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Items: 1 to 50 of 135

1.

The RopGEF KARAPPO Is Essential for the Initiation of Vegetative Reproduction in Marchantia polymorpha.

Hiwatashi T, Goh H, Yasui Y, Koh LQ, Takami H, Kajikawa M, Kirita H, Kanazawa T, Minamino N, Togawa T, Sato M, Wakazaki M, Yamaguchi K, Shigenobu S, Fukaki H, Mimura T, Toyooka K, Sawa S, Yamato KT, Ueda T, Urano D, Kohchi T, Ishizaki K.

Curr Biol. 2019 Oct 21;29(20):3525-3531.e7. doi: 10.1016/j.cub.2019.08.071. Epub 2019 Oct 10.

PMID:
31607537
2.

CTENO64 Is Required for Coordinated Paddling of Ciliary Comb Plate in Ctenophores.

Jokura K, Shibata D, Yamaguchi K, Shiba K, Makino Y, Shigenobu S, Inaba K.

Curr Biol. 2019 Oct 21;29(20):3510-3516.e4. doi: 10.1016/j.cub.2019.08.059. Epub 2019 Oct 10.

PMID:
31607532
3.

Comparative analysis demonstrates cell type-specific conservation of SOX9 targets between mouse and chicken.

Yamashita S, Kataoka K, Yamamoto H, Kato T, Hara S, Yamaguchi K, Renard-Guillet C, Katou Y, Shirahige K, Ochi H, Ogino H, Uchida T, Inui M, Takada S, Shigenobu S, Asahara H.

Sci Rep. 2019 Aug 29;9(1):12560. doi: 10.1038/s41598-019-48979-4.

4.

RNA-Seq Analysis Reveals Genes Related to Photoreception, Nutrient Uptake, and Toxicity in a Noxious Red-Tide Raphidophyte Chattonella antiqua.

Shikata T, Takahashi F, Nishide H, Shigenobu S, Kamei Y, Sakamoto S, Yuasa K, Nishiyama Y, Yamasaki Y, Uchiyama I.

Front Microbiol. 2019 Jul 31;10:1764. doi: 10.3389/fmicb.2019.01764. eCollection 2019.

5.

Author Correction: Transcriptomic analysis reveals differences in the regulation of amino acid metabolism in asexual and sexual planarians.

Sekii K, Yorimoto S, Okamoto H, Nagao N, Maezawa T, Matsui Y, Yamaguchi K, Furukawa R, Shigenobu S, Kobayashi K.

Sci Rep. 2019 Aug 8;9(1):11799. doi: 10.1038/s41598-019-48084-6.

6.

Physcomitrella STEMIN transcription factor induces stem cell formation with epigenetic reprogramming.

Ishikawa M, Morishita M, Higuchi Y, Ichikawa S, Ishikawa T, Nishiyama T, Kabeya Y, Hiwatashi Y, Kurata T, Kubo M, Shigenobu S, Tamada Y, Sato Y, Hasebe M.

Nat Plants. 2019 Jul;5(7):681-690. doi: 10.1038/s41477-019-0464-2. Epub 2019 Jul 8.

PMID:
31285563
7.

Duplication and soldier-specific expression of geranylgeranyl diphosphate synthase genes in a nasute termite Nasutitermes takasagoensis.

Hojo M, Shigenobu S, Maekawa K, Miura T, Tokuda G.

Insect Biochem Mol Biol. 2019 Aug;111:103177. doi: 10.1016/j.ibmb.2019.103177. Epub 2019 Jun 20.

PMID:
31228516
8.

Global Shifts in Gene Expression Profiles Accompanied with Environmental Changes in Cnidarian-Dinoflagellate Endosymbiosis.

Ishii Y, Maruyama S, Takahashi H, Aihara Y, Yamaguchi T, Yamaguchi K, Shigenobu S, Kawata M, Ueno N, Minagawa J.

G3 (Bethesda). 2019 Jul 9;9(7):2337-2347. doi: 10.1534/g3.118.201012.

9.

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology.

Matsunami M, Suzuki M, Haramoto Y, Fukui A, Inoue T, Yamaguchi K, Uchiyama I, Mori K, Tashiro K, Ito Y, Takeuchi T, Suzuki KT, Agata K, Shigenobu S, Hayashi T.

