie M, Hughes S, Satoh N, Shimeld SM.

Sci Rep. 2015 Nov 18;5:16717. doi: 10.1038/srep16717.

11.

Draft genome assemblies and predicted microRNA complements of the intertidal lophotrochozoans Patella vulgata (Mollusca, Patellogastropoda) and Spirobranchus (Pomatoceros) lamarcki (Annelida, Serpulida).

Kenny NJ, Namigai EK, Marlétaz F, Hui JH, Shimeld SM.

Mar Genomics. 2015 Dec;24 Pt 2:139-46. doi: 10.1016/j.margen.2015.07.004. Epub 2015 Aug 28.

PMID:
26319627
13.

Characterization of two neurogenin genes from the brook lamprey lampetra planeri and their expression in the lamprey nervous system.

Lara-Ramírez R, Patthey C, Shimeld SM.

Dev Dyn. 2015 Sep;244(9):1096-1108. doi: 10.1002/dvdy.24273. Epub 2015 Apr 23.

14.

The Lophotrochozoan TGF-β signalling cassette - diversification and conservation in a key signalling pathway.

Kenny NJ, Namigai EK, Dearden PK, Hui JH, Grande C, Shimeld SM.

Int J Dev Biol. 2014;58(6-8):533-49. doi: 10.1387/ijdb.140080nk.

15.
16.

Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity.

Chen WC, Pauls S, Bacha J, Elgar G, Loose M, Shimeld SM.

Dev Biol. 2014 Jun 15;390(2):261-72. doi: 10.1016/j.ydbio.2014.03.013. Epub 2014 Mar 28.

17.

Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata.

Kenny NJ, Sin YW, Shen X, Zhe Q, Wang W, Chan TF, Tobe SS, Shimeld SM, Chu KH, Hui JH.

Mar Drugs. 2014 Mar 11;12(3):1419-37. doi: 10.3390/md12031419.

18.

Right across the tree of life: the evolution of left-right asymmetry in the Bilateria.

Namigai EK, Kenny NJ, Shimeld SM.

Genesis. 2014 Jun;52(6):458-70. doi: 10.1002/dvg.22748. Epub 2014 Feb 26. Review.

PMID:
24510729
19.

The evolutionary history of vertebrate cranial placodes--I: cell type evolution.

Patthey C, Schlosser G, Shimeld SM.

Dev Biol. 2014 May 1;389(1):82-97. doi: 10.1016/j.ydbio.2014.01.017. Epub 2014 Feb 1. Review.

20.

The evolutionary history of vertebrate cranial placodes II. Evolution of ectodermal patterning.

Schlosser G, Patthey C, Shimeld SM.

Dev Biol. 2014 May 1;389(1):98-119. doi: 10.1016/j.ydbio.2014.01.019. Epub 2014 Feb 1. Review.

21.

Parallel evolution of chordate cis-regulatory code for development.

Doglio L, Goode DK, Pelleri MC, Pauls S, Frabetti F, Shimeld SM, Vavouri T, Elgar G.

PLoS Genet. 2013 Nov;9(11):e1003904. doi: 10.1371/journal.pgen.1003904. Epub 2013 Nov 21. Erratum in: PLoS Genet. 2013 Nov;9(11). doi:10.1371/annotation/1fc82a4b-f9ea-461a-8987-1152078688e4.

22.

Evolution of bilaterian central nervous systems: a single origin?

Holland LZ, Carvalho JE, Escriva H, Laudet V, Schubert M, Shimeld SM, Yu JK.

Evodevo. 2013 Oct 7;4(1):27. doi: 10.1186/2041-9139-4-27.

23.

Evolutionary conservation of the placodal transcriptional network during sexual and asexual development in chordates.

Gasparini F, Degasperi V, Shimeld SM, Burighel P, Manni L.

Dev Dyn. 2013 Jun;242(6):752-66. doi: 10.1002/dvdy.23957. Epub 2013 Apr 9.

24.

Additive multiple k-mer transcriptome of the keelworm Pomatoceros lamarckii (Annelida; Serpulidae) reveals annelid trochophore transcription factor cassette.

Kenny NJ, Shimeld SM.

Dev Genes Evol. 2012 Nov;222(6):325-39. doi: 10.1007/s00427-012-0416-6. Epub 2012 Oct 9.

PMID:
23053624
25.

Analysis of a deep transcriptome from the mantle tissue of Patella vulgata Linnaeus (Mollusca: Gastropoda: Patellidae) reveals candidate biomineralising genes.

Werner GD, Gemmell P, Grosser S, Hamer R, Shimeld SM.

Mar Biotechnol (NY). 2013 Apr;15(2):230-43. doi: 10.1007/s10126-012-9481-0. Epub 2012 Aug 3.

PMID:
22865210
26.

Evolutionary crossroads in developmental biology: cyclostomes (lamprey and hagfish).

Shimeld SM, Donoghue PC.

Development. 2012 Jun;139(12):2091-9. doi: 10.1242/dev.074716. Review.

27.

The origin and evolution of the ectodermal placodes.

Graham A, Shimeld SM.

