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Items: 1 to 50 of 204

1.

Evolutionary history of teleost intron-containing and intron-less rhodopsin genes.

Fujiyabu C, Sato K, Utari NML, Ohuchi H, Shichida Y, Yamashita T.

Sci Rep. 2019 Jul 23;9(1):10653. doi: 10.1038/s41598-019-47028-4.

2.

Elementary response triggered by transducin in retinal rods.

Yue WWS, Silverman D, Ren X, Frederiksen R, Sakai K, Yamashita T, Shichida Y, Cornwall MC, Chen J, Yau KW.

Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5144-5153. doi: 10.1073/pnas.1817781116. Epub 2019 Feb 22.

3.

A Distinct Subset of Fibroblastic Stromal Cells Constitutes the Cortex-Medulla Boundary Subcompartment of the Lymph Node.

Takeuchi A, Ozawa M, Kanda Y, Kozai M, Ohigashi I, Kurosawa Y, Rahman MA, Kawamura T, Shichida Y, Umemoto E, Miyasaka M, Ludewig B, Takahama Y, Nagasawa T, Katakai T.

Front Immunol. 2018 Oct 2;9:2196. doi: 10.3389/fimmu.2018.02196. eCollection 2018.

4.

Pinopsin evolved as the ancestral dim-light visual opsin in vertebrates.

Sato K, Yamashita T, Kojima K, Sakai K, Matsutani Y, Yanagawa M, Yamano Y, Wada A, Iwabe N, Ohuchi H, Shichida Y.

Commun Biol. 2018 Oct 1;1:156. doi: 10.1038/s42003-018-0164-x. eCollection 2018.

5.

Single-molecule diffusion-based estimation of ligand effects on G protein-coupled receptors.

Yanagawa M, Hiroshima M, Togashi Y, Abe M, Yamashita T, Shichida Y, Murata M, Ueda M, Sako Y.

Sci Signal. 2018 Sep 18;11(548). pii: eaao1917. doi: 10.1126/scisignal.aao1917.

PMID:
30228224
6.

Red-Tuning of the Channelrhodopsin Spectrum Using Long Conjugated Retinal Analogues.

Shen YC, Sasaki T, Matsuyama T, Yamashita T, Shichida Y, Okitsu T, Yamano Y, Wada A, Ishizuka T, Yawo H, Imamoto Y.

Biochemistry. 2018 Sep 25;57(38):5544-5556. doi: 10.1021/acs.biochem.8b00583. Epub 2018 Sep 12.

PMID:
30153419
7.

Genotype determination of the OPN1LW/OPN1MW genes: novel disease-causing mechanisms in Japanese patients with blue cone monochromacy.

Katagiri S, Iwasa M, Hayashi T, Hosono K, Yamashita T, Kuniyoshi K, Ueno S, Kondo M, Ueyama H, Ogita H, Shichida Y, Inagaki H, Kurahashi H, Kondo H, Ohji M, Hotta Y, Nakano T.

Sci Rep. 2018 Jul 31;8(1):11507. doi: 10.1038/s41598-018-29891-9.

8.

Shift in Conformational Equilibrium Induces Constitutive Activity of G-Protein-Coupled Receptor, Rhodopsin.

Maeda R, Hiroshima M, Yamashita T, Wada A, Sako Y, Shichida Y, Imamoto Y.

J Phys Chem B. 2018 May 10;122(18):4838-4843. doi: 10.1021/acs.jpcb.8b02819. Epub 2018 Apr 27.

PMID:
29668280
9.

Opn5L1 is a retinal receptor that behaves as a reverse and self-regenerating photoreceptor.

Sato K, Yamashita T, Ohuchi H, Takeuchi A, Gotoh H, Ono K, Mizuno M, Mizutani Y, Tomonari S, Sakai K, Imamoto Y, Wada A, Shichida Y.

Nat Commun. 2018 Mar 28;9(1):1255. doi: 10.1038/s41467-018-03603-3.

10.

Chimeric microbial rhodopsins for optical activation of Gs-proteins.

Yoshida K, Yamashita T, Sasaki K, Inoue K, Shichida Y, Kandori H.

Biophys Physicobiol. 2017 Dec 19;14:183-190. doi: 10.2142/biophysico.14.0_183. eCollection 2017.

11.

Drosophila melanogaster rhodopsin Rh7 is a UV-to-visible light sensor with an extraordinarily broad absorption spectrum.