DNA Res. 2019 Jun 1;26(3):217-229. doi: 10.1093/dnares/dsz003.

10.

Transcriptomic analysis reveals differences in the regulation of amino acid metabolism in asexual and sexual planarians.

Sekii K, Yorimoto S, Okamoto H, Nagao N, Maezawa T, Matsui Y, Yamaguchi K, Furukawa R, Shigenobu S, Kobayashi K.

Sci Rep. 2019 Apr 16;9(1):6132. doi: 10.1038/s41598-019-42025-z. Erratum in: Sci Rep. 2019 Aug 8;9(1):11799.

11.

Exaggeration and cooption of innate immunity for social defense.

Kutsukake M, Moriyama M, Shigenobu S, Meng XY, Nikoh N, Noda C, Kobayashi S, Fukatsu T.

Proc Natl Acad Sci U S A. 2019 Apr 30;116(18):8950-8959. doi: 10.1073/pnas.1900917116. Epub 2019 Apr 15.

12.

Precise staging of beetle horn formation in Trypoxylus dichotomus reveals the pleiotropic roles of doublesex depending on the spatiotemporal developmental contexts.

Morita S, Ando T, Maeno A, Mizutani T, Mase M, Shigenobu S, Niimi T.

PLoS Genet. 2019 Apr 10;15(4):e1008063. doi: 10.1371/journal.pgen.1008063. eCollection 2019 Apr.

13.

Transcriptomic changes during caste development through social interactions in the termite Zootermopsis nevadensis.

Yaguchi H, Suzuki R, Matsunami M, Shigenobu S, Maekawa K.

Ecol Evol. 2019 Feb 23;9(6):3446-3456. doi: 10.1002/ece3.4976. eCollection 2019 Mar.

14.

Antimicrobial Activities of Cysteine-rich Peptides Specific to Bacteriocytes of the Pea Aphid Acyrthosiphon pisum.

Uchi N, Fukudome M, Nozaki N, Suzuki M, Osuki KI, Shigenobu S, Uchiumi T.

Microbes Environ. 2019 Jun 27;34(2):155-160. doi: 10.1264/jsme2.ME18148. Epub 2019 Mar 21.

15.

Termite soldier mandibles are elongated by dachshund under hormonal and Hox gene controls.

Sugime Y, Oguchi K, Gotoh H, Hayashi Y, Matsunami M, Shigenobu S, Koshikawa S, Miura T.

Development. 2019 Mar 4;146(5). pii: dev171942. doi: 10.1242/dev.171942.

16.

A draft genome assembly of the solar-powered sea slug Elysia chlorotica.

Cai H, Li Q, Fang X, Li J, Curtis NE, Altenburger A, Shibata T, Feng M, Maeda T, Schwartz JA, Shigenobu S, Lundholm N, Nishiyama T, Yang H, Hasebe M, Li S, Pierce SK, Wang J.

Sci Data. 2019 Feb 19;6:190022. doi: 10.1038/sdata.2019.22.

17.

Molecular Basis of White Adipose Tissue Remodeling That Precedes and Coincides With Hibernation in the Syrian Hamster, a Food-Storing Hibernator.

Chayama Y, Ando L, Sato Y, Shigenobu S, Anegawa D, Fujimoto T, Taii H, Tamura Y, Miura M, Yamaguchi Y.

Front Physiol. 2019 Jan 28;9:1973. doi: 10.3389/fphys.2018.01973. eCollection 2018.

18.

Comparative cytology, physiology and transcriptomics of Burkholderia insecticola in symbiosis with the bean bug Riptortus pedestris and in culture.

Ohbayashi T, Futahashi R, Terashima M, Barrière Q, Lamouche F, Takeshita K, Meng XY, Mitani Y, Sone T, Shigenobu S, Fukatsu T, Mergaert P, Kikuchi Y.

ISME J. 2019 Jun;13(6):1469-1483. doi: 10.1038/s41396-019-0361-8. Epub 2019 Feb 11.

PMID:
30742016
19.

A novel splicing variant of small nucleolar RNA host gene 4 is a podocyte-selective non-coding RNA upregulated in response to puromycin aminonucleoside-induced podocyte injury.

Horikawa A, Yoneda T, Yaoita E, Yamaguchi K, Shigenobu S, Kuramochi M, Yamate J, Inui T, Ishibashi O.

