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Items: 42

1.

A new polycipivirus identified in Colobopsis shohki.

Fukasawa F, Hirai M, Takaki Y, Shimane Y, Thomas CE, Urayama SI, Nunoura T, Koyama S.

Arch Virol. 2020 Mar;165(3):761-763. doi: 10.1007/s00705-019-04510-8. Epub 2019 Dec 21.

PMID:
31865471
2.

Structural comparisons of phosphoenolpyruvate carboxykinases reveal the evolutionary trajectories of these phosphodiester energy conversion enzymes.

Chiba Y, Miyakawa T, Shimane Y, Takai K, Tanokura M, Nozaki T.

J Biol Chem. 2019 Dec 13;294(50):19269-19278. doi: 10.1074/jbc.RA119.010920. Epub 2019 Oct 28.

PMID:
31662435
3.

Accurate high-throughput screening based on digital protein synthesis in a massively parallel femtoliter droplet array.

Zhang Y, Minagawa Y, Kizoe H, Miyazaki K, Iino R, Ueno H, Tabata KV, Shimane Y, Noji H.

Sci Adv. 2019 Aug 21;5(8):eaav8185. doi: 10.1126/sciadv.aav8185. eCollection 2019 Aug.

4.

Computational Analysis of the Interaction Energies between Amino Acid Residues of the Measles Virus Hemagglutinin and Its Receptors.

Xu F, Tanaka S, Watanabe H, Shimane Y, Iwasawa M, Ohishi K, Maruyama T.

Viruses. 2018 May 3;10(5). pii: E236. doi: 10.3390/v10050236.

5.

Complete Genome Sequence of Sphingobium sp. Strain YG1, a Lignin Model Dimer-Metabolizing Bacterium Isolated from Sediment in Kagoshima Bay, Japan.

Ohta Y, Shimane Y, Nishi S, Ichikawa J, Kurosawa K, Tsubouchi T, Ishii S.

Genome Announc. 2018 Apr 26;6(17). pii: e00267-18. doi: 10.1128/genomeA.00267-18.

6.

Complete Genome Sequence of Altererythrobacter sp. Strain B11, an Aromatic Monomer-Degrading Bacterium, Isolated from Deep-Sea Sediment under the Seabed off Kashima, Japan.

Maeda AH, Nishi S, Ishii S, Shimane Y, Kobayashi H, Ichikawa J, Kurosawa K, Arai W, Takami H, Ohta Y.

Genome Announc. 2018 Mar 22;6(12). pii: e00200-18. doi: 10.1128/genomeA.00200-18.

7.

Salinarchaeum chitinilyticum sp. nov., a chitin-degrading haloarchaeon isolated from commercial salt.

Minegishi H, Enomoto S, Echigo A, Shimane Y, Kondo Y, Inoma A, Kamekura M, Takai K, Itoh T, Ohkuma M, Ihara K, Takahashi-Ando N, Fukushima Y, Ishii S, Yoshida Y, Usami R.

Int J Syst Evol Microbiol. 2017 Jul;67(7):2274-2278. doi: 10.1099/ijsem.0.001941. Epub 2017 Jul 3.

PMID:
28671534
8.

Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt.

Kondo Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Tanaka A, Takahashi-Ando N, Fukushima Y, Yoshida Y, Ihara K, Usami R.

Int J Syst Evol Microbiol. 2016 Dec;66(12):5314-5319. doi: 10.1099/ijsem.0.001513. Epub 2016 Sep 23.

PMID:
27666573
9.

Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt.

Minegishi H, Shimogaki R, Enomoto S, Echigo A, Kondo Y, Nagaoka S, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Nunoura T, Takai K, Usami R.

Int J Syst Evol Microbiol. 2016 Dec;66(12):4975-4980. doi: 10.1099/ijsem.0.001455. Epub 2016 Aug 25.

PMID:
27562780
10.

Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample.

Shimane Y, Minegishi H, Echigo A, Kamekura M, Itoh T, Ohkuma M, Tsubouchi T, Usui K, Maruyama T, Usami R, Hatada Y.