J Anat. 2013 Jan;222(1):32-40. doi: 10.1111/j.1469-7580.2012.01506.x. Epub 2012 Apr 18. Review.

28.

A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus?

Paps J, Holland PW, Shimeld SM.

Brief Funct Genomics. 2012 Mar;11(2):177-86. doi: 10.1093/bfgp/els012. Review.

PMID:
22441554
29.

The formation and positioning of cilia in Ciona intestinalis embryos in relation to the generation and evolution of chordate left-right asymmetry.

Thompson H, Shaw MK, Dawe HR, Shimeld SM.

Dev Biol. 2012 Apr 15;364(2):214-23. doi: 10.1016/j.ydbio.2012.02.002. Epub 2012 Feb 10.

30.

Analysis of lamprey clustered Fox genes: insight into Fox gene evolution and expression in vertebrates.

Wotton KR, Shimeld SM.

Gene. 2011 Dec 1;489(1):30-40. doi: 10.1016/j.gene.2011.08.007. Epub 2011 Aug 31.

PMID:
21907770
31.

Expression of a Musashi-like gene in sexual and asexual development of the colonial chordate Botryllus schlosseri and phylogenetic analysis of the protein group.

Gasparini F, Shimeld SM, Ruffoni E, Burighel P, Manni L.

J Exp Zool B Mol Dev Evol. 2011 Dec 15;316(8):562-73. doi: 10.1002/jez.b.21431. Epub 2011 Aug 8.

PMID:
21826788
32.

Analysis of a botryllid enriched-full-length cDNA library: insight into the evolution of spliced leader trans-splicing in tunicates.

Gasparini F, Shimeld SM.

Dev Genes Evol. 2011 Mar;220(11-12):329-36. doi: 10.1007/s00427-011-0351-y. Epub 2011 Feb 18.

PMID:
21331664
33.

Clustered Fox genes in lophotrochozoans and the evolution of the bilaterian Fox gene cluster.

Shimeld SM, Boyle MJ, Brunet T, Luke GN, Seaver EC.

Dev Biol. 2010 Apr 15;340(2):234-48. doi: 10.1016/j.ydbio.2010.01.015. Epub 2010 Jan 21.

34.

An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals.

Takahashi T, McDougall C, Troscianko J, Chen WC, Jayaraman-Nagarajan A, Shimeld SM, Ferrier DE.

BMC Evol Biol. 2009 Sep 25;9:240. doi: 10.1186/1471-2148-9-240.

35.

Muscle differentiation in a colonial ascidian: organisation, gene expression and evolutionary considerations.

Degasperi V, Gasparini F, Shimeld SM, Sinigaglia C, Burighel P, Manni L.

BMC Dev Biol. 2009 Sep 8;9:48. doi: 10.1186/1471-213X-9-48.

36.

Evolutionary genomics of the Fox genes: origin of gene families and the ancestry of gene clusters.

Shimeld SM, Degnan B, Luke GN.

Genomics. 2010 May;95(5):256-60. doi: 10.1016/j.ygeno.2009.08.002. Epub 2009 Aug 10. Review.

37.
38.

The Fox genes of Branchiostoma floridae.

Yu JK, Mazet F, Chen YT, Huang SW, Jung KC, Shimeld SM.

Dev Genes Evol. 2008 Dec;218(11-12):629-38. doi: 10.1007/s00427-008-0229-9. Epub 2008 Sep 5.

PMID:
18773219
39.

[Peter Holland, homeobox genes, and the developmental basis of animal diversity].

Shimeld SM.

Ontogenez. 2008 May-Jun;39(3):231-7. Russian.

PMID:
18634337
40.
41.

Genesis and expansion of metazoan transcription factor gene classes.

Larroux C, Luke GN, Koopman P, Rokhsar DS, Shimeld SM, Degnan BM.

Mol Biol Evol. 2008 May;25(5):980-96. doi: 10.1093/molbev/msn047. Epub 2008 Feb 21.

PMID:
18296413
42.
43.
44.

The developmental expression of foxl2 in the dogfish Scyliorhinus canicula.

Wotton KR, French KE, Shimeld SM.

Gene Expr Patterns. 2007 Aug;7(7):793-7. Epub 2007 May 26.

PMID:
17591462
45.

Chordate betagamma-crystallins and the evolutionary developmental biology of the vertebrate lens.

Riyahi K, Shimeld SM.

Comp Biochem Physiol B Biochem Mol Biol. 2007 Jul;147(3):347-57. Epub 2007 Apr 12. Review.

PMID:
17493858
46.

Comparative genomics of vertebrate Fox cluster loci.

Wotton KR, Shimeld SM.

BMC Genomics. 2006 Oct 24;7:271.

48.

An ancient Fox gene cluster in bilaterian animals.

Mazet F, Amemiya CT, Shimeld SM.

Curr Biol. 2006 May 9;16(9):R314-6. No abstract available.

49.
50.

Urochordate betagamma-crystallin and the evolutionary origin of the vertebrate eye lens.

Shimeld SM, Purkiss AG, Dirks RP, Bateman OA, Slingsby C, Lubsen NH.

Curr Biol. 2005 Sep 20;15(18):1684-9.

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