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Towards identification of bioactive compounds in cold vacuum extracted double cherry blossom (Gosen-Sakura) leaves.

Shibato J, Takenoya F, Hirabayashi T, Kimura A, Iwasaki Y, Toyoda Y, Hori M, Tamogami S, Rakwal R, Shioda S.

Plant Signal Behav. 2019;14(10):e1644594. doi: 10.1080/15592324.2019.1644594. Epub 2019 Jul 25.


Leptin in hippocampus mediates benefits of mild exercise by an antioxidant on neurogenesis and memory.

Yook JS, Rakwal R, Shibato J, Takahashi K, Koizumi H, Shima T, Ikemoto MJ, Oharomari LK, McEwen BS, Soya H.

Proc Natl Acad Sci U S A. 2019 May 28;116(22):10988-10993. doi: 10.1073/pnas.1815197116. Epub 2019 May 13.


Progress Toward Rice Seed OMICS in Low-Level Gamma Radiation Environment in Iitate Village, Fukushima.

Rakwal R, Hayashi G, Shibato J, Deepak SA, Gundimeda S, Simha U, Padmanaban A, Gupta R, Han SI, Kim ST, Kubo A, Imanaka T, Fukumoto M, Agrawal GK, Shioda S.

J Hered. 2018 Feb 14;109(2):206-211. doi: 10.1093/jhered/esx071.


Behavioral and omics analyses study on potential involvement of dipeptide balenine through supplementation in diet of senescence-accelerated mouse prone 8.

Wada N, Yamanaka S, Shibato J, Rakwal R, Hirako S, Iizuka Y, Kim H, Matsumoto A, Kimura A, Takenoya F, Yasunaga G, Shioda S.

Genom Data. 2016 Sep 9;10:38-50. doi: 10.1016/j.gdata.2016.09.004. eCollection 2016 Dec.


Unraveling the rat blood genome-wide transcriptome after oral administration of lavender oil by a two-color dye-swap DNA microarray approach.

Hori M, Kubo H, Shibato J, Saito T, Ogawa T, Wakamori M, Masuo Y, Shioda S, Rakwal R.

Genom Data. 2016 May 12;8:139-45. doi: 10.1016/j.gdata.2016.05.005. eCollection 2016 Jun.


Retroviral induction of GSK-3β expression blocks the stimulatory action of physical exercise on the maturation of newborn neurons.

Llorens-Martín M, Teixeira CM, Jurado-Arjona J, Rakwal R, Shibato J, Soya H, Ávila J.

Cell Mol Life Sci. 2016 Sep;73(18):3569-82. doi: 10.1007/s00018-016-2181-6. Epub 2016 Mar 24.


DNA microarray-based experimental strategy for trustworthy expression profiling of the hippocampal genes by astaxanthin supplementation in adult mouse.

Yook JS, Shibato J, Rakwal R, Soya H.

Genom Data. 2015 Nov 7;7:32-7. doi: 10.1016/j.gdata.2015.11.001. eCollection 2016 Mar.


Astaxanthin supplementation enhances adult hippocampal neurogenesis and spatial memory in mice.

Yook JS, Okamoto M, Rakwal R, Shibato J, Lee MC, Matsui T, Chang H, Cho JY, Soya H.

Mol Nutr Food Res. 2016 Mar;60(3):589-99. doi: 10.1002/mnfr.201500634. Epub 2016 Jan 7.


DNA microarray unravels rapid changes in transcriptome of MK-801 treated rat brain.

Kobayashi Y, Kulikova SP, Shibato J, Rakwal R, Satoh H, Pinault D, Masuo Y.

World J Biol Chem. 2015 Nov 26;6(4):389-408. doi: 10.4331/wjbc.v6.i4.389.


Two-color Dye-swap DNA Microarray approach toward confident gene expression profiling in PMCAO mouse model for ischemia-related and PACAP38-influenced genes.

Hori M, Shibato J, Nakamachi T, Rakwal R, Ogawa T, Shioda S, Numazawa S.

