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Items: 1 to 50 of 128

1.

Global Shifts in Gene Expression Profiles Accompanied with Environmental Changes in Cnidarian-Dinoflagellate Endosymbiosis.

Ishii Y, Maruyama S, Takahashi H, Aihara Y, Yamaguchi T, Yamaguchi K, Shigenobu S, Kawata M, Ueno N, Minagawa J.

G3 (Bethesda). 2019 May 16. pii: g3.201012.2018. doi: 10.1534/g3.118.201012. [Epub ahead of print]

2.

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology.

Matsunami M, Suzuki M, Haramoto Y, Fukui A, Inoue T, Yamaguchi K, Uchiyama I, Mori K, Tashiro K, Ito Y, Takeuchi T, Suzuki KT, Agata K, Shigenobu S, Hayashi T.

DNA Res. 2019 Apr 22. pii: dsz003. doi: 10.1093/dnares/dsz003. [Epub ahead of print]

PMID:
31006799
3.

Transcriptomic analysis reveals differences in the regulation of amino acid metabolism in asexual and sexual planarians.

Sekii K, Yorimoto S, Okamoto H, Nagao N, Maezawa T, Matsui Y, Yamaguchi K, Furukawa R, Shigenobu S, Kobayashi K.

Sci Rep. 2019 Apr 16;9(1):6132. doi: 10.1038/s41598-019-42025-z.

4.

Exaggeration and cooption of innate immunity for social defense.

Kutsukake M, Moriyama M, Shigenobu S, Meng XY, Nikoh N, Noda C, Kobayashi S, Fukatsu T.

Proc Natl Acad Sci U S A. 2019 Apr 30;116(18):8950-8959. doi: 10.1073/pnas.1900917116. Epub 2019 Apr 15.

5.

Precise staging of beetle horn formation in Trypoxylus dichotomus reveals the pleiotropic roles of doublesex depending on the spatiotemporal developmental contexts.

Morita S, Ando T, Maeno A, Mizutani T, Mase M, Shigenobu S, Niimi T.

PLoS Genet. 2019 Apr 10;15(4):e1008063. doi: 10.1371/journal.pgen.1008063. eCollection 2019 Apr.

6.

Transcriptomic changes during caste development through social interactions in the termite Zootermopsis nevadensis.

Yaguchi H, Suzuki R, Matsunami M, Shigenobu S, Maekawa K.

Ecol Evol. 2019 Feb 23;9(6):3446-3456. doi: 10.1002/ece3.4976. eCollection 2019 Mar.

7.

Antimicrobial Activities of Cysteine-rich Peptides Specific to Bacteriocytes of the Pea Aphid Acyrthosiphon pisum.

Uchi N, Fukudome M, Nozaki N, Suzuki M, Osuki KI, Shigenobu S, Uchiumi T.

Microbes Environ. 2019 Mar 21. doi: 10.1264/jsme2.ME18148. [Epub ahead of print]

8.

Termite soldier mandibles are elongated by dachshund under hormonal and Hox gene controls.

Sugime Y, Oguchi K, Gotoh H, Hayashi Y, Matsunami M, Shigenobu S, Koshikawa S, Miura T.

Development. 2019 Mar 4;146(5). pii: dev171942. doi: 10.1242/dev.171942.

PMID:
30833380
9.

A draft genome assembly of the solar-powered sea slug Elysia chlorotica.

Cai H, Li Q, Fang X, Li J, Curtis NE, Altenburger A, Shibata T, Feng M, Maeda T, Schwartz JA, Shigenobu S, Lundholm N, Nishiyama T, Yang H, Hasebe M, Li S, Pierce SK, Wang J.

Sci Data. 2019 Feb 19;6:190022. doi: 10.1038/sdata.2019.22.

10.

Molecular Basis of White Adipose Tissue Remodeling That Precedes and Coincides With Hibernation in the Syrian Hamster, a Food-Storing Hibernator.

Chayama Y, Ando L, Sato Y, Shigenobu S, Anegawa D, Fujimoto T, Taii H, Tamura Y, Miura M, Yamaguchi Y.

Front Physiol. 2019 Jan 28;9:1973. doi: 10.3389/fphys.2018.01973. eCollection 2018.

11.

