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Items: 1 to 50 of 164

1.

MukB ATPases are regulated independently by the N- and C-terminal domains of MukF kleisin.

Zawadzka K, Zawadzki P, Baker R, Rajasekar KV, Wagner F, Sherratt DJ, Arciszewska LK.

Elife. 2018 Jan 11;7. pii: e31522. doi: 10.7554/eLife.31522.

2.

Direct observation of end resection by RecBCD during double-stranded DNA break repair in vivo.

Wiktor J, van der Does M, Büller L, Sherratt DJ, Dekker C.

Nucleic Acids Res. 2018 Feb 28;46(4):1821-1833. doi: 10.1093/nar/gkx1290.

3.

Pathways of DNA unlinking: A story of stepwise simplification.

Stolz R, Yoshida M, Brasher R, Flanner M, Ishihara K, Sherratt DJ, Shimokawa K, Vazquez M.

Sci Rep. 2017 Sep 29;7(1):12420. doi: 10.1038/s41598-017-12172-2.

4.

Single-Molecule Analysis of Bacterial DNA Repair and Mutagenesis.

Uphoff S, Sherratt DJ.

Annu Rev Biophys. 2017 May 22;46:411-432. doi: 10.1146/annurev-biophys-070816-034106. Epub 2017 Mar 24. Review.

PMID:
28375733
5.

Chromosome stitch-up?

Sherratt DJ.

Science. 2017 Feb 3;355(6324):460-461. doi: 10.1126/science.aam7183. No abstract available.

PMID:
28154037
6.

Activation of Xer-recombination at dif: structural basis of the FtsKγ-XerD interaction.

Keller AN, Xin Y, Boer S, Reinhardt J, Baker R, Arciszewska LK, Lewis PJ, Sherratt DJ, Löwe J, Grainge I.

Sci Rep. 2016 Oct 6;6:33357. doi: 10.1038/srep33357.

7.

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli.

Stracy M, Jaciuk M, Uphoff S, Kapanidis AN, Nowotny M, Sherratt DJ, Zawadzki P.

Nat Commun. 2016 Aug 26;7:12568. doi: 10.1038/ncomms12568.

8.

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones.

Ramirez MS, Xie G, Traglia GM, Johnson SL, Davenport KW, van Duin D, Ramazani A, Perez F, Jacobs MR, Sherratt DJ, Bonomo RA, Chain PS, Tolmasky ME.

Genome Biol Evol. 2016 Jul 3;8(6):2036-43. doi: 10.1093/gbe/evw135.

9.

The progression of replication forks at natural replication barriers in live bacteria.

Moolman MC, Tiruvadi Krishnan S, Kerssemakers JW, de Leeuw R, Lorent V, Sherratt DJ, Dekker NH.

Nucleic Acids Res. 2016 Jul 27;44(13):6262-73. doi: 10.1093/nar/gkw397. Epub 2016 May 10.

10.

CRISPR-mediated control of the bacterial initiation of replication.

Wiktor J, Lesterlin C, Sherratt DJ, Dekker C.

Nucleic Acids Res. 2016 May 5;44(8):3801-10. doi: 10.1093/nar/gkw214. Epub 2016 Apr 1.

11.

Oscillation helps to get division right.

Sherratt DJ.

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):2803-5. doi: 10.1073/pnas.1601792113. Epub 2016 Mar 4. No abstract available.

12.

Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation.

Uphoff S, Lord ND, Okumus B, Potvin-Trottier L, Sherratt DJ, Paulsson J.

Science. 2016 Mar 4;351(6277):1094-7. doi: 10.1126/science.aac9786.

13.

The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF.

Zawadzki P, Stracy M, Ginda K, Zawadzka K, Lesterlin C, Kapanidis AN, Sherratt DJ.

Cell Rep. 2015 Dec 22;13(11):2587-2596. doi: 10.1016/j.celrep.2015.11.034. Epub 2015 Dec 10.