Genom Data. 2015 Jan 22;3:148-54. doi: 10.1016/j.gdata.2015.01.007. eCollection 2015 Mar.


2D-DIGE-based proteome expression changes in leaves of rice seedlings exposed to low-level gamma radiation at Iitate village, Fukushima.

Hayashi G, Moro CF, Rohila JS, Shibato J, Kubo A, Imanaka T, Kimura S, Ozawa S, Fukutani S, Endo S, Ichikawa K, Agrawal GK, Shioda S, Hori M, Fukumoto M, Rakwal R.

Plant Signal Behav. 2015;10(12):e1103406. doi: 10.1080/15592324.2015.1103406.


Immature Seed Endosperm and Embryo Proteomics of the Lotus (Nelumbo Nucifera Gaertn.) by One-Dimensional Gel-Based Tandem Mass Spectrometry and a Comparison with the Mature Endosperm Proteome.

Moro CF, Fukao Y, Shibato J, Rakwal R, Agrawal GK, Shioda S, Kouzuma Y, Yonekura M.

Proteomes. 2015 Aug 14;3(3):184-235. doi: 10.3390/proteomes3030184.


Correction: Long-Term Mild, rather than Intense, Exercise Enhances Adult Hippocampal Neurogenesis and Greatly Changes the Transcriptomic Profile of the Hippocampus.

Inoue K, Okamoto M, Shibato J, Lee MC, Matsui T, Rakwal R, Soya H.

PLoS One. 2015 Jul 13;10(7):e0133089. doi: 10.1371/journal.pone.0133089. eCollection 2015.


Unraveling the Rat Intestine, Spleen and Liver Genome-Wide Transcriptome after the Oral Administration of Lavender Oil by a Two-Color Dye-Swap DNA Microarray Approach.

Kubo H, Shibato J, Saito T, Ogawa T, Rakwal R, Shioda S.

PLoS One. 2015 Jul 10;10(7):e0129951. doi: 10.1371/journal.pone.0129951. eCollection 2015.


Long-Term Mild, rather than Intense, Exercise Enhances Adult Hippocampal Neurogenesis and Greatly Changes the Transcriptomic Profile of the Hippocampus.

Inoue K, Okamoto M, Shibato J, Lee MC, Matsui T, Rakwal R, Soya H.

PLoS One. 2015 Jun 10;10(6):e0128720. doi: 10.1371/journal.pone.0128720. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0133089.


Unraveling the Specific Ischemic Core and Penumbra Transcriptome in the Permanent Middle Cerebral Artery Occlusion Mouse Model Brain Treated with the Neuropeptide PACAP38.

Hori M, Nakamachi T, Shibato J, Rakwal R, Shioda S, Numazawa S.

Microarrays (Basel). 2015 Jan 21;4(1):2-24. doi: 10.3390/microarrays4010002.


Unraveling the seed endosperm proteome of the lotus (Nelumbo nucifera Gaertn.) utilizing 1DE and 2DE separation in conjunction with tandem mass spectrometry.

Moro CF, Fukao Y, Shibato J, Rakwal R, Timperio AM, Zolla L, Agrawal GK, Shioda S, Kouzuma Y, Yonekura M.

Proteomics. 2015 May;15(10):1717-35. doi: 10.1002/pmic.201400406. Epub 2015 Feb 12.


Comprehensive analysis of neonatal versus adult unilateral decortication in a mouse model using behavioral, neuroanatomical, and DNA microarray approaches.

Yoshikawa A, Nakamachi T, Shibato J, Rakwal R, Shioda S.

Int J Mol Sci. 2014 Dec 5;15(12):22492-517. doi: 10.3390/ijms151222492.


DNA microarray-based analysis of voluntary resistance wheel running reveals novel transcriptome leading robust hippocampal plasticity.

Lee MC, Rakwal R, Shibato J, Inoue K, Chang H, Soya H.

Physiol Rep. 2014 Nov 20;2(11). pii: e12206. doi: 10.14814/phy2.12206. Print 2014 Nov 1.