Comparative cytology, physiology and transcriptomics of Burkholderia insecticola in symbiosis with the bean bug Riptortus pedestris and in culture.

Ohbayashi T, Futahashi R, Terashima M, Barrière Q, Lamouche F, Takeshita K, Meng XY, Mitani Y, Sone T, Shigenobu S, Fukatsu T, Mergaert P, Kikuchi Y.

ISME J. 2019 Feb 11. doi: 10.1038/s41396-019-0361-8. [Epub ahead of print]

PMID:
30742016
12.

A novel splicing variant of small nucleolar RNA host gene 4 is a podocyte-selective non-coding RNA upregulated in response to puromycin aminonucleoside-induced podocyte injury.

Horikawa A, Yoneda T, Yaoita E, Yamaguchi K, Shigenobu S, Kuramochi M, Yamate J, Inui T, Ishibashi O.

J Biochem. 2019 May 1;165(5):447-454. doi: 10.1093/jb/mvy118.

PMID:
30597036
13.

Nonsense mutation in PMEL is associated with yellowish plumage colour phenotype in Japanese quail.

Ishishita S, Takahashi M, Yamaguchi K, Kinoshita K, Nakano M, Nunome M, Kitahara S, Tatsumoto S, Go Y, Shigenobu S, Matsuda Y.

Sci Rep. 2018 Nov 13;8(1):16732. doi: 10.1038/s41598-018-34827-4.

14.

Novel components of germline sex determination acting downstream of foxl3 in medaka.

Kikuchi M, Nishimura T, Saito D, Shigenobu S, Takada R, Gutierrez-Triana JA, Cerdán JLM, Takada S, Wittbrodt J, Suyama M, Tanaka M.

Dev Biol. 2019 Jan 1;445(1):80-89. doi: 10.1016/j.ydbio.2018.10.019. Epub 2018 Oct 27.

PMID:
30392839
15.

Firefly genomes illuminate parallel origins of bioluminescence in beetles.

Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK.

Elife. 2018 Oct 16;7. pii: e36495. doi: 10.7554/eLife.36495.

16.

Rhinoceros beetle horn development reveals deep parallels with dung beetles.

Ohde T, Morita S, Shigenobu S, Morita J, Mizutani T, Gotoh H, Zinna RA, Nakata M, Ito Y, Wada K, Kitano Y, Yuzaki K, Toga K, Mase M, Kadota K, Rushe J, Lavine LC, Emlen DJ, Niimi T.

PLoS Genet. 2018 Oct 4;14(10):e1007651. doi: 10.1371/journal.pgen.1007651. eCollection 2018 Oct.

17.

Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis.

Maeda T, Kobayashi Y, Kameoka H, Okuma N, Takeda N, Yamaguchi K, Bino T, Shigenobu S, Kawaguchi M.

Commun Biol. 2018 Jul 10;1:87. doi: 10.1038/s42003-018-0094-7. eCollection 2018.

18.

Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.

Ando T, Matsuda T, Goto K, Hara K, Ito A, Hirata J, Yatomi J, Kajitani R, Okuno M, Yamaguchi K, Kobayashi M, Takano T, Minakuchi Y, Seki M, Suzuki Y, Yano K, Itoh T, Shigenobu S, Toyoda A, Niimi T.

Nat Commun. 2018 Sep 21;9(1):3843. doi: 10.1038/s41467-018-06116-1.

19.

Cas9 ribonucleoprotein complex allows direct and rapid analysis of coding and noncoding regions of target genes in Pleurodeles waltl development and regeneration.

Suzuki M, Hayashi T, Inoue T, Agata K, Hirayama M, Suzuki M, Shigenobu S, Takeuchi T, Yamamoto T, Suzuki KT.

Dev Biol. 2018 Nov 15;443(2):127-136. doi: 10.1016/j.ydbio.2018.09.008. Epub 2018 Sep 10.

PMID:
30213538
20.

Caste-specific microRNA expression in termites: insights into soldier differentiation.

Matsunami M, Nozawa M, Suzuki R, Toga K, Masuoka Y, Yamaguchi K, Maekawa K, Shigenobu S, Miura T.

Insect Mol Biol. 2019 Feb;28(1):86-98. doi: 10.1111/imb.12530. Epub 2018 Oct 16.

