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Items: 1 to 50 of 164

1.

The P-class pentatricopeptide repeat protein PpPPR_21 is needed for accumulation of the psbI-ycf12 dicistronic mRNA in Physcomitrella chloroplasts.

Ebihara T, Matsuda T, Sugita C, Ichinose M, Yamamoto H, Shikanai T, Sugita M.

Plant J. 2018 Dec 7. doi: 10.1111/tpj.14187. [Epub ahead of print]

PMID:
30536655
2.

PGR5-Dependent Cyclic Electron Flow Protects Photosystem I under Fluctuating Light at Donor and Acceptor Sides.

Yamamoto H, Shikanai T.

Plant Physiol. 2018 Nov 21. pii: pp.01343.2018. doi: 10.1104/pp.18.01343. [Epub ahead of print]

PMID:
30464024
3.

Chloroplast nucleoids as a transformable network revealed by live imaging with a microfluidic device.

Kamimura Y, Tanaka H, Kobayashi Y, Shikanai T, Nishimura Y.

Commun Biol. 2018 May 17;1:47. doi: 10.1038/s42003-018-0055-1. eCollection 2018.

4.
5.

PROTON GRADIENT REGULATION 5 contributes to ferredoxin-dependent cyclic phosphorylation in ruptured chloroplasts.

Wang C, Takahashi H, Shikanai T.

Biochim Biophys Acta Bioenerg. 2018 Jul 31. pii: S0005-2728(18)30233-0. doi: 10.1016/j.bbabio.2018.07.011. [Epub ahead of print]

PMID:
30075115
6.

Volatile aroma components and MS-based electronic nose profiles of dogfruit (Pithecellobium jiringa) and stink bean (Parkia speciosa).

Asikin Y, Kusumiyati, Shikanai T, Wada K.

J Adv Res. 2017 Nov 14;9:79-85. doi: 10.1016/j.jare.2017.11.003. eCollection 2018 Jan.

7.

Identification of Poly-N-Acetyllactosamine-Carrying Glycoproteins from HL-60 Human Promyelocytic Leukemia Cells Using a Site-Specific Glycome Analysis Method, Glyco-RIDGE.

Togayachi A, Tomioka A, Fujita M, Sukegawa M, Noro E, Takakura D, Miyazaki M, Shikanai T, Narimatsu H, Kaji H.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1138-1152. doi: 10.1007/s13361-018-1938-6. Epub 2018 Apr 19.

8.

GGDonto ontology as a knowledge-base for genetic diseases and disorders of glycan metabolism and their causative genes.

Solovieva E, Shikanai T, Fujita N, Narimatsu H.

J Biomed Semantics. 2018 Apr 18;9(1):14. doi: 10.1186/s13326-018-0182-0.

9.

Taiwan-Japan Plant Biology 2017 Spotlight Issue: From Light Signals/Signaling to Photosynthesis and Chloroplast Development.

Nishimura K, Matsushita T, Shikanai T, Sakamoto W.

Plant Cell Physiol. 2018 Jun 1;59(6):1099-1103. doi: 10.1093/pcp/pcy077. No abstract available.

PMID:
29668987
10.

SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis.

Araki R, Mermod M, Yamasaki H, Kamiya T, Fujiwara T, Shikanai T.

J Plant Physiol. 2018 May - Jun;224-225:137-143. doi: 10.1016/j.jplph.2018.03.014. Epub 2018 Mar 29.

PMID:
29635212
11.

An evolutionarily conserved P-subfamily pentatricopeptide repeat protein is required to splice the plastid ndhA transcript in the moss Physcomitrella patens and Arabidopsis thaliana.

Ito A, Sugita C, Ichinose M, Kato Y, Yamamoto H, Shikanai T, Sugita M.

Plant J. 2018 May;94(4):638-648. doi: 10.1111/tpj.13884. Epub 2018 Apr 1.

PMID:
29505122
12.
13.

Plastid translation is essential for lateral root stem cell patterning in Arabidopsis thaliana.

Nakata MT, Sato M, Wakazaki M, Sato N, Kojima K, Sekine A, Nakamura S, Shikanai T, Toyooka K, Tsukaya H, Horiguchi G.