Int J Syst Evol Microbiol. 2015 Nov;65(11):3830-3835. doi: 10.1099/ijsem.0.000501.

PMID:
28875923
11.

Halorubrum gandharaense sp. nov., an alkaliphilic haloarchaeon from commercial rock salt.

Kondo Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R.

Int J Syst Evol Microbiol. 2015 Aug;65(8):2345-50. doi: 10.1099/ijs.0.000261. Epub 2015 Apr 13.

PMID:
25870255
12.

Aneurinibacillus tyrosinisolvens sp. nov., a tyrosine-dissolving bacterium isolated from organics- and methane-rich seafloor sediment.

Tsubouchi T, Mori K, Miyamoto N, Fujiwara Y, Kawato M, Shimane Y, Usui K, Tokuda M, Uemura M, Tame A, Uematsu K, Maruyama T, Hatada Y.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):1999-2005. doi: 10.1099/ijs.0.000213. Epub 2015 Mar 26.

PMID:
25813364
13.

Halocalculus aciditolerans gen. nov., sp. nov., an acid-tolerant haloarchaeon isolated from commercial salt.

Minegishi H, Echigo A, Kuwahara A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Usami R.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1640-5. doi: 10.1099/ijs.0.000152. Epub 2015 Feb 26.

PMID:
25721724
14.

Halococcus agarilyticus sp. nov., an agar-degrading haloarchaeon isolated from commercial salt.

Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Usami R.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1634-9. doi: 10.1099/ijs.0.000151. Epub 2015 Feb 26.

PMID:
25721723
15.

Structurally distinct hybrid polymer/lipid nanoconstructs harboring a type-I ribotoxin as cellular imaging and glioblastoma-directed therapeutic vectors.

Mohamed MS, Veeranarayanan S, Baliyan A, Poulose AC, Nagaoka Y, Minegishi H, Iwai S, Shimane Y, Yoshida Y, Maekawa T, Kumar DS.

Macromol Biosci. 2014 Dec;14(12):1696-711. doi: 10.1002/mabi.201400248. Epub 2014 Sep 2.

PMID:
25181322
16.

Brevundimonas denitrificans sp. nov., a denitrifying bacterium isolated from deep subseafloor sediment.

Tsubouchi T, Koyama S, Mori K, Shimane Y, Usui K, Tokuda M, Tame A, Uematsu K, Maruyama T, Hatada Y.

Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3709-16. doi: 10.1099/ijs.0.067199-0. Epub 2014 Aug 8.

PMID:
25106926
17.

Alicyclobacillus cellulosilyticus sp. nov., a thermophilic, cellulolytic bacterium isolated from steamed Japanese cedar chips from a lumbermill.

Kusube M, Sugihara A, Moriwaki Y, Ueoka T, Shimane Y, Minegishi H.

Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2257-63. doi: 10.1099/ijs.0.061440-0. Epub 2014 Apr 7.

18.

Enhancing thermostability and the structural characterization of Microbacterium saccharophilum K-1 β-fructofuranosidase.

Ohta Y, Hatada Y, Hidaka Y, Shimane Y, Usui K, Ito T, Fujita K, Yokoi G, Mori M, Sato S, Miyazaki T, Nishikawa A, Tonozuka T.

Appl Microbiol Biotechnol. 2014 Aug;98(15):6667-77. doi: 10.1007/s00253-014-5645-3. Epub 2014 Mar 15.

PMID:
24633372
19.

Draft Genome Sequence of the Dimorphic Prosthecate Bacterium Brevundimonas abyssalis TAR-001T.

Tsubouchi T, Nishi S, Usui K, Shimane Y, Takaki Y, Maruyama T, Hatada Y.

Genome Announc. 2013 Oct 17;1(5). pii: e00826-13. doi: 10.1128/genomeA.00826-13.

20.

Thalassospira alkalitolerans sp. nov. and Thalassospira mesophila sp. nov., isolated from a decaying bamboo sunken in the marine environment, and emended description of the genus Thalassospira.