Sakai K, Tsutsui K, Yamashita T, Iwabe N, Takahashi K, Wada A, Shichida Y.

Sci Rep. 2017 Aug 4;7(1):7349. doi: 10.1038/s41598-017-07461-9.

12.

Evolutionary steps involving counterion displacement in a tunicate opsin.

Kojima K, Yamashita T, Imamoto Y, Kusakabe TG, Tsuda M, Shichida Y.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):6028-6033. doi: 10.1073/pnas.1701088114. Epub 2017 May 22.

13.

Adaptation of cone pigments found in green rods for scotopic vision through a single amino acid mutation.

Kojima K, Matsutani Y, Yamashita T, Yanagawa M, Imamoto Y, Yamano Y, Wada A, Hisatomi O, Nishikawa K, Sakurai K, Shichida Y.

Proc Natl Acad Sci U S A. 2017 May 23;114(21):5437-5442. doi: 10.1073/pnas.1620010114. Epub 2017 May 8.

14.

Alternative Formation of Red-Shifted Channelrhodopsins: Noncovalent Incorporation with Retinal-Based Enamine-Type Schiff Bases and Mutated Channelopsin.

Okitsu T, Matsuyama T, Yamashita T, Ishizuka T, Yawo H, Imamoto Y, Shichida Y, Wada A.

Chem Pharm Bull (Tokyo). 2017;65(4):356-358. doi: 10.1248/cpb.c17-00054.

15.

Spontaneous activation of visual pigments in relation to openness/closedness of chromophore-binding pocket.

Yue WW, Frederiksen R, Ren X, Luo DG, Yamashita T, Shichida Y, Cornwall MC, Yau KW.

Elife. 2017 Feb 10;6. pii: e18492. doi: 10.7554/eLife.18492.

16.

Two Opsin 3-Related Proteins in the Chicken Retina and Brain: A TMT-Type Opsin 3 Is a Blue-Light Sensor in Retinal Horizontal Cells, Hypothalamus, and Cerebellum.

Kato M, Sugiyama T, Sakai K, Yamashita T, Fujita H, Sato K, Tomonari S, Shichida Y, Ohuchi H.

PLoS One. 2016 Nov 18;11(11):e0163925. doi: 10.1371/journal.pone.0163925. eCollection 2016.

17.

Two UV-Sensitive Photoreceptor Proteins, Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the Retina and Brain.

Sato K, Yamashita T, Haruki Y, Ohuchi H, Kinoshita M, Shichida Y.

PLoS One. 2016 May 11;11(5):e0155339. doi: 10.1371/journal.pone.0155339. eCollection 2016.

18.

Diversity of Active States in TMT Opsins.

Sakai K, Yamashita T, Imamoto Y, Shichida Y.

PLoS One. 2015 Oct 22;10(10):e0141238. doi: 10.1371/journal.pone.0141238. eCollection 2015.

19.

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions.

Koyanagi M, Wada S, Kawano-Yamashita E, Hara Y, Kuraku S, Kosaka S, Kawakami K, Tamotsu S, Tsukamoto H, Shichida Y, Terakita A.

BMC Biol. 2015 Sep 15;13:73. doi: 10.1186/s12915-015-0174-9.

20.

Helical rearrangement of photoactivated rhodopsin in monomeric and dimeric forms probed by high-angle X-ray scattering.

Imamoto Y, Kojima K, Oka T, Maeda R, Shichida Y.

Photochem Photobiol Sci. 2015 Nov;14(11):1965-73. doi: 10.1039/c5pp00175g.

PMID:
26293780
21.

Origin of the low thermal isomerization rate of rhodopsin chromophore.

Yanagawa M, Kojima K, Yamashita T, Imamoto Y, Matsuyama T, Nakanishi K, Yamano Y, Wada A, Sako Y, Shichida Y.

Sci Rep. 2015 Jun 10;5:11081. doi: 10.1038/srep11081.

22.

Contribution of glutamic acid in the conserved E/DRY triad to the functional properties of rhodopsin.

Sato K, Yamashita T, Shichida Y.

Biochemistry. 2014 Jul 15;53(27):4420-5. doi: 10.1021/bi5003772. Epub 2014 Jul 1.

PMID:
24960425
23.

Intramolecular interactions that induce helical rearrangement upon rhodopsin activation: light-induced structural changes in metarhodopsin IIa probed by cysteine S-H stretching vibrations.

