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Transcriptome-wide association study reveals candidate causal genes for lung cancer.

Bossé Y, Li Z, Xia J, Manem V, Carreras-Torres R, Gabriel A, Gaudreault N, Albanes D, Aldrich MC, Andrew A, Arnold S, Bickeböller H, Bojesen SE, Brennan P, Brunnstrom H, Caporaso N, Chen C, Christiani DC, Field JK, Goodman G, Grankvist K, Houlston R, Johansson M, Johansson M, Kiemeney LA, Lam S, Landi MT, Lazarus P, Le Marchand L, Liu G, Melander O, Rennert G, Risch A, Rosenberg SM, Schabath MB, Shete S, Song Z, Stevens VL, Tardon A, Wichmann HE, Woll P, Zienolddiny S, Obeidat M, Timens W, Hung RJ, Joubert P, Amos CI, McKay JD.

Int J Cancer. 2019 Nov 6. doi: 10.1002/ijc.32771. [Epub ahead of print]


Physician-office vs home uptake of colorectal cancer screening using FOBT/FIT among screening-eligible US adults.

Chido-Amajuoyi OG, Sharma A, Talluri R, Tami-Maury I, Shete S.

Cancer Med. 2019 Dec;8(17):7408-7418. doi: 10.1002/cam4.2604. Epub 2019 Oct 21.


Characteristics of us adults attempting tobacco use cessation using e-cigarettes.

Chido-Amajuoyi OG, Mantey D, Cunningham S, Yu R, Kelder S, Hawk E, Cinciripini P, Shete S.

Addict Behav. 2020 Jan;100:106123. doi: 10.1016/j.addbeh.2019.106123. Epub 2019 Sep 9.


Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.

Dai J, Huang M, Amos CI, Hung RJ, Tardon A, Andrew A, Chen C, Christiani DC, Albanes D, Rennert G, Fan J, Goodman G, Liu G, Field JK, Grankvist K, Kiemeney LA, Le Marchand L, Schabath MB, Johansson M, Aldrich MC, Johansson M, Caporaso N, Lazarus P, Lam S, Bojesen SE, Arnold S, Landi MT, Risch A, Wichmann HE, Bickeboller H, Brennan P, Shete S, Melander O, Brunnstrom H, Zienolddiny S, Woll P, Stevens V, Hu Z, Shen H.

Int J Cancer. 2019 Oct 2. doi: 10.1002/ijc.32698. [Epub ahead of print]


Prevalence and determinants of cervical cancer screening with a combination of cytology and human papillomavirus testing.

Fokom Domgue J, Cunningham SA, Yu RK, Shete S.

Ann Epidemiol. 2019 Aug;36:40-47. doi: 10.1016/j.annepidem.2019.06.002. Epub 2019 Jun 21.


Exposure to Court-Ordered Tobacco Industry Antismoking Advertisements Among US Adults.

Chido-Amajuoyi OG, Yu RK, Agaku I, Shete S.

JAMA Netw Open. 2019 Jul 3;2(7):e196935. doi: 10.1001/jamanetworkopen.2019.6935.


An integrated therapy approach for the management of obesity-associated disorders: A case report.

Verma A, Shete SU, Doddoli G.

J Family Med Prim Care. 2019 Apr;8(4):1491-1494. doi: 10.4103/jfmpc.jfmpc_200_19.


Prevalence of abnormal cervical cancer screening outcomes among screening-compliant women in the United States.

Chido-Amajuoyi OG, Shete S.

Am J Obstet Gynecol. 2019 Jul;221(1):75-77. doi: 10.1016/j.ajog.2019.04.014. Epub 2019 May 9. No abstract available.


Gender-neutral HPV vaccination in Africa - Authors' reply.

Chido-Amajuoyi OG, Domgue JF, Obi-Jeff C, Schmeler K, Shete S.

Lancet Glob Health. 2019 May;7(5):e564. doi: 10.1016/S2214-109X(19)30065-8. No abstract available.


Glioma risk associated with extent of estimated European genetic ancestry in African Americans and Hispanics.