PACAP38 differentially effects genes and CRMP2 protein expression in ischemic core and penumbra regions of permanent middle cerebral artery occlusion model mice brain.

Hori M, Nakamachi T, Shibato J, Rakwal R, Tsuchida M, Shioda S, Numazawa S.

Int J Mol Sci. 2014 Sep 23;15(9):17014-34. doi: 10.3390/ijms150917014.


Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at Iitate Village, Fukushima.

Hayashi G, Shibato J, Imanaka T, Cho K, Kubo A, Kikuchi S, Satoh K, Kimura S, Ozawa S, Fukutani S, Endo S, Ichikawa K, Agrawal GK, Shioda S, Fukumoto M, Rakwal R.

J Hered. 2014 Sep-Oct;105(5):723-38. doi: 10.1093/jhered/esu025.


Seeking genes responsible for developmental origins of health and disease from the fetal mouse liver following maternal food restriction.

Ogawa T, Shibato J, Rakwal R, Saito T, Tamura G, Kuwagata M, Shioda S.

Congenit Anom (Kyoto). 2014 Nov;54(4):195-219. doi: 10.1111/cga.12062.


Comparative analysis of seed transcriptomes of ambient ozone-fumigated 2 different rice cultivars.

Cho K, Shibato J, Kubo A, Kohno Y, Satoh K, Kikuchi S, Sarkar A, Agrawal GK, Rakwal R.

Plant Signal Behav. 2013 Nov;8(11):e26300. doi: 10.4161/psb.26300. Epub 2013 Sep 11.


The anti-inflammatory property of human bone marrow-derived mesenchymal stem/stromal cells is preserved in late-passage cultures.

Song D, Ohtaki H, Tsumuraya T, Miyamoto K, Shibato J, Rakwal R, Xu Z, Hiraizumi Y, Inoue T, Shioda S.

J Neuroimmunol. 2013 Oct 15;263(1-2):55-63. doi: 10.1016/j.jneuroim.2013.07.018. Epub 2013 Aug 6.


Genome-wide mapping of the ozone-responsive transcriptomes in rice panicle and seed tissues reveals novel insight into their regulatory events.

Cho K, Shibato J, Kubo A, Kohno Y, Satoh K, Kikuchi S, Agrawal GK, Sarkar A, Rakwal R.

Biotechnol Lett. 2013 Apr;35(4):647-56. doi: 10.1007/s10529-012-1118-x. Epub 2012 Dec 22.


Transcriptomics and proteomics analyses of the PACAP38 influenced ischemic brain in permanent middle cerebral artery occlusion model mice.

Hori M, Nakamachi T, Rakwal R, Shibato J, Ogawa T, Aiuchi T, Tsuruyama T, Tamaki K, Shioda S.

J Neuroinflammation. 2012 Nov 23;9:256. doi: 10.1186/1742-2094-9-256. Erratum in: J Neuroinflammation. 2013;10:18.


Quantification of jasmonic and salicylic acids in rice seedling leaves.

Cho K, Han O, Tamogami S, Shibato J, Kubo A, Agrawal GK, Rakwal R.

Methods Mol Biol. 2013;956:185-200. doi: 10.1007/978-1-62703-194-3_13.


Rice proteomic analysis: sample preparation for protein identification.

Agrawal GK, Jwa NS, Jung YH, Kim ST, Kim DW, Cho K, Shibato J, Rakwal R.

Methods Mol Biol. 2013;956:151-84. doi: 10.1007/978-1-62703-194-3_12.


Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles.

Miyagawa R, Tano K, Mizuno R, Nakamura Y, Ijiri K, Rakwal R, Shibato J, Masuo Y, Mayeda A, Hirose T, Akimitsu N.

RNA. 2012 Apr;18(4):738-51. doi: 10.1261/rna.028639.111. Epub 2012 Feb 21.


ADHD animal model characterization: transcriptomics and proteomics analyses.

Masuo Y, Shibato J, Rakwal R.