Tsubouchi T, Ohta Y, Haga T, Usui K, Shimane Y, Mori K, Tanizaki A, Adachi A, Kobayashi K, Yukawa K, Takagi E, Tame A, Uematsu K, Maruyama T, Hatada Y.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):107-15. doi: 10.1099/ijs.0.056028-0. Epub 2013 Sep 10.

PMID:
24021727
21.

Thermophilic and halophilic β-agarase from a halophilic archaeon Halococcus sp. 197A.

Minegishi H, Shimane Y, Echigo A, Ohta Y, Hatada Y, Kamekura M, Maruyama T, Usami R.

Extremophiles. 2013 Nov;17(6):931-9. doi: 10.1007/s00792-013-0575-z. Epub 2013 Aug 15.

22.

Halarchaeum nitratireducens sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt.

Minegishi H, Yamauchi Y, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Usami R.

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4202-6. doi: 10.1099/ijs.0.054668-0. Epub 2013 Jun 14.

PMID:
23771625
23.

Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt.

Echigo A, Minegishi H, Shimane Y, Kamekura M, Itoh T, Usami R.

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3556-62. doi: 10.1099/ijs.0.049965-0. Epub 2013 Apr 5.

PMID:
23563231
24.

Marinococcus tarijensis sp. nov., a moderately halophilic bacterium isolated from a salt mine.

Balderrama-Subieta A, Guzmán D, Minegishi H, Echigo A, Shimane Y, Hatada Y, Quillaguamán J.

Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3319-23. doi: 10.1099/ijs.0.045401-0. Epub 2013 Mar 15.

PMID:
23504966
25.

Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples.

Yamauchi Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Doukyu N, Inoue A, Usami R.

Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3143-7. doi: 10.1099/ijs.0.049262-0. Epub 2013 Feb 22.

PMID:
23435243
26.

Microbacterium saccharophilum sp. nov., isolated from a sucrose-refining factory.

Ohta Y, Ito T, Mori K, Nishi S, Shimane Y, Mikuni K, Hatada Y.

Int J Syst Evol Microbiol. 2013 Aug;63(Pt 8):2765-9. doi: 10.1099/ijs.0.047258-0. Epub 2013 Jan 11.

PMID:
23315408
27.

Salinisphaera japonica sp. nov., a moderately halophilic bacterium isolated from the surface of a deep-sea fish, Malacocottus gibber, and emended description of the genus Salinisphaera.

Shimane Y, Tsuruwaka Y, Miyazaki M, Mori K, Minegishi H, Echigo A, Ohta Y, Maruyama T, Grant WD, Hatada Y.

Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):2180-5. doi: 10.1099/ijs.0.047845-0. Epub 2012 Nov 2.

PMID:
23125319
28.

Brevundimonas abyssalis sp. nov., a dimorphic prosthecate bacterium isolated from deep-subsea floor sediment.

Tsubouchi T, Shimane Y, Usui K, Shimamura S, Mori K, Hiraki T, Tame A, Uematsu K, Maruyama T, Hatada Y.

Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):1987-94. doi: 10.1099/ijs.0.043364-0. Epub 2012 Oct 5.

PMID:
23041635
29.

Polycladomyces abyssicola gen. nov., sp. nov., a thermophilic filamentous bacterium isolated from hemipelagic sediment.

Tsubouchi T, Shimane Y, Mori K, Usui K, Hiraki T, Tame A, Uematsu K, Maruyama T, Hatada Y.

Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):1972-81. doi: 10.1099/ijs.0.043596-0. Epub 2012 Sep 28.

PMID:
23024147
30.

Loktanella cinnabarina sp. nov., isolated from a deep subseafloor sediment, and emended description of the genus Loktanella.

Tsubouchi T, Shimane Y, Mori K, Miyazaki M, Tame A, Uematsu K, Maruyama T, Hatada Y.

Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1390-5. doi: 10.1099/ijs.0.043174-0. Epub 2012 Jul 27.

PMID:
22843714
31.

Halarchaeum salinum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt.

Yamauchi Y, Minegishi H, Echigo A, Shimane Y, Shimoshige H, Kamekura M, Itoh T, Doukyu N, Inoue A, Usami R.

Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):1138-42. doi: 10.1099/ijs.0.044693-0. Epub 2012 Jun 29.

PMID:
22753525
32.

Unique substrate specificity of a thermostable glycosyl hydrolase from an uncultured Anaerolinea, derived from bacterial mat on a subsurface geothermal water stream.

Konishi M, Nishi S, Takami H, Shimane Y, Nagano Y, Mori K, Ohta Y, Hatada Y.

Biotechnol Lett. 2012 Oct;34(10):1887-93. doi: 10.1007/s10529-012-0983-7. Epub 2012 Jun 20.

PMID:
22714281
33.

Natronoarchaeum philippinense sp. nov., a haloarchaeon isolated from commercial solar salt.

Shimane Y, Nagaoka S, Minegishi H, Kamekura M, Echigo A, Hatada Y, Ito T, Usami R.

Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):920-4. doi: 10.1099/ijs.0.042549-0. Epub 2012 Jun 1.

PMID:
22659499
34.

Halobaculum magnesiiphilum sp. nov., a magnesium-dependent haloarchaeon isolated from commercial salt.

Shimoshige H, Yamada T, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Usami R.

Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):861-6. doi: 10.1099/ijs.0.037432-0. Epub 2012 May 18.

PMID:
22611203
35.

Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.

Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami R.

Int J Syst Evol Microbiol. 2012 Sep;62(Pt 9):2160-2. doi: 10.1099/ijs.0.036905-0. Epub 2011 Nov 4.

PMID:
22058320
36.

Natribacillus halophilus gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium isolated from soil.

Echigo A, Minegishi H, Shimane Y, Kamekura M, Usami R.

Int J Syst Evol Microbiol. 2012 Feb;62(Pt 2):289-94. doi: 10.1099/ijs.0.028506-0. Epub 2011 Mar 11.

PMID:
21398507
37.

Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups.

Minegishi H, Kamekura M, Kitajima-Ihara T, Nakasone K, Echigo A, Shimane Y, Usami R, Itoh T, Ihara K.

Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):188-95. doi: 10.1099/ijs.0.031708-0. Epub 2011 Mar 4.

PMID:
21378133
38.

Salarchaeum japonicum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt.

Shimane Y, Hatada Y, Minegishi H, Echigo A, Nagaoka S, Miyazaki M, Ohta Y, Maruyama T, Usami R, Grant WD, Horikoshi K.

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2266-70. doi: 10.1099/ijs.0.025064-0. Epub 2010 Oct 15.

PMID:
20952548
39.

Biochemical synthesis of novel, self-assembling glycolipids from ricinoleic acid by a recombinant α-glucosidase from Geobacillus sp.

Konishi MA, Fukuoka T, Shimane Y, Mori K, Nagano Y, Ohta Y, Kitamoto D, Hatada Y.

Biotechnol Lett. 2011 Jan;33(1):139-45. doi: 10.1007/s10529-010-0410-x. Epub 2010 Sep 29.

PMID:
20878539
40.

Halostagnicola alkaliphila sp. nov., an alkaliphilic haloarchaeon from commercial rock salt.

Nagaoka S, Minegishi H, Echigo A, Shimane Y, Kamekura M, Usami R.

Int J Syst Evol Microbiol. 2011 May;61(Pt 5):1149-52. doi: 10.1099/ijs.0.023119-0. Epub 2010 Jun 11.

PMID:
20543148
41.

Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic archaeon isolated from commercial salt.

Shimane Y, Hatada Y, Minegishi H, Mizuki T, Echigo A, Miyazaki M, Ohta Y, Usami R, Grant WD, Horikoshi K.

Int J Syst Evol Microbiol. 2010 Nov;60(Pt 11):2529-34. doi: 10.1099/ijs.0.016600-0. Epub 2009 Dec 4.

PMID:
19965994
42.

[Mutagenicity of acetaminophen on Chinese hamster V79 cells].

Shimane Y.

Shigaku. 1985 Feb;72(5):1175-87. Japanese. No abstract available.

PMID:
3921888

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