14.

Assembly, translocation, and activation of XerCD-dif recombination by FtsK translocase analyzed in real-time by FRET and two-color tethered fluorophore motion.

May PF, Zawadzki P, Sherratt DJ, Kapanidis AN, Arciszewska LK.

Proc Natl Acad Sci U S A. 2015 Sep 15;112(37):E5133-41. doi: 10.1073/pnas.1510814112. Epub 2015 Aug 31.

15.

Shaping the landscape of the Escherichia coli chromosome: replication-transcription encounters in cells with an ectopic replication origin.

Ivanova D, Taylor T, Smith SL, Dimude JU, Upton AL, Mehrjouy MM, Skovgaard O, Sherratt DJ, Retkute R, Rudolph CJ.

Nucleic Acids Res. 2015 Sep 18;43(16):7865-77. doi: 10.1093/nar/gkv704. Epub 2015 Jul 8.

16.

Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells.

Moolman MC, Krishnan ST, Kerssemakers JW, van den Berg A, Tulinski P, Depken M, Reyes-Lamothe R, Sherratt DJ, Dekker NH.

Nat Commun. 2014 Dec 18;5:5820. doi: 10.1038/ncomms6820.

17.

Tethered fluorophore motion: studying large DNA conformational changes by single-fluorophore imaging.

May PFJ, Pinkney JNM, Zawadzki P, Evans GW, Sherratt DJ, Kapanidis AN.

Biophys J. 2014 Sep 2;107(5):1205-1216. doi: 10.1016/j.bpj.2014.07.024. Erratum in: Biophys J. 2015 Jul 21;109(2):457.

18.

Evidence for divisome localization mechanisms independent of the Min system and SlmA in Escherichia coli.

Bailey MW, Bisicchia P, Warren BT, Sherratt DJ, Männik J.

PLoS Genet. 2014 Aug 7;10(8):e1004504. doi: 10.1371/journal.pgen.1004504. eCollection 2014 Aug.

19.

Single-molecule imaging of FtsK translocation reveals mechanistic features of protein-protein collisions on DNA.

Lee JY, Finkelstein IJ, Arciszewska LK, Sherratt DJ, Greene EC.

Mol Cell. 2014 Jun 5;54(5):832-43. doi: 10.1016/j.molcel.2014.03.033. Epub 2014 Apr 24.

20.

Visualizing protein-DNA interactions in live bacterial cells using photoactivated single-molecule tracking.

Uphoff S, Sherratt DJ, Kapanidis AN.

J Vis Exp. 2014 Mar 10;(85). doi: 10.3791/51177.

21.

Toxin Kid uncouples DNA replication and cell division to enforce retention of plasmid R1 in Escherichia coli cells.

Pimentel B, Nair R, Bermejo-Rodríguez C, Preston MA, Agu CA, Wang X, Bernal JA, Sherratt DJ, de la Cueva-Méndez G.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2734-9. doi: 10.1073/pnas.1308241111. Epub 2014 Jan 21.

22.

RecA bundles mediate homology pairing between distant sisters during DNA break repair.

Lesterlin C, Ball G, Schermelleh L, Sherratt DJ.

Nature. 2014 Feb 13;506(7487):249-53. doi: 10.1038/nature12868. Epub 2013 Dec 22.

23.

FtsK-dependent XerCD-dif recombination unlinks replication catenanes in a stepwise manner.

Shimokawa K, Ishihara K, Grainge I, Sherratt DJ, Vazquez M.

Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):20906-11. doi: 10.1073/pnas.1308450110. Epub 2013 Nov 11.

24.

High-copy bacterial plasmids diffuse in the nucleoid-free space, replicate stochastically and are randomly partitioned at cell division.

Reyes-Lamothe R, Tran T, Meas D, Lee L, Li AM, Sherratt DJ, Tolmasky ME.

