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Items: 40


Robust Characterization of Two Distinct Glutarate Sensing Transcription Factors of Pseudomonas putida l-Lysine Metabolism.

Thompson MG, Costello Z, Hummel NFC, Cruz-Morales P, Blake-Hedges JM, Krishna RN, Skyrud W, Pearson AN, Incha MR, Shih PM, Garcia-Martin H, Keasling JD.

ACS Synth Biol. 2019 Oct 18;8(10):2385-2396. doi: 10.1021/acssynbio.9b00255. Epub 2019 Sep 25.


Early Cyanobacteria and the Innovation of Microbial Sunscreens.

Shih PM.

MBio. 2019 Jun 11;10(3). pii: e01262-19. doi: 10.1128/mBio.01262-19.


Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Mar 26;10(1):1451. doi: 10.1038/s41467-019-09423-3.


The evolution and productivity of carbon fixation pathways in response to changes in oxygen concentration over geological time.

Ward LM, Shih PM.

Free Radic Biol Med. 2019 Aug 20;140:188-199. doi: 10.1016/j.freeradbiomed.2019.01.049. Epub 2019 Feb 18. Review.


Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Jan 28;10(1):463. doi: 10.1038/s41467-018-08246-y. Erratum in: Nat Commun. 2019 Mar 26;10(1):1451.


Bacterial diversification through geological time.

Louca S, Shih PM, Pennell MW, Fischer WW, Parfrey LW, Doebeli M.

Nat Ecol Evol. 2018 Sep;2(9):1458-1467. doi: 10.1038/s41559-018-0625-0. Epub 2018 Jul 30.


Increased drought tolerance in plants engineered for low lignin and low xylan content.

Yan J, Aznar A, Chalvin C, Birdseye DS, Baidoo EEK, Eudes A, Shih PM, Loqué D, Zhang A, Scheller HV.

Biotechnol Biofuels. 2018 Jul 18;11:195. doi: 10.1186/s13068-018-1196-7. eCollection 2018.


MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes.

Ward LM, Shih PM, Fischer WW.

Bioinformatics. 2018 Dec 15;34(24):4284-4286. doi: 10.1093/bioinformatics/bty510.


Towards a sustainable bio-based economy: Redirecting primary metabolism to new products with plant synthetic biology.

Shih PM.

Plant Sci. 2018 Aug;273:84-91. doi: 10.1016/j.plantsci.2018.03.012. Epub 2018 Mar 14. Review.


Recognition of supraduodenal artery from hepatic artery is essential to avoid untoward complications at HAIC: two cases.

Ou TH, Wu DK, Shih PM, Chao MF.

BMJ Case Rep. 2018 Apr 19;2018. pii: bcr-2017-223627. doi: 10.1136/bcr-2017-223627. No abstract available.


Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer.

Ward LM, Hemp J, Shih PM, McGlynn SE, Fischer WW.

Front Microbiol. 2018 Feb 19;9:260. doi: 10.3389/fmicb.2018.00260. eCollection 2018.


Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass.

Aznar A, Chalvin C, Shih PM, Maimann M, Ebert B, Birdseye DS, Loqué D, Scheller HV.

Biotechnol Biofuels. 2018 Jan 9;11:2. doi: 10.1186/s13068-017-1007-6. eCollection 2018.


Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi.

Shih PM, Ward LM, Fischer WW.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10749-10754. doi: 10.1073/pnas.1710798114. Epub 2017 Sep 18.


A robust gene-stacking method utilizing yeast assembly for plant synthetic biology.

Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D.

Nat Commun. 2016 Oct 26;7:13215. doi: 10.1038/ncomms13215.


Crown group Oxyphotobacteria postdate the rise of oxygen.

Shih PM, Hemp J, Ward LM, Matzke NJ, Fischer WW.

Geobiology. 2017 Jan;15(1):19-29. doi: 10.1111/gbi.12200. Epub 2016 Jul 8.


Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops.

Shih PM, Liang Y, Loqué D.

Plant J. 2016 Jul;87(1):103-17. doi: 10.1111/tpj.13176. Epub 2016 Jun 20. Review.


Biochemical characterization of predicted Precambrian RuBisCO.

Shih PM, Occhialini A, Cameron JC, Andralojc PJ, Parry MA, Kerfeld CA.

Nat Commun. 2016 Jan 21;7:10382. doi: 10.1038/ncomms10382.


Photosynthesis and early Earth.

Shih PM.

Curr Biol. 2015 Oct 5;25(19):R855-9. doi: 10.1016/j.cub.2015.04.046.


Noncontrast computed tomography factors that predict the renal stone outcome after shock wave lithotripsy.

Lee HY, Yang YH, Lee YL, Shen JT, Jang MY, Shih PM, Wu WJ, Chou YH, Juan YS.

Clin Imaging. 2015 Sep-Oct;39(5):845-50. doi: 10.1016/j.clinimag.2015.04.010. Epub 2015 Apr 25.


Random-Coil Behavior of Chemically Denatured Topologically Knotted Proteins Revealed by Small-Angle X-ray Scattering.

Shih PM, Wang I, Lee YT, Hsieh SJ, Chen SY, Wang LW, Huang CT, Chien CT, Chang CY, Hsu ST.

J Phys Chem B. 2015 Apr 30;119(17):5437-43. doi: 10.1021/acs.jpcb.5b01984. Epub 2015 Apr 21.