Ostrom QT, Egan KM, Nabors LB, Gerke T, Thompson RC, Olson JJ, LaRocca R, Chowdhary S, Eckel-Passow JE, Armstrong G, Wiencke JK, Bernstein JL, Claus EB, Il'yasova D, Johansen C, Lachance DH, Lai RK, Merrell RT, Olson SH, Sadetzki S, Schildkraut JM, Shete S, Houlston RS, Jenkins RB, Wrensch MR, Melin B, Amos CI, Huse JT, Barnholtz-Sloan JS, Bondy ML.

Int J Cancer. 2020 Feb 1;146(3):739-748. doi: 10.1002/ijc.32318. Epub 2019 Apr 22.


Differences in Sun Protection Behaviors Between Rural and Urban Communities in Texas.

Cunningham SA, Yu R, Shete S.

J Rural Health. 2019 Mar;35(2):155-166. doi: 10.1111/jrh.12350. Epub 2019 Mar 4.


Cancer-Related Risk Perceptions and Beliefs in Texas: Findings from a 2018 Population-Level Survey.

Cunningham SA, Yu R, Shih T, Giordano S, McNeill LH, Rechis R, Peterson SK, Cinciripini P, Foxhall L, Hawk E, Shete S.

Cancer Epidemiol Biomarkers Prev. 2019 Mar;28(3):486-494. doi: 10.1158/1055-9965.EPI-18-0846. Epub 2019 Jan 30.


A call for the introduction of gender-neutral HPV vaccination to national immunisation programmes in Africa.

Chido-Amajuoyi OG, Domgue JF, Obi-Jeff C, Schmeler K, Shete S.

Lancet Glob Health. 2019 Jan;7(1):e20-e21. doi: 10.1016/S2214-109X(18)30405-4. Epub 2018 Dec 1. No abstract available.


Aspirin, NSAIDs, and Glioma Risk: Original Data from the Glioma International Case-Control Study and a Meta-analysis.

Amirian ES, Ostrom QT, Armstrong GN, Lai RK, Gu X, Jacobs DI, Jalali A, Claus EB, Barnholtz-Sloan JS, Il'yasova D, Schildkraut JM, Ali-Osman F, Sadetzki S, Jenkins RB, Lachance DH, Olson SH, Bernstein JL, Merrell RT, Wrensch MR, Johansen C, Houlston RS, Scheurer ME, Shete S, Amos CI, Melin B, Bondy ML.

Cancer Epidemiol Biomarkers Prev. 2019 Mar;28(3):555-562. doi: 10.1158/1055-9965.EPI-18-0702. Epub 2018 Nov 27.


Mediation analysis in a case-control study when the mediator is a censored variable.

Wang J, Ning J, Shete S.

Stat Med. 2019 Mar 30;38(7):1213-1229. doi: 10.1002/sim.8028. Epub 2018 Nov 12.


Distinct epidemiological profiles associated with inflammatory breast cancer (IBC): A comprehensive analysis of the IBC registry at The University of Texas MD Anderson Cancer Center.

Fouad TM, Ueno NT, Yu RK, Ensor JE, Alvarez RH, Krishnamurthy S, Lucci A, Reuben JM, Yang W, Willey JS, Valero V, Bondy ML, Cristofinalli M, Shete S, Woodward WA, El-Zein R.

PLoS One. 2018 Sep 24;13(9):e0204372. doi: 10.1371/journal.pone.0204372. eCollection 2018.


Epidemiology of Childhood Onset Essential Hypertension.

Gupta-Malhotra M, Shete S, Barratt MS, Milewicz D, Hashmi SS.

J Hum Hypertens. 2018 Dec;32(12):808-813. doi: 10.1038/s41371-018-0110-x. Epub 2018 Sep 17.


Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.

Ostrom QT, Kinnersley B, Armstrong G, Rice T, Chen Y, Wiencke JK, McCoy LS, Hansen HM, Amos CI, Bernstein JL, Claus EB, Eckel-Passow JE, Il'yasova D, Johansen C, Lachance DH, Lai RK, Merrell RT, Olson SH, Sadetzki S, Schildkraut JM, Shete S, Rubin JB, Andersson U, Rajaraman P, Chanock SJ, Linet MS, Wang Z, Yeager M; GliomaScan consortium, Houlston RS, Jenkins RB, Wrensch MR, Melin B, Bondy ML, Barnholtz-Sloan JS.