Nucleic Acids Res. 2014 Jan;42(2):1042-51. doi: 10.1093/nar/gkt918. Epub 2013 Oct 16.

25.

Conformational transitions during FtsK translocase activation of individual XerCD-dif recombination complexes.

Zawadzki P, May PF, Baker RA, Pinkney JN, Kapanidis AN, Sherratt DJ, Arciszewska LK.

Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17302-7. doi: 10.1073/pnas.1311065110. Epub 2013 Oct 7.

26.

Replication-fork dynamics.

Duderstadt KE, Reyes-Lamothe R, van Oijen AM, Sherratt DJ.

Cold Spring Harb Perspect Biol. 2014 Jan 1;6(1). pii: a010157. doi: 10.1101/cshperspect.a010157. Review.

27.

Single-molecule DNA repair in live bacteria.

Uphoff S, Reyes-Lamothe R, Garza de Leon F, Sherratt DJ, Kapanidis AN.

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8063-8. doi: 10.1073/pnas.1301804110. Epub 2013 Apr 29.

28.

Breaking symmetry in SMCs.

Upton AL, Sherratt DJ.

Nat Struct Mol Biol. 2013 Mar;20(3):246-9. doi: 10.1038/nsmb.2525. No abstract available.

PMID:
23463306
29.

Hydroxy-terminated conjugated polymer nanoparticles have near-unity bright fraction and reveal cholesterol-dependence of IGF1R nanodomains.

Koner AL, Krndija D, Hou Q, Sherratt DJ, Howarth M.

ACS Nano. 2013 Feb 26;7(2):1137-44. doi: 10.1021/nn3042122. Epub 2013 Jan 30.

30.

Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence.

Pinkney JN, Zawadzki P, Mazuryk J, Arciszewska LK, Sherratt DJ, Kapanidis AN.

Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20871-6. doi: 10.1073/pnas.1211922109. Epub 2012 Nov 26.

31.

In vivo architecture and action of bacterial structural maintenance of chromosome proteins.

Badrinarayanan A, Reyes-Lamothe R, Uphoff S, Leake MC, Sherratt DJ.

Science. 2012 Oct 26;338(6106):528-31. doi: 10.1126/science.1227126.

32.

Chromosome replication and segregation in bacteria.

Reyes-Lamothe R, Nicolas E, Sherratt DJ.

Annu Rev Genet. 2012;46:121-43. doi: 10.1146/annurev-genet-110711-155421. Epub 2012 Aug 28. Review.

PMID:
22934648
33.

Robustness and accuracy of cell division in Escherichia coli in diverse cell shapes.

Männik J, Wu F, Hol FJ, Bisicchia P, Sherratt DJ, Keymer JE, Dekker C.

Proc Natl Acad Sci U S A. 2012 May 1;109(18):6957-62. doi: 10.1073/pnas.1120854109. Epub 2012 Apr 16.

34.

Single-molecule imaging of DNA curtains reveals mechanisms of KOPS sequence targeting by the DNA translocase FtsK.

Lee JY, Finkelstein IJ, Crozat E, Sherratt DJ, Greene EC.

Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6531-6. doi: 10.1073/pnas.1201613109. Epub 2012 Apr 9.

35.

Small plasmids harboring qnrB19: a model for plasmid evolution mediated by site-specific recombination at oriT and Xer sites.

Tran T, Andres P, Petroni A, Soler-Bistué A, Albornoz E, Zorreguieta A, Reyes-Lamothe R, Sherratt DJ, Corso A, Tolmasky ME.

Antimicrob Agents Chemother. 2012 Apr;56(4):1821-7. doi: 10.1128/AAC.06036-11. Epub 2012 Jan 30.

36.

Replication and segregation of an Escherichia coli chromosome with two replication origins.

Wang X, Lesterlin C, Reyes-Lamothe R, Ball G, Sherratt DJ.

Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):E243-50. doi: 10.1073/pnas.1100874108. Epub 2011 Jun 13.