PMID:
30126008
21.

Functional divergence of a heterochromatin-binding protein during stickleback speciation.

Yoshida K, Ishikawa A, Toyoda A, Shigenobu S, Fujiyama A, Kitano J.

Mol Ecol. 2019 Mar;28(6):1563-1578. doi: 10.1111/mec.14841. Epub 2018 Sep 7.

PMID:
30117211
22.

A lipocalin protein, Neural Lazarillo, is key to social interactions that promote termite soldier differentiation.

Yaguchi H, Shigenobu S, Hayashi Y, Miyazaki S, Toga K, Masuoka Y, Maekawa K.

Proc Biol Sci. 2018 Jul 25;285(1883). pii: 20180707. doi: 10.1098/rspb.2018.0707.

PMID:
30051867
23.

High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O.

Sato K, Kadota Y, Gan P, Bino T, Uehara T, Yamaguchi K, Ichihashi Y, Maki N, Iwahori H, Suzuki T, Shigenobu S, Shirasu K.

Genome Announc. 2018 Jun 28;6(26). pii: e00519-18. doi: 10.1128/genomeA.00519-18.

24.

The genome of Rhizophagus clarus HR1 reveals a common genetic basis for auxotrophy among arbuscular mycorrhizal fungi.

Kobayashi Y, Maeda T, Yamaguchi K, Kameoka H, Tanaka S, Ezawa T, Shigenobu S, Kawaguchi M.

BMC Genomics. 2018 Jun 18;19(1):465. doi: 10.1186/s12864-018-4853-0.

25.

Human-specific features of spatial gene expression and regulation in eight brain regions.

Xu C, Li Q, Efimova O, He L, Tatsumoto S, Stepanova V, Oishi T, Udono T, Yamaguchi K, Shigenobu S, Kakita A, Nawa H, Khaitovich P, Go Y.

Genome Res. 2018 Aug;28(8):1097-1110. doi: 10.1101/gr.231357.117. Epub 2018 Jun 13.

26.

Genomic Insight into Symbiosis-Induced Insect Color Change by a Facultative Bacterial Endosymbiont, "Candidatus Rickettsiella viridis".

Nikoh N, Tsuchida T, Maeda T, Yamaguchi K, Shigenobu S, Koga R, Fukatsu T.

MBio. 2018 Jun 12;9(3). pii: e00890-18. doi: 10.1128/mBio.00890-18.

27.

Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches.

Kinjo Y, Bourguignon T, Tong KJ, Kuwahara H, Lim SJ, Yoon KB, Shigenobu S, Park YC, Nalepa CA, Hongoh Y, Ohkuma M, Lo N, Tokuda G.

Genome Biol Evol. 2018 Jun 1;10(6):1622-1630. doi: 10.1093/gbe/evy110.

28.

The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression.

Ravinet M, Yoshida K, Shigenobu S, Toyoda A, Fujiyama A, Kitano J.

PLoS Genet. 2018 May 23;14(5):e1007358. doi: 10.1371/journal.pgen.1007358. eCollection 2018 May.

29.

The Mycoheterotrophic Symbiosis Between Orchids and Mycorrhizal Fungi Possesses Major Components Shared with Mutualistic Plant-Mycorrhizal Symbioses.

Miura C, Yamaguchi K, Miyahara R, Yamamoto T, Fuji M, Yagame T, Imaizumi-Anraku H, Yamato M, Shigenobu S, Kaminaka H.

Mol Plant Microbe Interact. 2018 Oct;31(10):1032-1047. doi: 10.1094/MPMI-01-18-0029-R. Epub 2018 Aug 22.

PMID:
29649962
30.

TGFβ signaling related genes are involved in hormonal mediation during termite soldier differentiation.

Masuoka Y, Yaguchi H, Toga K, Shigenobu S, Maekawa K.

PLoS Genet. 2018 Apr 11;14(4):e1007338. doi: 10.1371/journal.pgen.1007338. eCollection 2018 Apr.

31.

Generative Cell Specification Requires Transcription Factors Evolutionarily Conserved in Land Plants.

Yamaoka S, Nishihama R, Yoshitake Y, Ishida S, Inoue K, Saito M, Okahashi K, Bao H, Nishida H, Yamaguchi K, Shigenobu S, Ishizaki K, Yamato KT, Kohchi T.