Biol Open. 2018 Feb 5;7(2). pii: bio028175. doi: 10.1242/bio.028175.

14.

Flavodiiron Protein Substitutes for Cyclic Electron Flow without Competing CO2 Assimilation in Rice.

Wada S, Yamamoto H, Suzuki Y, Yamori W, Shikanai T, Makino A.

Plant Physiol. 2018 Feb;176(2):1509-1518. doi: 10.1104/pp.17.01335. Epub 2017 Dec 14.

15.

NDH-PSI Supercomplex Assembly Precedes Full Assembly of the NDH Complex in Chloroplast.

Kato Y, Sugimoto K, Shikanai T.

Plant Physiol. 2018 Feb;176(2):1728-1738. doi: 10.1104/pp.17.01120. Epub 2017 Dec 4.

PMID:
29203556
16.

Holliday junction resolvases mediate chloroplast nucleoid segregation.

Kobayashi Y, Misumi O, Odahara M, Ishibashi K, Hirono M, Hidaka K, Endo M, Sugiyama H, Iwasaki H, Kuroiwa T, Shikanai T, Nishimura Y.

Science. 2017 May 12;356(6338):631-634. doi: 10.1126/science.aan0038.

PMID:
28495749
17.

Alternative electron transport mediated by flavodiiron proteins is operational in organisms from cyanobacteria up to gymnosperms.

Ilík P, Pavlovič A, Kouřil R, Alboresi A, Morosinotto T, Allahverdiyeva Y, Aro EM, Yamamoto H, Shikanai T.

New Phytol. 2017 May;214(3):967-972. doi: 10.1111/nph.14536. Epub 2017 Mar 17.

18.

Stromal Loop of Lhca6 is Responsible for the Linker Function Required for the NDH-PSI Supercomplex Formation.

Otani T, Yamamoto H, Shikanai T.

Plant Cell Physiol. 2017 Apr 1;58(4):851-861. doi: 10.1093/pcp/pcx009.

PMID:
28184910
19.

Fine-tuned regulation of the K+ /H+ antiporter KEA3 is required to optimize photosynthesis during induction.

Wang C, Yamamoto H, Narumiya F, Munekage YN, Finazzi G, Szabo I, Shikanai T.

Plant J. 2017 Feb;89(3):540-553. doi: 10.1111/tpj.13405. Epub 2017 Feb 3.

20.

Composition, Taste, Aroma, and Antioxidant Activity of Solidified Noncentrifugal Brown Sugars Prepared from Whole Stalk and Separated Pith of Sugarcane (Saccharum officinarum L.).

Takahashi M, Ishmael M, Asikin Y, Hirose N, Mizu M, Shikanai T, Tamaki H, Wada K.

J Food Sci. 2016 Nov;81(11):C2647-C2655. doi: 10.1111/1750-3841.13531. Epub 2016 Oct 25.

PMID:
27780296
21.

Dynamic Interplay between Nucleoid Segregation and Genome Integrity in Chlamydomonas Chloroplasts.

Odahara M, Kobayashi Y, Shikanai T, Nishimura Y.

Plant Physiol. 2016 Dec;172(4):2337-2346. Epub 2016 Oct 17.

22.

Grana-Localized Proteins, RIQ1 and RIQ2, Affect the Organization of Light-Harvesting Complex II and Grana Stacking in Arabidopsis.

Yokoyama R, Yamamoto H, Kondo M, Takeda S, Ifuku K, Fukao Y, Kamei Y, Nishimura M, Shikanai T.

Plant Cell. 2016 Sep;28(9):2261-2275. doi: 10.1105/tpc.16.00296. Epub 2016 Sep 6.

23.

Contribution of Cyclic and Pseudo-cyclic Electron Transport to the Formation of Proton Motive Force in Chloroplasts.

Shikanai T, Yamamoto H.

Mol Plant. 2017 Jan 9;10(1):20-29. doi: 10.1016/j.molp.2016.08.004. Epub 2016 Aug 26. Review.

24.

CHLORORESPIRATORY REDUCTION 9 is a Novel Factor Required for Formation of Subcomplex A of the Chloroplast NADH Dehydrogenase-Like Complex.

Yamamoto H, Fan X, Sugimoto K, Fukao Y, Peng L, Shikanai T.