Yamazaki Y, Nagata T, Terakita A, Kandori H, Shichida Y, Imamoto Y.

J Biol Chem. 2014 May 16;289(20):13792-800. doi: 10.1074/jbc.M113.527606. Epub 2014 Apr 1.

24.

Chimeric proton-pumping rhodopsins containing the cytoplasmic loop of bovine rhodopsin.

Sasaki K, Yamashita T, Yoshida K, Inoue K, Shichida Y, Kandori H.

PLoS One. 2014 Mar 12;9(3):e91323. doi: 10.1371/journal.pone.0091323. eCollection 2014.

25.

Single-molecule observation of the ligand-induced population shift of rhodopsin, a G-protein-coupled receptor.

Maeda R, Hiroshima M, Yamashita T, Wada A, Nishimura S, Sako Y, Shichida Y, Imamoto Y.

Biophys J. 2014 Feb 18;106(4):915-24. doi: 10.1016/j.bpj.2014.01.020.

26.

Evolution of mammalian Opn5 as a specialized UV-absorbing pigment by a single amino acid mutation.

Yamashita T, Ono K, Ohuchi H, Yumoto A, Gotoh H, Tomonari S, Sakai K, Fujita H, Imamoto Y, Noji S, Nakamura K, Shichida Y.

J Biol Chem. 2014 Feb 14;289(7):3991-4000. doi: 10.1074/jbc.M113.514075. Epub 2014 Jan 8.

27.

Rod visual pigment optimizes active state to achieve efficient G protein activation as compared with cone visual pigments.

Kojima K, Imamoto Y, Maeda R, Yamashita T, Shichida Y.

J Biol Chem. 2014 Feb 21;289(8):5061-73. doi: 10.1074/jbc.M113.508507. Epub 2013 Dec 27.

28.

Mapping of the local environmental changes in proteins by cysteine scanning.

Yamazaki Y, Nagata T, Terakita A, Kandori H, Shichida Y, Imamoto Y.

Biophysics (Nagoya-shi). 2014 Jan 16;10:1-7. doi: 10.2142/biophysics.10.1. eCollection 2014.

29.

Different phosphorylation rates among vertebrate cone visual pigments with different spectral sensitivities.

Tsutsui K, Tachibanaki S, Shimauchi-Matsukawa Y, Shichida Y, Kawamura S.

Biochem Biophys Res Commun. 2013 Nov 1;440(4):630-4. doi: 10.1016/j.bbrc.2013.09.118. Epub 2013 Oct 7.

PMID:
24113380
30.

Cone visual pigments.

Imamoto Y, Shichida Y.

Biochim Biophys Acta. 2014 May;1837(5):664-73. doi: 10.1016/j.bbabio.2013.08.009. Epub 2013 Sep 7. Review.

31.

Efficiencies of activation of transducin by cone and rod visual pigments.

Imamoto Y, Seki I, Yamashita T, Shichida Y.

Biochemistry. 2013 Apr 30;52(17):3010-8. doi: 10.1021/bi3015967. Epub 2013 Apr 19.

PMID:
23570417
32.

Glutamate acts as a partial inverse agonist to metabotropic glutamate receptor with a single amino acid mutation in the transmembrane domain.

Yanagawa M, Yamashita T, Shichida Y.

J Biol Chem. 2013 Apr 5;288(14):9593-601. doi: 10.1074/jbc.M112.437780. Epub 2013 Feb 18.

33.

Chloride-dependent spectral tuning mechanism of L-group cone visual pigments.

Yamashita T, Nakamura S, Tsutsui K, Morizumi T, Shichida Y.

Biochemistry. 2013 Feb 19;52(7):1192-7. doi: 10.1021/bi3016058. Epub 2013 Feb 5.

PMID:
23350963
34.

Spectroscopic analysis of the effect of chloride on the active intermediates of the primate L group cone visual pigment.

Morizumi T, Sato K, Shichida Y.

Biochemistry. 2012 Dec 18;51(50):10017-23. doi: 10.1021/bi300995s. Epub 2012 Dec 6.

PMID:
23176664
35.

Unique haplotype in exon 3 of cone opsin mRNA affects splicing of its precursor, leading to congenital color vision defect.

Ueyama H, Muraki-Oda S, Yamade S, Tanabe S, Yamashita T, Shichida Y, Ogita H.