Curr Biol. 2018 Feb 5;28(3):479-486.e5. doi: 10.1016/j.cub.2017.12.053. Epub 2018 Jan 25.

32.

Physcomitrella MADS-box genes regulate water supply and sperm movement for fertilization.

Koshimizu S, Kofuji R, Sasaki-Sekimoto Y, Kikkawa M, Shimojima M, Ohta H, Shigenobu S, Kabeya Y, Hiwatashi Y, Tamada Y, Murata T, Hasebe M.

Nat Plants. 2018 Jan;4(1):36-45. doi: 10.1038/s41477-017-0082-9. Epub 2018 Jan 3.

PMID:
29296005
33.

Transcriptome characterization of male accessory glands in ants to identify molecules involved in their reproductive success.

Gotoh A, Shigenobu S, Yamaguchi K, Kobayashi S, Ito F, Tsuji K.

Insect Mol Biol. 2018 Apr;27(2):212-220. doi: 10.1111/imb.12364. Epub 2017 Dec 11.

PMID:
29226989
34.

RNG105/caprin1, an RNA granule protein for dendritic mRNA localization, is essential for long-term memory formation.

Nakayama K, Ohashi R, Shinoda Y, Yamazaki M, Abe M, Fujikawa A, Shigenobu S, Futatsugi A, Noda M, Mikoshiba K, Furuichi T, Sakimura K, Shiina N.

Elife. 2017 Nov 21;6. pii: e29677. doi: 10.7554/eLife.29677.

35.

Transcripts immunoprecipitated with Sxl protein in primordial germ cells of Drosophila embryos.

Ota R, Morita S, Sato M, Shigenobu S, Hayashi M, Kobayashi S.

Dev Growth Differ. 2017 Dec;59(9):713-723. doi: 10.1111/dgd.12408. Epub 2017 Nov 10.

PMID:
29124738
36.

Small genome symbiont underlies cuticle hardness in beetles.

Anbutsu H, Moriyama M, Nikoh N, Hosokawa T, Futahashi R, Tanahashi M, Meng XY, Kuriwada T, Mori N, Oshima K, Hattori M, Fujie M, Satoh N, Maeda T, Shigenobu S, Koga R, Fukatsu T.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8382-E8391. doi: 10.1073/pnas.1712857114. Epub 2017 Sep 18.

37.

Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory.

Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, Mori H, Nishiyama T, Nozawa M, Pálfalvi G, Pollard ST, Rozas J, Sánchez-Gracia A, Sankoff D, Shibata TF, Shigenobu S, Sumikawa N, Uzawa T, Xie M, Zheng C, Pollock DD, Albert VA, Li S, Hasebe M.

Nat Ecol Evol. 2017 Feb 6;1(3):59. doi: 10.1038/s41559-016-0059.

PMID:
28812732
38.

Transcriptome profiling of the spermatheca identifies genes potentially involved in the long-term sperm storage of ant queens.

Gotoh A, Shigenobu S, Yamaguchi K, Kobayashi S, Ito F, Tsuji K.

Sci Rep. 2017 Jul 20;7(1):5972. doi: 10.1038/s41598-017-05818-8.

39.

Novel Stress-Inducible Antisense RNAs of Protein-Coding Loci Are Synthesized by RNA-Dependent RNA Polymerase.

Matsui A, Iida K, Tanaka M, Yamaguchi K, Mizuhashi K, Kim JM, Takahashi S, Kobayashi N, Shigenobu S, Shinozaki K, Seki M.

Plant Physiol. 2017 Sep;175(1):457-472. doi: 10.1104/pp.17.00787. Epub 2017 Jul 14.

40.

Metabolic Integration of Bacterial Endosymbionts through Antimicrobial Peptides.

Mergaert P, Kikuchi Y, Shigenobu S, Nowack ECM.

Trends Microbiol. 2017 Sep;25(9):703-712. doi: 10.1016/j.tim.2017.04.007. Epub 2017 May 23. Review.

PMID:
28549825
41.

ChIP-seq analysis of genomic binding regions of five major transcription factors highlights a central role for ZIC2 in the mouse epiblast stem cell gene regulatory network.