J Biochem. 2019 May 1;165(5):447-454. doi: 10.1093/jb/mvy118.

PMID:
30597036
20.

Nonsense mutation in PMEL is associated with yellowish plumage colour phenotype in Japanese quail.

Ishishita S, Takahashi M, Yamaguchi K, Kinoshita K, Nakano M, Nunome M, Kitahara S, Tatsumoto S, Go Y, Shigenobu S, Matsuda Y.

Sci Rep. 2018 Nov 13;8(1):16732. doi: 10.1038/s41598-018-34827-4.

21.

Novel components of germline sex determination acting downstream of foxl3 in medaka.

Kikuchi M, Nishimura T, Saito D, Shigenobu S, Takada R, Gutierrez-Triana JA, Cerdán JLM, Takada S, Wittbrodt J, Suyama M, Tanaka M.

Dev Biol. 2019 Jan 1;445(1):80-89. doi: 10.1016/j.ydbio.2018.10.019. Epub 2018 Oct 27.

PMID:
30392839
22.

Firefly genomes illuminate parallel origins of bioluminescence in beetles.

Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK.

Elife. 2018 Oct 16;7. pii: e36495. doi: 10.7554/eLife.36495.

23.

Rhinoceros beetle horn development reveals deep parallels with dung beetles.

Ohde T, Morita S, Shigenobu S, Morita J, Mizutani T, Gotoh H, Zinna RA, Nakata M, Ito Y, Wada K, Kitano Y, Yuzaki K, Toga K, Mase M, Kadota K, Rushe J, Lavine LC, Emlen DJ, Niimi T.

PLoS Genet. 2018 Oct 4;14(10):e1007651. doi: 10.1371/journal.pgen.1007651. eCollection 2018 Oct.

24.

Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis.

Maeda T, Kobayashi Y, Kameoka H, Okuma N, Takeda N, Yamaguchi K, Bino T, Shigenobu S, Kawaguchi M.

Commun Biol. 2018 Jul 10;1:87. doi: 10.1038/s42003-018-0094-7. eCollection 2018.

25.

Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.

Ando T, Matsuda T, Goto K, Hara K, Ito A, Hirata J, Yatomi J, Kajitani R, Okuno M, Yamaguchi K, Kobayashi M, Takano T, Minakuchi Y, Seki M, Suzuki Y, Yano K, Itoh T, Shigenobu S, Toyoda A, Niimi T.

Nat Commun. 2018 Sep 21;9(1):3843. doi: 10.1038/s41467-018-06116-1.

26.

Cas9 ribonucleoprotein complex allows direct and rapid analysis of coding and noncoding regions of target genes in Pleurodeles waltl development and regeneration.

Suzuki M, Hayashi T, Inoue T, Agata K, Hirayama M, Suzuki M, Shigenobu S, Takeuchi T, Yamamoto T, Suzuki KT.

Dev Biol. 2018 Nov 15;443(2):127-136. doi: 10.1016/j.ydbio.2018.09.008. Epub 2018 Sep 10.

27.

Caste-specific microRNA expression in termites: insights into soldier differentiation.

Matsunami M, Nozawa M, Suzuki R, Toga K, Masuoka Y, Yamaguchi K, Maekawa K, Shigenobu S, Miura T.

Insect Mol Biol. 2019 Feb;28(1):86-98. doi: 10.1111/imb.12530. Epub 2018 Oct 16.

PMID:
30126008
28.

Functional divergence of a heterochromatin-binding protein during stickleback speciation.

Yoshida K, Ishikawa A, Toyoda A, Shigenobu S, Fujiyama A, Kitano J.

Mol Ecol. 2019 Mar;28(6):1563-1578. doi: 10.1111/mec.14841. Epub 2018 Sep 7.

PMID:
30117211
29.

A lipocalin protein, Neural Lazarillo, is key to social interactions that promote termite soldier differentiation.

Yaguchi H, Shigenobu S, Hayashi Y, Miyazaki S, Toga K, Masuoka Y, Maekawa K.

Proc Biol Sci. 2018 Jul 25;285(1883). pii: 20180707. doi: 10.1098/rspb.2018.0707.

30.

High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O.

Sato K, Kadota Y, Gan P, Bino T, Uehara T, Yamaguchi K, Ichihashi Y, Maki N, Iwahori H, Suzuki T, Shigenobu S, Shirasu K.