Int J Cancer. 2018 Nov 15;143(10):2359-2366. doi: 10.1002/ijc.31759. Epub 2018 Sep 19.


Sex-specific gene and pathway modeling of inherited glioma risk.

Ostrom QT, Coleman W, Huang W, Rubin JB, Lathia JD, Berens ME, Speyer G, Liao P, Wrensch MR, Eckel-Passow JE, Armstrong G, Rice T, Wiencke JK, McCoy LS, Hansen HM, Amos CI, Bernstein JL, Claus EB, Houlston RS, Il'yasova D, Jenkins RB, Johansen C, Lachance DH, Lai RK, Merrell RT, Olson SH, Sadetzki S, Schildkraut JM, Shete S, Andersson U, Rajaraman P, Chanock SJ, Linet MS, Wang Z, Yeager M; GliomaScan consortium, Melin B, Bondy ML, Barnholtz-Sloan JS.

Neuro Oncol. 2019 Jan 1;21(1):71-82. doi: 10.1093/neuonc/noy135.


An approach to estimate bidirectional mediation effects with application to body mass index and fasting glucose.

Talluri R, Shete S.

Ann Hum Genet. 2018 Nov;82(6):396-406. doi: 10.1111/ahg.12261. Epub 2018 Jul 11.


Genome-wide association study identifies genes associated with neuropathy in patients with head and neck cancer.

Reyes-Gibby CC, Wang J, Yeung SJ, Chaftari P, Yu RK, Hanna EY, Shete S.

Sci Rep. 2018 Jun 8;8(1):8789. doi: 10.1038/s41598-018-27070-4.


Recognizing spatial and temporal clustering patterns of dengue outbreaks in Taiwan.

Lai WT, Chen CH, Hung H, Chen RB, Shete S, Wu CC.

BMC Infect Dis. 2018 Jun 4;18(1):256. doi: 10.1186/s12879-018-3159-9.


Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.

Ostrom QT, Kinnersley B, Wrensch MR, Eckel-Passow JE, Armstrong G, Rice T, Chen Y, Wiencke JK, McCoy LS, Hansen HM, Amos CI, Bernstein JL, Claus EB, Il'yasova D, Johansen C, Lachance DH, Lai RK, Merrell RT, Olson SH, Sadetzki S, Schildkraut JM, Shete S, Rubin JB, Lathia JD, Berens ME, Andersson U, Rajaraman P, Chanock SJ, Linet MS, Wang Z, Yeager M; GliomaScan consortium, Houlston RS, Jenkins RB, Melin B, Bondy ML, Barnholtz-Sloan JS.

Sci Rep. 2018 May 9;8(1):7352. doi: 10.1038/s41598-018-24580-z.


Familial aggregation of first degree relatives of children with essential hypertension.

Gupta-Malhotra M, Hashmi SS, Barratt MS, Milewicz DM, Shete S.

Blood Press. 2018 Oct;27(5):289-296. doi: 10.1080/08037051.2018.1463818. Epub 2018 Apr 26.


Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.

Pande M, Joon A, Brewster AM, Chen WV, Hopper JL, Eng C, Shete S, Casey G, Schumacher F, Lin Y, Harrison TA, White E, Ahsan H, Andrulis IL, Whittemore AS, John EM, Ko Win A, Makalic E, Schmidt DF, Kapuscinski MK, Ochs-Balcom HM, Gallinger S, Jenkins MA, Newcomb PA, Lindor NM, Peters U, Amos CI, Lynch PM.

PLoS One. 2018 Apr 26;13(4):e0196245. doi: 10.1371/journal.pone.0196245. eCollection 2018.


Genetic, Psychological, and Personal Network Factors Associated With Changes in Binge Drinking Over 2 Years Among Mexican Heritage Adolescents in the USA.

Song S, Marcum CS, Wilkinson AV, Shete S, Koehly LM.

Ann Behav Med. 2019 Feb 1;53(2):126-137. doi: 10.1093/abm/kay019.


Glioma-related seizures in relation to histopathological subtypes: a report from the glioma international case-control study.