Methods Mol Biol. 2012;829:505-30. doi: 10.1007/978-1-61779-458-2_32.


Unraveling the ischemic brain transcriptome in a permanent middle cerebral artery occlusion mouse model by DNA microarray analysis.

Hori M, Nakamachi T, Rakwal R, Shibato J, Nakamura K, Wada Y, Tsuchikawa D, Yoshikawa A, Tamaki K, Shioda S.

Dis Model Mech. 2012 Mar;5(2):270-83. doi: 10.1242/dmm.008276. Epub 2011 Oct 20.


Role of the Arabidopsis leucine aminopeptidase 2.

Waditee-Sirisattha R, Hattori A, Shibato J, Rakwal R, Sirisattha S, Takabe T, Tsujimoto M.

Plant Signal Behav. 2011 Oct;6(10):1581-3. doi: 10.4161/psb.6.10.17105. Epub 2011 Oct 1.


Seeking gene candidates responsible for developmental origins of health and disease.

Ogawa T, Rakwal R, Shibato J, Sawa C, Saito T, Murayama A, Kuwagata M, Kageyama H, Yagi M, Satoh K, Shioda S.

Congenit Anom (Kyoto). 2011 Sep;51(3):110-25. doi: 10.1111/j.1741-4520.2011.00315.x.


The Arabidopsis aminopeptidase LAP2 regulates plant growth, leaf longevity and stress response.

Waditee-Sirisattha R, Shibato J, Rakwal R, Sirisattha S, Hattori A, Nakano T, Takabe T, Tsujimoto M.

New Phytol. 2011 Sep;191(4):958-69. doi: 10.1111/j.1469-8137.2011.03758.x. Epub 2011 May 13.


Tropospheric ozone and plants: absorption, responses, and consequences.

Cho K, Tiwari S, Agrawal SB, Torres NL, Agrawal M, Sarkar A, Shibato J, Agrawal GK, Kubo A, Rakwal R.

Rev Environ Contam Toxicol. 2011;212:61-111. doi: 10.1007/978-1-4419-8453-1_3.


MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes.

Tano K, Mizuno R, Okada T, Rakwal R, Shibato J, Masuo Y, Ijiri K, Akimitsu N.

FEBS Lett. 2010 Nov 19;584(22):4575-80. doi: 10.1016/j.febslet.2010.10.008. Epub 2010 Oct 13.


Reduced expression of Sytl 1 and Ccdc21 and impaired induction of Mt I by oxidative stress in SII-K1 knockout mice.

Tano K, Hamamoto H, Ito T, Sumiya E, Rakwal R, Shibato J, Masuo Y, Ijiri K, Sekimizu K, Akimitsu N.

Drug Discov Ther. 2010 Oct;4(5):368-72.


Investigating the impact of elevated levels of ozone on tropical wheat using integrated phenotypical, physiological, biochemical, and proteomics approaches.

Sarkar A, Rakwal R, Bhushan Agrawal S, Shibato J, Ogawa Y, Yoshida Y, Kumar Agrawal G, Agrawal M.

J Proteome Res. 2010 Sep 3;9(9):4565-84. doi: 10.1021/pr1002824.


Rice OsSIPK: a central component of ozone-triggered physiological responses.

Cho K, Agrawal GK, Jwa NS, Shibato J, Torres NL, Kubo A, Rakwal R.

Plant Signal Behav. 2009 May;4(5):448-50. Epub 2009 May 12.


Ultra low-dose radiation: stress responses and impacts using rice as a grass model.

Rakwal R, Agrawal GK, Shibato J, Imanaka T, Fukutani S, Tamogami S, Endo S, Sahoo SK, Masuo Y, Kimura S.

Int J Mol Sci. 2009 Mar;10(3):1215-25. doi: 10.3390/ijms10031215. Epub 2009 Mar 16.


Omic analyses unravels global molecular changes in the brain and liver of a rat model for chronic Sake (Japanese alcoholic beverage) intake.