Cyanobacterial evolution: fresh insight into ancient questions.

Shih PM.

Curr Biol. 2015 Mar 2;25(5):R192-3. doi: 10.1016/j.cub.2014.12.046.


Noncontrast computed tomography can predict the outcome of shockwave lithotripsy via accurate stone measurement and abdominal fat distribution determination.

Geng JH, Tu HP, Shih PM, Shen JT, Jang MY, Wu WJ, Li CC, Chou YH, Juan YS.

Kaohsiung J Med Sci. 2015 Jan;31(1):34-41. doi: 10.1016/j.kjms.2014.10.001. Epub 2014 Nov 6.


Introduction of a synthetic CO₂-fixing photorespiratory bypass into a cyanobacterium.

Shih PM, Zarzycki J, Niyogi KK, Kerfeld CA.

J Biol Chem. 2014 Apr 4;289(14):9493-500. doi: 10.1074/jbc.C113.543132. Epub 2014 Feb 20.


Bayesian analysis of congruence of core genes in Prochlorococcus and Synechococcus and implications on horizontal gene transfer.

Matzke NJ, Shih PM, Kerfeld CA.

PLoS One. 2014 Jan 21;9(1):e85103. doi: 10.1371/journal.pone.0085103. eCollection 2014.


Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins.

Shih PM, Matzke NJ.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12355-60. doi: 10.1073/pnas.1305813110. Epub 2013 Jun 17.


Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust.

Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A.

ISME J. 2013 Nov;7(11):2178-91. doi: 10.1038/ismej.2013.83. Epub 2013 Jun 6.


Fluorescence amplified detection of proteases by the catalytic activation of a semisynthetic sensor.

Shih PM, Liu TK, Tan KT.

Chem Commun (Camb). 2013 Jul 14;49(55):6212-4. doi: 10.1039/c3cc42791a.


Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.

Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, Calteau A, Cai F, Tandeau de Marsac N, Rippka R, Herdman M, Sivonen K, Coursin T, Laurent T, Goodwin L, Nolan M, Davenport KW, Han CS, Rubin EM, Eisen JA, Woyke T, Gugger M, Kerfeld CA.

Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):1053-8. doi: 10.1073/pnas.1217107110. Epub 2012 Dec 31.


Risk factors survey for extracorporeal shockwave lithotripsy-induced renal hematoma.

Lee HY, Yang YH, Shen JT, Jang MY, Shih PM, Wu WJ, Huang CH, Chou YH, Juan YS.

J Endourol. 2013 Jun;27(6):763-7. doi: 10.1089/end.2012.0619. Epub 2013 Mar 7.


Abdominal fat distribution on computed tomography predicts ureteric calculus fragmentation by shock wave lithotripsy.

Juan HC, Lin HY, Chou YH, Yang YH, Shih PM, Chuang SM, Shen JT, Juan YS.

Eur Radiol. 2012 Aug;22(8):1624-30. doi: 10.1007/s00330-012-2413-6. Epub 2012 Mar 14.


Association structures of ionic liquid∕DMSO mixtures studied by high-pressure infrared spectroscopy.

Jiang JC, Lin KH, Li SC, Shih PM, Hung KC, Lin SH, Chang HC.

J Chem Phys. 2011 Jan 28;134(4):044506. doi: 10.1063/1.3526485.


A high-pressure infrared spectroscopic study on the interaction of ionic liquids with PEO-PPO-PEO block copolymers and 1,4-dioxane.

Jiang JC, Li SC, Shih PM, Hung TC, Chang SC, Lin SH, Chang HC.

J Phys Chem B. 2011 Feb 10;115(5):883-8. doi: 10.1021/jp109600c. Epub 2010 Dec 29.


Excited-state properties of the 16kDa red carotenoid protein from Arthrospira maxima.

Chábera P, Durchan M, Shih PM, Kerfeld CA, Polívka T.

Biochim Biophys Acta. 2011 Jan;1807(1):30-5. doi: 10.1016/j.bbabio.2010.08.013. Epub 2010 Sep 8.


Relapsed acute pancreatitis as the initial presentation of pancreatic cancer in a young man: a case report.

Tsai MJ, Liao KS, Shih PM, Lee KT, Chuang WL, Chiu YJ, Lin ZY.

Kaohsiung J Med Sci. 2010 Aug;26(8):448-55. doi: 10.1016/S1607-551X(10)70072-3.


Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport.

Jung HS, Okegawa Y, Shih PM, Kellogg E, Abdel-Ghany SE, Pilon M, Sjölander K, Shikanai T, Niyogi KK.

PLoS One. 2010 Jul 21;5(7):e11688. doi: 10.1371/journal.pone.0011688.


Biloma following transcatheter arterial chemoembolization with microspheres: a case report.

Huang CK, Chen SC, Shih PM, Chuang WL.

Kaohsiung J Med Sci. 2007 Sep;23(9):470-4.


Successful thrombolytic therapy for bilateral renal infarction: a case report.

Lin HC, Shih PM, Chang TH, Ke HL, Wu WJ, Huang CH.

Kaohsiung J Med Sci. 2006 Aug;22(8):410-4.


Supraumbilical skin rash and fat necrosis after transcatheter arterial chemoembolization: a case report.

Lin CC, Wu DK, Shih PM, Liu GC, Chuang WL.

Kaohsiung J Med Sci. 2004 Jan;20(1):36-40. Review.

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