Genome Announc. 2018 Jun 28;6(26). pii: e00519-18. doi: 10.1128/genomeA.00519-18.

31.

The genome of Rhizophagus clarus HR1 reveals a common genetic basis for auxotrophy among arbuscular mycorrhizal fungi.

Kobayashi Y, Maeda T, Yamaguchi K, Kameoka H, Tanaka S, Ezawa T, Shigenobu S, Kawaguchi M.

BMC Genomics. 2018 Jun 18;19(1):465. doi: 10.1186/s12864-018-4853-0.

32.

Human-specific features of spatial gene expression and regulation in eight brain regions.

Xu C, Li Q, Efimova O, He L, Tatsumoto S, Stepanova V, Oishi T, Udono T, Yamaguchi K, Shigenobu S, Kakita A, Nawa H, Khaitovich P, Go Y.

Genome Res. 2018 Aug;28(8):1097-1110. doi: 10.1101/gr.231357.117. Epub 2018 Jun 13.

33.

Genomic Insight into Symbiosis-Induced Insect Color Change by a Facultative Bacterial Endosymbiont, "Candidatus Rickettsiella viridis".

Nikoh N, Tsuchida T, Maeda T, Yamaguchi K, Shigenobu S, Koga R, Fukatsu T.

MBio. 2018 Jun 12;9(3). pii: e00890-18. doi: 10.1128/mBio.00890-18.

34.

Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches.

Kinjo Y, Bourguignon T, Tong KJ, Kuwahara H, Lim SJ, Yoon KB, Shigenobu S, Park YC, Nalepa CA, Hongoh Y, Ohkuma M, Lo N, Tokuda G.

Genome Biol Evol. 2018 Jun 1;10(6):1622-1630. doi: 10.1093/gbe/evy110.

35.

The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression.

Ravinet M, Yoshida K, Shigenobu S, Toyoda A, Fujiyama A, Kitano J.

PLoS Genet. 2018 May 23;14(5):e1007358. doi: 10.1371/journal.pgen.1007358. eCollection 2018 May.

36.

The Mycoheterotrophic Symbiosis Between Orchids and Mycorrhizal Fungi Possesses Major Components Shared with Mutualistic Plant-Mycorrhizal Symbioses.

Miura C, Yamaguchi K, Miyahara R, Yamamoto T, Fuji M, Yagame T, Imaizumi-Anraku H, Yamato M, Shigenobu S, Kaminaka H.

Mol Plant Microbe Interact. 2018 Oct;31(10):1032-1047. doi: 10.1094/MPMI-01-18-0029-R. Epub 2018 Aug 22.

PMID:
29649962
37.

TGFβ signaling related genes are involved in hormonal mediation during termite soldier differentiation.

Masuoka Y, Yaguchi H, Toga K, Shigenobu S, Maekawa K.

PLoS Genet. 2018 Apr 11;14(4):e1007338. doi: 10.1371/journal.pgen.1007338. eCollection 2018 Apr.

38.

Generative Cell Specification Requires Transcription Factors Evolutionarily Conserved in Land Plants.

Yamaoka S, Nishihama R, Yoshitake Y, Ishida S, Inoue K, Saito M, Okahashi K, Bao H, Nishida H, Yamaguchi K, Shigenobu S, Ishizaki K, Yamato KT, Kohchi T.

Curr Biol. 2018 Feb 5;28(3):479-486.e5. doi: 10.1016/j.cub.2017.12.053. Epub 2018 Jan 25.

39.

Physcomitrella MADS-box genes regulate water supply and sperm movement for fertilization.

Koshimizu S, Kofuji R, Sasaki-Sekimoto Y, Kikkawa M, Shimojima M, Ohta H, Shigenobu S, Kabeya Y, Hiwatashi Y, Tamada Y, Murata T, Hasebe M.

Nat Plants. 2018 Jan;4(1):36-45. doi: 10.1038/s41477-017-0082-9. Epub 2018 Jan 3.

PMID:
29296005
40.

Transcriptome characterization of male accessory glands in ants to identify molecules involved in their reproductive success.

Gotoh A, Shigenobu S, Yamaguchi K, Kobayashi S, Ito F, Tsuji K.