Berntsson SG, Merrell RT, Amirian ES, Armstrong GN, Lachance D, Smits A, Zhou R, Jacobs DI, Wrensch MR, Olson SH, Il'yasova D, Claus EB, Barnholtz-Sloan JS, Schildkraut J, Sadetzki S, Johansen C, Houlston RS, Jenkins RB, Bernstein JL, Lai R, Shete S, Amos CI, Bondy ML, Melin BS.

J Neurol. 2018 Jun;265(6):1432-1442. doi: 10.1007/s00415-018-8857-0. Epub 2018 Apr 23.


An RCT with the combination of varenicline and bupropion for smoking cessation: clinical implications for front line use.

Cinciripini PM, Minnix JA, Green CE, Robinson JD, Engelmann JM, Versace F, Wetter DW, Shete S, Karam-Hage M.

Addiction. 2018 Apr 21. doi: 10.1111/add.14250. [Epub ahead of print]


Chronic obstructive pulmonary disease among lung cancer-free smokers: The importance of healthy controls.

Karpman MD, Eldridge R, Follis JL, Etzel CJ, Shete S, El-Zein RA.

Respir Investig. 2018 Jan;56(1):28-33. doi: 10.1016/j.resinv.2017.11.002. Epub 2017 Dec 6.


Selection of X-chromosome Inactivation Model.

Wang J, Talluri R, Shete S.

Cancer Inform. 2017 Dec 17;16:1176935117747272. doi: 10.1177/1176935117747272. eCollection 2017.


Assessing current temporal and space-time anomalies of disease incidence.

Wu CC, Chen CH, Shete S.

PLoS One. 2017 Nov 13;12(11):e0188065. doi: 10.1371/journal.pone.0188065. eCollection 2017.


Processing and Analyzing Human Microbiome Data.

Zhu X, Wang J, Reyes-Gibby C, Shete S.

Methods Mol Biol. 2017;1666:649-677. doi: 10.1007/978-1-4939-7274-6_31.


Testing Departure from Hardy-Weinberg Proportions.

Wang J, Shete S.

Methods Mol Biol. 2017;1666:83-115. doi: 10.1007/978-1-4939-7274-6_6.


Identification of Small and Non-Small Cell Lung Cancer Markers in Peripheral Blood Using Cytokinesis-Blocked Micronucleus and Spectral Karyotyping Assays.

El-Zein RA, Abdel-Rahman S, Santee KJ, Yu R, Shete S.

Cytogenet Genome Res. 2017;152(3):122-131. doi: 10.1159/000479809. Epub 2017 Sep 13.


Effect of yoga training on inflammatory cytokines and C-reactive protein in employees of small-scale industries.

Shete SU, Verma A, Kulkarni DD, Bhogal RS.

J Educ Health Promot. 2017 Aug 9;6:76. doi: 10.4103/jehp.jehp_65_17. eCollection 2017.


Effect of yoga practices on micronutrient absorption in urban residential school children.

Verma A, Shete S, Kulkarni D, Bhogal RS.

J Phys Ther Sci. 2017 Jul;29(7):1254-1258. doi: 10.1589/jpts.29.1254. Epub 2017 Jul 15.


Effect of yoga training on lipid metabolism in industrial workers with reference to body constitution (Prakriti).

Doddoli S, Shete S, Kulkarni D, Bhogal R.

J Tradit Complement Med. 2016 Nov 28;7(3):322-326. doi: 10.1016/j.jtcme.2016.08.001. eCollection 2017 Jul.


Identifying novel genes and biological processes relevant to the development of cancer therapy-induced mucositis: An informative gene network analysis.

Reyes-Gibby CC, Melkonian SC, Wang J, Yu RK, Shelburne SA, Lu C, Gunn GB, Chambers MS, Hanna EY, Yeung SJ, Shete S.

PLoS One. 2017 Jul 5;12(7):e0180396. doi: 10.1371/journal.pone.0180396. eCollection 2017. Review.


Cohort study of oncologic emergencies in patients with head and neck cancer.

Reyes-Gibby CC, Melkonian SC, Hanna EY, Yeung SJ, Lu C, Chambers MS, Banala SR, Gunn GB, Shete SS.

Head Neck. 2017 Jun;39(6):1195-1204. doi: 10.1002/hed.24748. Epub 2017 Mar 27.


Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.