Biochem Biophys Res Commun. 2012 Jul 20;424(1):152-7. doi: 10.1016/j.bbrc.2012.06.094. Epub 2012 Jun 23.

PMID:
22732407
36.

Photochemical properties of mammalian melanopsin.

Matsuyama T, Yamashita T, Imamoto Y, Shichida Y.

Biochemistry. 2012 Jul 10;51(27):5454-62. Epub 2012 Jun 25.

PMID:
22670683
37.

Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment.

Sato K, Yamashita T, Imamoto Y, Shichida Y.

Biochemistry. 2012 May 29;51(21):4300-8. doi: 10.1021/bi3000885. Epub 2012 May 17.

PMID:
22571736
38.

The C-terminus of the G protein α subunit controls the affinity of nucleotides.

Kimata N, Yamashita T, Matsuyama T, Imamoto Y, Shichida Y.

Biochemistry. 2012 Apr 3;51(13):2768-74. doi: 10.1021/bi201702d. Epub 2012 Mar 20.

PMID:
22404167
39.

A non-mammalian type opsin 5 functions dually in the photoreceptive and non-photoreceptive organs of birds.

Ohuchi H, Yamashita T, Tomonari S, Fujita-Yanagibayashi S, Sakai K, Noji S, Shichida Y.

PLoS One. 2012;7(2):e31534. doi: 10.1371/journal.pone.0031534. Epub 2012 Feb 14.

40.

Photochemical nature of parietopsin.

Sakai K, Imamoto Y, Su CY, Tsukamoto H, Yamashita T, Terakita A, Yau KW, Shichida Y.

Biochemistry. 2012 Mar 6;51(9):1933-41. doi: 10.1021/bi2018283. Epub 2012 Feb 23.

41.

Depth perception from image defocus in a jumping spider.

Nagata T, Koyanagi M, Tsukamoto H, Saeki S, Isono K, Shichida Y, Tokunaga F, Kinoshita M, Arikawa K, Terakita A.

Science. 2012 Jan 27;335(6067):469-71. doi: 10.1126/science.1211667.

42.

[Dimerization of G protein-coupled receptors: molecular mechanism of the interprotomer communication].

Yanagawa M, Shichida Y.

Seikagaku. 2011 Oct;83(10):949-56. Review. Japanese. No abstract available.

PMID:
22184888
43.

Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments.

Sato K, Yamashita T, Ohuchi H, Shichida Y.

Biochemistry. 2011 Dec 6;50(48):10484-90. doi: 10.1021/bi201212z. Epub 2011 Nov 11.

PMID:
22066464
44.
45.

Chimeric microbial rhodopsins containing the third cytoplasmic loop of bovine rhodopsin.

Nakatsuma A, Yamashita T, Sasaki K, Kawanabe A, Inoue K, Furutani Y, Shichida Y, Kandori H.

Biophys J. 2011 Apr 20;100(8):1874-82. doi: 10.1016/j.bpj.2011.02.054.

46.

β-arrestin functionally regulates the non-bleaching pigment parapinopsin in lamprey pineal.

Kawano-Yamashita E, Koyanagi M, Shichida Y, Oishi T, Tamotsu S, Terakita A.

PLoS One. 2011 Jan 31;6(1):e16402. doi: 10.1371/journal.pone.0016402.

47.

Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein.

Yamashita T, Ohuchi H, Tomonari S, Ikeda K, Sakai K, Shichida Y.

Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):22084-9. doi: 10.1073/pnas.1012498107. Epub 2010 Dec 6.

48.

Evolution and mechanism of spectral tuning of blue-absorbing visual pigments in butterflies.

Wakakuwa M, Terakita A, Koyanagi M, Stavenga DG, Shichida Y, Arikawa K.

PLoS One. 2010 Nov 24;5(11):e15015. doi: 10.1371/journal.pone.0015015.

49.

Photosensitivities of rhodopsin mutants with a displaced counterion.

Tsutsui K, Shichida Y.

Biochemistry. 2010 Nov 30;49(47):10089-97. doi: 10.1021/bi101020p. Epub 2010 Nov 8.

PMID:
21038858
50.

Functional analysis of the second extracellular loop of rhodopsin by characterizing split variants.

Sakai K, Imamoto Y, Yamashita T, Shichida Y.

Photochem Photobiol Sci. 2010 Nov;9(11):1490-7. doi: 10.1039/c0pp00183j. Epub 2010 Oct 1.

PMID:
20886156

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