Masuo Y, Imai T, Shibato J, Hirano M, Jones OA, Maguire ML, Satoh K, Kikuchi S, Rakwal R.

Electrophoresis. 2009 Apr;30(8):1259-75. doi: 10.1002/elps.200900045.


Transcriptomic analysis of rat brain tissue following gamma knife surgery: early and distinct bilateral effects in the un-irradiated striatum.

Hirano M, Shibato J, Rakwal R, Kouyama N, Katayama Y, Hayashi M, Masuo Y.

Mol Cells. 2009 Feb 28;27(2):263-8. doi: 10.1007/s10059-009-0032-0. Epub 2009 Feb 20.


Physiology and proteomics of the water-deficit stress response in three contrasting peanut genotypes.

Kottapalli KR, Rakwal R, Shibato J, Burow G, Tissue D, Burke J, Puppala N, Burow M, Payton P.

Plant Cell Environ. 2009 Apr;32(4):380-407. doi: 10.1111/j.1365-3040.2009.01933.x.


Gel-based proteomics approach for detecting low nitrogen-responsive proteins in cultivated rice species.

Kim du H, Shibato J, Kim DW, Oh MK, Kim MK, Shim IeS, Iwahashi H, Masuo Y, Rakwal R.

Physiol Mol Biol Plants. 2009 Jan;15(1):31-41. doi: 10.1007/s12298-009-0003-0. Epub 2009 May 14.


Comprehensive royal jelly (RJ) proteomics using one- and two-dimensional proteomics platforms reveals novel RJ proteins and potential phospho/glycoproteins.

Furusawa T, Rakwal R, Nam HW, Shibato J, Agrawal GK, Kim YS, Ogawa Y, Yoshida Y, Kouzuma Y, Masuo Y, Yonekura M.

J Proteome Res. 2008 Aug;7(8):3194-229. doi: 10.1021/pr800061j. Epub 2008 Jun 26.


Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling.

Cho K, Shibato J, Agrawal GK, Jung YH, Kubo A, Jwa NS, Tamogami S, Satoh K, Kikuchi S, Higashi T, Kimura S, Saji H, Tanaka Y, Iwahashi H, Masuo Y, Rakwal R.

J Proteome Res. 2008 Jul;7(7):2980-98. doi: 10.1021/pr800128q. Epub 2008 Jun 3.


Effects of coffee bean aroma on the rat brain stressed by sleep deprivation: a selected transcript- and 2D gel-based proteome analysis.

Seo HS, Hirano M, Shibato J, Rakwal R, Hwang IK, Masuo Y.

J Agric Food Chem. 2008 Jun 25;56(12):4665-73. doi: 10.1021/jf8001137. Epub 2008 Jun 3.


Proteomics- and transcriptomics-based screening of differentially expressed proteins and genes in brain of Wig rat: a model for attention deficit hyperactivity disorder (ADHD) research.

Hirano M, Rakwal R, Shibato J, Sawa H, Nagashima K, Ogawa Y, Yoshida Y, Iwahashi H, Niki E, Masuo Y.

J Proteome Res. 2008 Jun;7(6):2471-89. doi: 10.1021/pr800025t. Epub 2008 May 6.


Growth retardation and death of rice plants irradiated with carbon ion beams is preceded by very early dose- and time-dependent gene expression changes.

Rakwal R, Kimura S, Shibato J, Nojima K, Kim YK, Nahm BH, Jwa NS, Endo S, Tanaka K, Iwahashi H.

Mol Cells. 2008 Apr 30;25(2):272-8. Epub 2008 Mar 31.


Proteomics of two cultivated mushrooms Sparassis crispa and Hericium erinaceum provides insight into their numerous functional protein components and diversity.

Horie K, Rakwal R, Hirano M, Shibato J, Nam HW, Kim YS, Kouzuma Y, Agrawal GK, Masuo Y, Yonekura M.

J Proteome Res. 2008 May;7(5):1819-35. doi: 10.1021/pr070369o. Epub 2008 Apr 2.


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