Melin BS, Barnholtz-Sloan JS, Wrensch MR, Johansen C, Il'yasova D, Kinnersley B, Ostrom QT, Labreche K, Chen Y, Armstrong G, Liu Y, Eckel-Passow JE, Decker PA, Labussière M, Idbaih A, Hoang-Xuan K, Di Stefano AL, Mokhtari K, Delattre JY, Broderick P, Galan P, Gousias K, Schramm J, Schoemaker MJ, Fleming SJ, Herms S, Heilmann S, Nöthen MM, Wichmann HE, Schreiber S, Swerdlow A, Lathrop M, Simon M, Sanson M, Andersson U, Rajaraman P, Chanock S, Linet M, Wang Z, Yeager M; GliomaScan Consortium, Wiencke JK, Hansen H, McCoy L, Rice T, Kosel ML, Sicotte H, Amos CI, Bernstein JL, Davis F, Lachance D, Lau C, Merrell RT, Shildkraut J, Ali-Osman F, Sadetzki S, Scheurer M, Shete S, Lai RK, Claus EB, Olson SH, Jenkins RB, Houlston RS, Bondy ML.

Nat Genet. 2017 May;49(5):789-794. doi: 10.1038/ng.3823. Epub 2017 Mar 27.


Identifying demographic and psychosocial factors related to the escalation of smoking behavior among Mexican American adolescents.

Shete SS, Wilkinson AV.

Prev Med. 2017 Jun;99:146-151. doi: 10.1016/j.ypmed.2017.02.018. Epub 2017 Feb 21.


Prevalence of and Risk Factors for Oral Human Papillomavirus Infection With Multiple Genotypes in the United States.

Bui TC, Tran LT, Thai TN, Shete SS, Vidrine DJ, Sturgis EM.

Sex Transm Dis. 2017 Mar;44(3):166-172. doi: 10.1097/OLQ.0000000000000563.


Estimation of indirect effect when the mediator is a censored variable.

Wang J, Shete S.

Stat Methods Med Res. 2018 Oct;27(10):3010-3025. doi: 10.1177/0962280217690414. Epub 2017 Jan 30.


A Robust and Powerful Set-Valued Approach to Rare Variant Association Analyses of Secondary Traits in Case-Control Sequencing Studies.

Kang G, Bi W, Zhang H, Pounds S, Cheng C, Shete S, Zou F, Zhao Y, Zhang JF, Yue W.

Genetics. 2017 Mar;205(3):1049-1062. doi: 10.1534/genetics.116.192377. Epub 2016 Dec 30.


Correction to: Processing and Analyzing Human Microbiome Data.

Zhu X, Wang J, Reyes-Gibby C, Shete S.

Methods Mol Biol. 2017;1666:E1. doi: 10.1007/978-1-4939-7274-6_32.


Whole-exome sequencing reveals an inherited R566X mutation of the epithelial sodium channel β-subunit in a case of early-onset phenotype of Liddle syndrome.

Polfus LM, Boerwinkle E, Gibbs RA, Metcalf G, Muzny D, Veeraraghavan N, Grove M, Shete S, Wallace S, Milewicz D, Hanchard N, Lupski JR, Hashmi SS, Gupta-Malhotra M.

Cold Spring Harb Mol Case Stud. 2016 Nov;2(6):a001255.


Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.

Reyes-Gibby CC, Wang J, Silvas MR, Yu RK, Hanna EY, Shete S.

Sci Rep. 2016 Sep 27;6:34206. doi: 10.1038/srep34206.


Time-varying SMART design and data analysis methods for evaluating adaptive intervention effects.

Dai T, Shete S.

BMC Med Res Methodol. 2016 Aug 30;16(1):112. doi: 10.1186/s12874-016-0202-7.


Association Between Vaginal Douching and Genital Human Papillomavirus Infection Among Women in the United States.

Bui TC, Thai TN, Tran LT, Shete SS, Ramondetta LM, Basen-Engquist KM.

J Infect Dis. 2016 Nov 1;214(9):1370-1375. Epub 2016 Aug 23.


Using the weighted area under the net benefit curve for decision curve analysis.

Talluri R, Shete S.

BMC Med Inform Decis Mak. 2016 Jul 18;16:94. doi: 10.1186/s12911-016-0336-x.

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