Plant Cell Physiol. 2016 Oct;57(10):2122-2132. Epub 2016 Aug 1.

PMID:
27481895
25.

Artificial remodelling of alternative electron flow by flavodiiron proteins in Arabidopsis.

Yamamoto H, Takahashi S, Badger MR, Shikanai T.

Nat Plants. 2016 Feb 22;2:16012. doi: 10.1038/nplants.2016.12.

PMID:
27249347
26.

C-Terminal Region of Sulfite Reductase Is Important to Localize to Chloroplast Nucleoids in Land Plants.

Kobayashi Y, Otani T, Ishibashi K, Shikanai T, Nishimura Y.

Genome Biol Evol. 2016 May 22;8(5):1459-66. doi: 10.1093/gbe/evw093.

27.

The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis.

Fujii S, Suzuki T, Giegé P, Higashiyama T, Koizuka N, Shikanai T.

Plant J. 2016 Jun;86(6):504-13. doi: 10.1111/tpj.13185.

28.

Physiological Functions of Cyclic Electron Transport Around Photosystem I in Sustaining Photosynthesis and Plant Growth.

Yamori W, Shikanai T.

Annu Rev Plant Biol. 2016 Apr 29;67:81-106. doi: 10.1146/annurev-arplant-043015-112002. Epub 2016 Feb 24. Review.

PMID:
26927905
29.

Regulatory network of proton motive force: contribution of cyclic electron transport around photosystem I.

Shikanai T.

Photosynth Res. 2016 Sep;129(3):253-60. doi: 10.1007/s11120-016-0227-0. Epub 2016 Feb 8. Review.

PMID:
26858094
30.
31.

Decreased Expression of a Gene Caused by a T-DNA Insertion in an Adjacent Gene in Arabidopsis.

Tamura K, Kawabayashi T, Shikanai T, Hara-Nishimura I.

PLoS One. 2016 Feb 1;11(2):e0147911. doi: 10.1371/journal.pone.0147911. eCollection 2016.

32.

NDH-1 and NDH-2 Plastoquinone Reductases in Oxygenic Photosynthesis.

Peltier G, Aro EM, Shikanai T.

Annu Rev Plant Biol. 2016 Apr 29;67:55-80. doi: 10.1146/annurev-arplant-043014-114752. Epub 2015 Dec 21. Review.

PMID:
26735062
33.

A Cyan Fluorescent Reporter Expressed from the Chloroplast Genome of Marchantia polymorpha.

Boehm CR, Ueda M, Nishimura Y, Shikanai T, Haseloff J.

Plant Cell Physiol. 2016 Feb;57(2):291-9. doi: 10.1093/pcp/pcv160. Epub 2015 Dec 3.

34.

Eukaryotic Components Remodeled Chloroplast Nucleoid Organization during the Green Plant Evolution.

Kobayashi Y, Takusagawa M, Harada N, Fukao Y, Yamaoka S, Kohchi T, Hori K, Ohta H, Shikanai T, Nishimura Y.

Genome Biol Evol. 2015 Nov 25;8(1):1-16. doi: 10.1093/gbe/evv233.

35.

Chloroplast NDH: A different enzyme with a structure similar to that of respiratory NADH dehydrogenase.

Shikanai T.

Biochim Biophys Acta. 2016 Jul;1857(7):1015-22. doi: 10.1016/j.bbabio.2015.10.013. Epub 2015 Oct 28. Review.

36.
37.

GlyTouCan 1.0--The international glycan structure repository.

Aoki-Kinoshita K, Agravat S, Aoki NP, Arpinar S, Cummings RD, Fujita A, Fujita N, Hart GM, Haslam SM, Kawasaki T, Matsubara M, Moreman KW, Okuda S, Pierce M, Ranzinger R, Shikanai T, Shinmachi D, Solovieva E, Suzuki Y, Tsuchiya S, Yamada I, York WS, Zaia J, Narimatsu H.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1237-42. doi: 10.1093/nar/gkv1041. Epub 2015 Oct 17.

38.

Development of Gateway Binary Vector Series with Four Different Selection Markers for the Liverwort Marchantia polymorpha.

Ishizaki K, Nishihama R, Ueda M, Inoue K, Ishida S, Nishimura Y, Shikanai T, Kohchi T.