37.

Activation of XerCD-dif recombination by the FtsK DNA translocase.

Grainge I, Lesterlin C, Sherratt DJ.

Nucleic Acids Res. 2011 Jul;39(12):5140-8. doi: 10.1093/nar/gkr078. Epub 2011 Mar 2.

38.

Sequence-specific assembly of FtsK hexamers establishes directional translocation on DNA.

Graham JE, Sherratt DJ, Szczelkun MD.

Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20263-8. doi: 10.1073/pnas.1007518107. Epub 2010 Nov 3.

39.

Independent segregation of the two arms of the Escherichia coli ori region requires neither RNA synthesis nor MreB dynamics.

Wang X, Sherratt DJ.

J Bacteriol. 2010 Dec;192(23):6143-53. doi: 10.1128/JB.00861-10. Epub 2010 Oct 1.

40.

Stoichiometry and architecture of active DNA replication machinery in Escherichia coli.

Reyes-Lamothe R, Sherratt DJ, Leake MC.

Science. 2010 Apr 23;328(5977):498-501. doi: 10.1126/science.1185757.

41.

A streptavidin variant with slower biotin dissociation and increased mechanostability.

Chivers CE, Crozat E, Chu C, Moy VT, Sherratt DJ, Howarth M.

Nat Methods. 2010 May;7(5):391-3. doi: 10.1038/nmeth.1450. Epub 2010 Apr 11.

42.

Separating speed and ability to displace roadblocks during DNA translocation by FtsK.

Crozat E, Meglio A, Allemand JF, Chivers CE, Howarth M, Vénien-Bryan C, Grainge I, Sherratt DJ.

EMBO J. 2010 Apr 21;29(8):1423-33. doi: 10.1038/emboj.2010.29. Epub 2010 Apr 8.

43.

The Escherichia coli DNA translocase FtsK.

Sherratt DJ, Arciszewska LK, Crozat E, Graham JE, Grainge I.

Biochem Soc Trans. 2010 Apr;38(2):395-8. doi: 10.1042/BST0380395. Review.

PMID:
20298190
44.
45.

FtsK translocation on DNA stops at XerCD-dif.

Graham JE, Sivanathan V, Sherratt DJ, Arciszewska LK.

Nucleic Acids Res. 2010 Jan;38(1):72-81. doi: 10.1093/nar/gkp843. Epub 2009 Oct 23.

46.

mwr Xer site-specific recombination is hypersensitive to DNA supercoiling.

Trigueros S, Tran T, Sorto N, Newmark J, Colloms SD, Sherratt DJ, Tolmasky ME.

Nucleic Acids Res. 2009 Jun;37(11):3580-7. doi: 10.1093/nar/gkp208. Epub 2009 Apr 9.

47.

KOPS-guided DNA translocation by FtsK safeguards Escherichia coli chromosome segregation.

Sivanathan V, Emerson JE, Pages C, Cornet F, Sherratt DJ, Arciszewska LK.

Mol Microbiol. 2009 Feb;71(4):1031-42. doi: 10.1111/j.1365-2958.2008.06586.x. Epub 2009 Jan 1.

48.

Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV.

Wang X, Reyes-Lamothe R, Sherratt DJ.

Genes Dev. 2008 Sep 1;22(17):2426-33. doi: 10.1101/gad.487508.

49.

Molecular mechanism of sequence-directed DNA loading and translocation by FtsK.

Löwe J, Ellonen A, Allen MD, Atkinson C, Sherratt DJ, Grainge I.

Mol Cell. 2008 Aug 22;31(4):498-509. doi: 10.1016/j.molcel.2008.05.027.

50.

Visualizing genetic loci and molecular machines in living bacteria.

Wang X, Reyes-Lamothe R, Sherratt DJ.

Biochem Soc Trans. 2008 Aug;36(Pt 4):749-53. doi: 10.1042/BST0360749. Review.

PMID:
18631152

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