Insect Mol Biol. 2018 Apr;27(2):212-220. doi: 10.1111/imb.12364. Epub 2017 Dec 11.

PMID:
29226989
41.

RNG105/caprin1, an RNA granule protein for dendritic mRNA localization, is essential for long-term memory formation.

Nakayama K, Ohashi R, Shinoda Y, Yamazaki M, Abe M, Fujikawa A, Shigenobu S, Futatsugi A, Noda M, Mikoshiba K, Furuichi T, Sakimura K, Shiina N.

Elife. 2017 Nov 21;6. pii: e29677. doi: 10.7554/eLife.29677.

42.

Transcripts immunoprecipitated with Sxl protein in primordial germ cells of Drosophila embryos.

Ota R, Morita S, Sato M, Shigenobu S, Hayashi M, Kobayashi S.

Dev Growth Differ. 2017 Dec;59(9):713-723. doi: 10.1111/dgd.12408. Epub 2017 Nov 10.

PMID:
29124738
43.

Small genome symbiont underlies cuticle hardness in beetles.

Anbutsu H, Moriyama M, Nikoh N, Hosokawa T, Futahashi R, Tanahashi M, Meng XY, Kuriwada T, Mori N, Oshima K, Hattori M, Fujie M, Satoh N, Maeda T, Shigenobu S, Koga R, Fukatsu T.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8382-E8391. doi: 10.1073/pnas.1712857114. Epub 2017 Sep 18.

44.

Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory.

Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, Mori H, Nishiyama T, Nozawa M, Pálfalvi G, Pollard ST, Rozas J, Sánchez-Gracia A, Sankoff D, Shibata TF, Shigenobu S, Sumikawa N, Uzawa T, Xie M, Zheng C, Pollock DD, Albert VA, Li S, Hasebe M.

Nat Ecol Evol. 2017 Feb 6;1(3):59. doi: 10.1038/s41559-016-0059.

PMID:
28812732
45.

Transcriptome profiling of the spermatheca identifies genes potentially involved in the long-term sperm storage of ant queens.

Gotoh A, Shigenobu S, Yamaguchi K, Kobayashi S, Ito F, Tsuji K.

Sci Rep. 2017 Jul 20;7(1):5972. doi: 10.1038/s41598-017-05818-8.

46.

Novel Stress-Inducible Antisense RNAs of Protein-Coding Loci Are Synthesized by RNA-Dependent RNA Polymerase.

Matsui A, Iida K, Tanaka M, Yamaguchi K, Mizuhashi K, Kim JM, Takahashi S, Kobayashi N, Shigenobu S, Shinozaki K, Seki M.

Plant Physiol. 2017 Sep;175(1):457-472. doi: 10.1104/pp.17.00787. Epub 2017 Jul 14.

47.

Metabolic Integration of Bacterial Endosymbionts through Antimicrobial Peptides.

Mergaert P, Kikuchi Y, Shigenobu S, Nowack ECM.

Trends Microbiol. 2017 Sep;25(9):703-712. doi: 10.1016/j.tim.2017.04.007. Epub 2017 May 23. Review.

PMID:
28549825
48.

ChIP-seq analysis of genomic binding regions of five major transcription factors highlights a central role for ZIC2 in the mouse epiblast stem cell gene regulatory network.

Matsuda K, Mikami T, Oki S, Iida H, Andrabi M, Boss JM, Yamaguchi K, Shigenobu S, Kondoh H.

Development. 2017 Jun 1;144(11):1948-1958. doi: 10.1242/dev.143479. Epub 2017 Apr 28.

49.

Role of LOTR1 in Nutrient Transport through Organization of Spatial Distribution of Root Endodermal Barriers.

Li B, Kamiya T, Kalmbach L, Yamagami M, Yamaguchi K, Shigenobu S, Sawa S, Danku JM, Salt DE, Geldner N, Fujiwara T.

Curr Biol. 2017 Mar 6;27(5):758-765. doi: 10.1016/j.cub.2017.01.030. Epub 2017 Feb 23.

50.

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

Kudo A, Shigenobu S, Kadota K, Nozawa M, Shibata TF, Ishikawa Y, Matsuo T.

Insect Biochem Mol Biol. 2017 Mar;82:11-20. doi: 10.1016/j.ibmb.2017.01.006. Epub 2017 Jan 20.

PMID:
28115271

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