Matsuda K, Mikami T, Oki S, Iida H, Andrabi M, Boss JM, Yamaguchi K, Shigenobu S, Kondoh H.

Development. 2017 Jun 1;144(11):1948-1958. doi: 10.1242/dev.143479. Epub 2017 Apr 28.

42.

Role of LOTR1 in Nutrient Transport through Organization of Spatial Distribution of Root Endodermal Barriers.

Li B, Kamiya T, Kalmbach L, Yamagami M, Yamaguchi K, Shigenobu S, Sawa S, Danku JM, Salt DE, Geldner N, Fujiwara T.

Curr Biol. 2017 Mar 6;27(5):758-765. doi: 10.1016/j.cub.2017.01.030. Epub 2017 Feb 23.

43.

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

Kudo A, Shigenobu S, Kadota K, Nozawa M, Shibata TF, Ishikawa Y, Matsuo T.

Insect Biochem Mol Biol. 2017 Mar;82:11-20. doi: 10.1016/j.ibmb.2017.01.006. Epub 2017 Jan 20.

PMID:
28115271
44.

Comparison of green and albino individuals of the partially mycoheterotrophic orchid Epipactis helleborine on molecular identities of mycorrhizal fungi, nutritional modes and gene expression in mycorrhizal roots.

Suetsugu K, Yamato M, Miura C, Yamaguchi K, Takahashi K, Ida Y, Shigenobu S, Kaminaka H.

Mol Ecol. 2017 Mar;26(6):1652-1669. doi: 10.1111/mec.14021. Epub 2017 Feb 6.

PMID:
28099773
45.

Conserved role of Ovo in germline development in mouse and Drosophila.

Hayashi M, Shinozuka Y, Shigenobu S, Sato M, Sugimoto M, Ito S, Abe K, Kobayashi S.

Sci Rep. 2017 Jan 6;7:40056. doi: 10.1038/srep40056.

46.

Expression of the alaE gene is positively regulated by the global regulator Lrp in response to intracellular accumulation of l-alanine in Escherichia coli.

Ihara K, Sato K, Hori H, Makino Y, Shigenobu S, Ando T, Isogai E, Yoneyama H.

J Biosci Bioeng. 2017 Apr;123(4):444-450. doi: 10.1016/j.jbiosc.2016.11.015. Epub 2017 Jan 3.

PMID:
28057466
47.

MYB transcription factor gene involved in sex determination in Asparagus officinalis.

Murase K, Shigenobu S, Fujii S, Ueda K, Murata T, Sakamoto A, Wada Y, Yamaguchi K, Osakabe Y, Osakabe K, Kanno A, Ozaki Y, Takayama S.

Genes Cells. 2017 Jan;22(1):115-123. doi: 10.1111/gtc.12453. Epub 2016 Nov 21.

48.

APOBEC3A associates with human papillomavirus genome integration in oropharyngeal cancers.

Kondo S, Wakae K, Wakisaka N, Nakanishi Y, Ishikawa K, Komori T, Moriyama-Kita M, Endo K, Murono S, Wang Z, Kitamura K, Nishiyama T, Yamaguchi K, Shigenobu S, Muramatsu M, Yoshizaki T.

Oncogene. 2017 Mar 23;36(12):1687-1697. doi: 10.1038/onc.2016.335. Epub 2016 Oct 3.

PMID:
27694899
49.

Draft Genome Sequence of Helicobacter suis Strain SNTW101, Isolated from a Japanese Patient with Nodular Gastritis.

Matsui H, Takahashi T, Murayama SY, Uchiyama I, Yamaguchi K, Shigenobu S, Suzuki M, Rimbara E, Shibayama K, Øverby A, Nakamura M.

Genome Announc. 2016 Sep 8;4(5). pii: e00934-16. doi: 10.1128/genomeA.00934-16.

50.

Heterotrimeric G proteins control stem cell proliferation through CLAVATA signaling in Arabidopsis.

Ishida T, Tabata R, Yamada M, Aida M, Mitsumasu K, Fujiwara M, Yamaguchi K, Shigenobu S, Higuchi M, Tsuji H, Shimamoto K, Hasebe M, Fukuda H, Sawa S.

EMBO Rep. 2016 Aug;17(8):1236. doi: 10.15252/embr.201678010. No abstract available.

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