PLoS One. 2015 Sep 25;10(9):e0138876. doi: 10.1371/journal.pone.0138876. eCollection 2015.

39.
40.

JCGGDB: Japan Consortium for Glycobiology and Glycotechnology Database.

Maeda M, Fujita N, Suzuki Y, Sawaki H, Shikanai T, Narimatsu H.

Methods Mol Biol. 2015;1273:161-79. doi: 10.1007/978-1-4939-2343-4_12.

PMID:
25753710
41.

RNA editing in plants: Machinery and flexibility of site recognition.

Shikanai T.

Biochim Biophys Acta. 2015 Sep;1847(9):779-85. doi: 10.1016/j.bbabio.2014.12.010. Epub 2015 Jan 10. Review.

42.

The Lectin Frontier Database (LfDB), and data generation based on frontal affinity chromatography.

Hirabayashi J, Tateno H, Shikanai T, Aoki-Kinoshita KF, Narimatsu H.

Molecules. 2015 Jan 8;20(1):951-73. doi: 10.3390/molecules20010951. Review.

43.

Role of cyclic electron transport around photosystem I in regulating proton motive force.

Wang C, Yamamoto H, Shikanai T.

Biochim Biophys Acta. 2015 Sep;1847(9):931-8. doi: 10.1016/j.bbabio.2014.11.013. Epub 2014 Dec 4.

44.

GlycoRDF: an ontology to standardize glycomics data in RDF.

Ranzinger R, Aoki-Kinoshita KF, Campbell MP, Kawano S, Lütteke T, Okuda S, Shinmachi D, Shikanai T, Sawaki H, Toukach P, Matsubara M, Yamada I, Narimatsu H.

Bioinformatics. 2015 Mar 15;31(6):919-25. doi: 10.1093/bioinformatics/btu732. Epub 2014 Nov 11.

45.

Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing.

Okuda K, Shoki H, Arai M, Shikanai T, Small I, Nakamura T.

Plant J. 2014 Dec;80(5):870-82. doi: 10.1111/tpj.12687. Epub 2014 Nov 6.

46.

RNAi screening of human glycogene orthologs in the nematode Caenorhabditis elegans and the construction of the C. elegans glycogene database.

Akiyoshi S, Nomura KH, Dejima K, Murata D, Matsuda A, Kanaki N, Takaki T, Mihara H, Nagaishi T, Furukawa S, Ando KG, Yoshina S, Mitani S, Togayachi A, Suzuki Y, Shikanai T, Narimatsu H, Nomura K.

Glycobiology. 2015 Jan;25(1):8-20. doi: 10.1093/glycob/cwu080. Epub 2014 Aug 4.

47.

WURCS: the Web3 unique representation of carbohydrate structures.

Tanaka K, Aoki-Kinoshita KF, Kotera M, Sawaki H, Tsuchiya S, Fujita N, Shikanai T, Kato M, Kawano S, Yamada I, Narimatsu H.

J Chem Inf Model. 2014 Jun 23;54(6):1558-66. doi: 10.1021/ci400571e. Epub 2014 Jun 4.

PMID:
24897372
48.

Central role of cyclic electron transport around photosystem I in the regulation of photosynthesis.

Shikanai T.

Curr Opin Biotechnol. 2014 Apr;26:25-30. doi: 10.1016/j.copbio.2013.08.012. Epub 2013 Sep 21. Review.

PMID:
24679254
49.

chlB requirement for chlorophyll biosynthesis under short photoperiod in Marchantia polymorpha L.

Ueda M, Tanaka A, Sugimoto K, Shikanai T, Nishimura Y.

Genome Biol Evol. 2014 Mar;6(3):620-8. doi: 10.1093/gbe/evu045.

50.

Introducing glycomics data into the Semantic Web.

Aoki-Kinoshita KF, Bolleman J, Campbell MP, Kawano S, Kim JD, Lütteke T, Matsubara M, Okuda S, Ranzinger R, Sawaki H, Shikanai T, Shinmachi D, Suzuki Y, Toukach P, Yamada I, Packer NH, Narimatsu H.

J Biomed Semantics. 2013 Nov 26;4(1):39. doi: 10.1186/2041-1480-4-39.

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